Wall clock time and date at job start Tue Mar 31 2020 23:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46984 * 2 1 4 4 H 1.08995 * 109.46814 * 52.51512 * 3 2 1 5 5 C 1.53003 * 109.47146 * 292.51186 * 3 2 1 6 6 C 1.50708 * 109.46550 * 78.89889 * 5 3 2 7 7 O 1.21275 * 120.00553 * 9.19663 * 6 5 3 8 8 N 1.34782 * 119.99420 * 189.47344 * 6 5 3 9 9 C 1.46501 * 119.99757 * 179.72439 * 8 6 5 10 10 H 1.08996 * 110.45425 * 32.39856 * 9 8 6 11 11 C 1.54548 * 110.50638 * 269.65270 * 9 8 6 12 12 O 1.44637 * 105.03173 * 217.71711 * 11 9 8 13 13 C 1.43249 * 105.22290 * 39.03263 * 12 11 9 14 14 C 1.52879 * 115.84620 * 90.92342 * 13 12 11 15 15 N 1.47782 * 85.78480 * 94.51196 * 14 13 12 16 16 C 1.36936 * 134.40654 * 203.87604 * 15 14 13 17 17 H 1.08000 * 119.99973 * 180.02562 * 16 15 14 18 18 C 1.38814 * 119.99955 * 359.97438 * 16 15 14 19 19 N 1.31619 * 119.99920 * 359.97438 * 18 16 15 20 20 Si 1.86796 * 120.00042 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46992 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47234 * 119.99817 * 20 18 16 23 23 H 1.48505 * 109.47016 * 239.99671 * 20 18 16 24 24 C 1.47783 * 91.19334 * 23.87427 * 15 14 13 25 25 C 1.53472 * 106.25572 * 321.06230 * 13 12 11 26 26 C 1.53001 * 109.46752 * 172.51489 * 3 2 1 27 27 C 1.53005 * 109.46928 * 185.67717 * 26 3 2 28 28 C 1.52995 * 109.47522 * 305.67662 * 26 3 2 29 29 C 1.52999 * 109.46987 * 65.68146 * 26 3 2 30 30 H 1.08994 * 109.46920 * 187.36116 * 1 2 3 31 31 H 1.08999 * 109.47355 * 307.36935 * 1 2 3 32 32 H 1.09004 * 109.47112 * 67.36971 * 1 2 3 33 33 H 1.09005 * 109.46932 * 240.00457 * 2 1 3 34 34 H 1.08996 * 109.47050 * 120.00303 * 2 1 3 35 35 H 1.08991 * 109.47477 * 318.90196 * 5 3 2 36 36 H 1.08998 * 109.46970 * 198.89019 * 5 3 2 37 37 H 0.97002 * 120.00055 * 359.72613 * 8 6 5 38 38 H 1.08999 * 110.33388 * 336.60945 * 11 9 8 39 39 H 1.09004 * 110.32958 * 98.83393 * 11 9 8 40 40 H 1.08997 * 113.82408 * 208.73169 * 14 13 12 41 41 H 1.09007 * 113.82277 * 340.30077 * 14 13 12 42 42 H 0.96996 * 120.00213 * 180.02562 * 19 18 16 43 43 H 1.08997 * 113.82748 * 221.91267 * 24 15 14 44 44 H 1.08997 * 113.93989 * 90.35168 * 24 15 14 45 45 H 1.09000 * 110.57169 * 264.15464 * 25 13 12 46 46 H 1.08996 * 110.57110 * 141.27430 * 25 13 12 47 47 H 1.09010 * 109.46753 * 60.00167 * 27 26 3 48 48 H 1.08992 * 109.47447 * 179.97438 * 27 26 3 49 49 H 1.09001 * 109.47041 * 300.00711 * 27 26 3 50 50 H 1.09003 * 109.46752 * 66.47229 * 28 26 3 51 51 H 1.08997 * 109.47561 * 186.47812 * 28 26 3 52 52 H 1.09003 * 109.47112 * 306.47980 * 28 26 3 53 53 H 1.09000 * 109.47058 * 60.00239 * 29 26 3 54 54 H 1.09005 * 109.46672 * 179.97438 * 29 26 3 55 55 H 1.08992 * 109.46925 * 299.99627 * 29 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5714 1.9935 0.8154 5 6 1.6893 2.1075 -1.3326 6 6 0.2408 2.5235 -1.3204 7 8 -0.3988 2.4636 -0.2918 8 7 -0.3453 2.9570 -2.4541 9 6 -1.7550 3.3557 -2.4436 10 1 -2.0214 3.7880 -1.4792 11 6 -2.6619 2.1470 -2.7677 12 8 -3.7277 2.6858 -3.5836 13 6 -3.0969 3.6437 -4.4418 14 6 -2.6034 3.1104 -5.7869 15 7 -3.9016 3.5708 -6.3223 16 6 -4.6707 3.2237 -7.4008 17 1 -5.6093 3.7272 -7.5792 18 6 -4.2433 2.2253 -8.2654 19 7 -3.0987 1.6127 -8.0489 20 14 -5.2921 1.7522 -9.7370 21 1 -6.5218 2.5845 -9.7564 22 1 -4.5219 1.9770 -10.9866 23 1 -5.6667 0.3186 -9.6375 24 6 -4.0383 4.5556 -5.2289 25 6 -2.0430 4.3591 -3.5857 26 6 3.5584 1.4466 0.1879 27 6 4.0509 2.8882 0.3297 28 6 3.9184 0.6584 1.4488 29 6 4.2243 0.7974 -1.0270 30 1 -0.3633 -1.0192 0.1317 31 1 -0.3634 0.6237 0.8167 32 1 -0.3633 0.3954 -0.9486 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 1.8578 1.4020 -2.1462 36 1 2.3183 2.9858 -1.4770 37 1 0.1662 3.0049 -3.2769 38 1 -2.1041 1.3930 -3.3230 39 1 -3.0665 1.7202 -1.8499 40 1 -1.7455 3.6508 -6.1868 41 1 -2.4760 2.0280 -5.8114 42 1 -2.7999 0.9153 -8.6532 43 1 -5.0440 4.6146 -4.8127 44 1 -3.6144 5.5331 -5.4585 45 1 -2.4429 5.2907 -3.1853 46 1 -1.1405 4.5470 -4.1672 47 1 3.5764 3.3508 1.1953 48 1 5.1325 2.8912 0.4640 49 1 3.7943 3.4498 -0.5686 50 1 3.6716 -0.3933 1.3027 51 1 4.9857 0.7570 1.6467 52 1 3.3542 1.0497 2.2954 53 1 3.9679 1.3590 -1.9252 54 1 5.3061 0.8007 -0.8932 55 1 3.8735 -0.2296 -1.1280 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717233661.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:22 Heat of formation + Delta-G solvation = -61.387578 kcal Electronic energy + Delta-G solvation = -31165.626920 eV Core-core repulsion = 27203.147270 eV Total energy + Delta-G solvation = -3962.479651 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.73824 -40.92845 -39.08929 -37.68187 -35.57981 -34.14155 -33.96392 -32.11116 -30.71397 -29.57004 -28.09988 -27.98476 -27.53862 -26.67564 -25.90860 -23.95921 -22.70231 -22.07436 -21.36514 -20.62398 -19.10777 -18.75571 -18.12414 -17.47995 -17.07094 -16.86003 -16.64236 -16.42225 -15.84264 -15.65982 -15.50757 -14.94847 -14.89162 -14.72130 -14.63073 -14.34928 -14.13205 -13.80084 -13.63251 -13.50393 -13.20815 -13.15700 -13.02283 -12.95042 -12.77863 -12.74399 -12.64511 -12.51499 -12.49412 -12.36652 -12.21590 -11.93766 -11.77348 -11.65816 -11.58380 -11.31309 -11.20582 -11.13357 -10.97017 -10.93210 -10.58453 -10.53273 -9.98011 -8.92756 -7.91125 -5.23308 1.43590 1.45327 1.55229 1.74435 2.20095 2.46221 2.90986 3.27737 3.41268 3.54019 3.68996 3.73043 3.78713 3.84769 3.87921 4.10014 4.17027 4.22618 4.24881 4.38463 4.49539 4.55558 4.61628 4.66298 4.69479 4.72493 4.73263 4.80851 4.84638 4.86284 4.90109 4.91554 4.95547 4.98414 5.01285 5.07588 5.13749 5.15839 5.16964 5.20746 5.25346 5.28007 5.29727 5.39661 5.47713 5.49875 5.50176 5.61568 5.63344 5.70615 5.92306 6.12257 6.62618 6.91723 7.35416 7.59583 8.53898 9.25930 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018714 B = 0.002359 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.837071 B =11866.611718 C =12310.119784 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C -0.060 4.060 4 H 0.066 0.934 5 C -0.136 4.136 6 C 0.511 3.489 7 O -0.565 6.565 8 N -0.715 5.715 9 C 0.129 3.871 10 H 0.101 0.899 11 C 0.037 3.963 12 O -0.369 6.369 13 C 0.072 3.928 14 C 0.153 3.847 15 N -0.642 5.642 16 C -0.232 4.232 17 H 0.081 0.919 18 C -0.069 4.069 19 N -0.952 5.952 20 Si 0.978 3.022 21 H -0.266 1.266 22 H -0.288 1.288 23 H -0.294 1.294 24 C 0.126 3.874 25 C -0.131 4.131 26 C -0.061 4.061 27 C -0.144 4.144 28 C -0.142 4.142 29 C -0.146 4.146 30 H 0.039 0.961 31 H 0.051 0.949 32 H 0.035 0.965 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.117 0.883 37 H 0.413 0.587 38 H 0.050 0.950 39 H 0.092 0.908 40 H 0.040 0.960 41 H 0.036 0.964 42 H 0.248 0.752 43 H 0.050 0.950 44 H 0.080 0.920 45 H 0.108 0.892 46 H 0.104 0.896 47 H 0.048 0.952 48 H 0.061 0.939 49 H 0.061 0.939 50 H 0.059 0.941 51 H 0.060 0.940 52 H 0.048 0.952 53 H 0.063 0.937 54 H 0.058 0.942 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.022 2.339 18.020 25.593 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.078 4.078 4 H 0.084 0.916 5 C -0.176 4.176 6 C 0.300 3.700 7 O -0.444 6.444 8 N -0.369 5.369 9 C 0.023 3.977 10 H 0.119 0.881 11 C -0.041 4.041 12 O -0.287 6.287 13 C 0.031 3.969 14 C 0.028 3.972 15 N -0.369 5.369 16 C -0.361 4.361 17 H 0.099 0.901 18 C -0.262 4.262 19 N -0.601 5.601 20 Si 0.807 3.193 21 H -0.191 1.191 22 H -0.215 1.215 23 H -0.221 1.221 24 C 0.002 3.998 25 C -0.170 4.170 26 C -0.061 4.061 27 C -0.201 4.201 28 C -0.200 4.200 29 C -0.203 4.203 30 H 0.058 0.942 31 H 0.070 0.930 32 H 0.054 0.946 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.123 0.877 36 H 0.134 0.866 37 H 0.250 0.750 38 H 0.068 0.932 39 H 0.110 0.890 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.069 0.931 44 H 0.097 0.903 45 H 0.126 0.874 46 H 0.122 0.878 47 H 0.067 0.933 48 H 0.080 0.920 49 H 0.080 0.920 50 H 0.078 0.922 51 H 0.079 0.921 52 H 0.067 0.933 53 H 0.082 0.918 54 H 0.077 0.923 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 17.224 2.089 18.480 25.349 hybrid contribution -0.509 -0.589 -1.480 1.672 sum 16.715 1.500 17.000 23.888 Atomic orbital electron populations 1.21910 0.96956 0.99762 1.01300 1.21699 0.94684 0.96519 1.02490 1.21005 0.94955 0.95784 0.96103 0.91574 1.21956 0.91122 1.03604 1.00874 1.21206 0.90592 0.75575 0.82663 1.90692 1.66639 1.54229 1.32873 1.46086 1.10933 1.67063 1.12789 1.22102 0.81470 0.93749 1.00336 0.88092 1.23898 0.89157 0.96542 0.94534 1.88996 1.30919 1.57578 1.51214 1.23422 0.93543 0.89834 0.90118 1.22528 0.88127 0.98263 0.88287 1.46268 1.20895 1.41103 1.28594 1.19426 1.00688 1.15158 1.00802 0.90112 1.25609 0.98927 0.99384 1.02250 1.69996 1.22573 1.27966 1.39575 0.85011 0.78126 0.77372 0.78832 1.19081 1.21506 1.22142 1.22764 0.98123 0.93182 0.85733 1.22953 0.99677 0.98919 0.95466 1.20538 0.93299 0.96068 0.96210 1.21949 1.01213 0.95188 1.01792 1.21924 1.01363 1.00065 0.96611 1.21985 1.00426 1.00731 0.97195 0.94160 0.93032 0.94593 0.91464 0.91016 0.87673 0.86554 0.75024 0.93158 0.89000 0.94213 0.94552 0.94344 0.93128 0.90296 0.87401 0.87773 0.93304 0.91953 0.91969 0.92229 0.92099 0.93264 0.91847 0.92302 0.92533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.24 8.22 71.98 0.59 -2.65 16 2 C -0.12 -1.99 4.66 30.60 0.14 -1.85 16 3 C -0.06 -0.93 1.24 -10.79 -0.01 -0.95 16 4 H 0.07 1.35 7.21 -2.39 -0.02 1.33 16 5 C -0.14 -1.99 3.93 29.85 0.12 -1.87 16 6 C 0.51 10.88 5.94 87.66 0.52 11.40 16 7 O -0.57 -15.81 11.94 -3.02 -0.04 -15.84 16 8 N -0.72 -14.64 5.08 -437.24 -2.22 -16.87 16 9 C 0.13 3.27 3.49 46.11 0.16 3.43 16 10 H 0.10 2.62 7.55 -2.39 -0.02 2.60 16 11 C 0.04 1.19 7.37 72.51 0.53 1.72 16 12 O -0.37 -15.08 11.44 -148.98 -1.70 -16.78 16 13 C 0.07 2.67 1.28 -10.66 -0.01 2.66 16 14 C 0.15 7.19 6.99 86.09 0.60 7.80 16 15 N -0.64 -33.88 3.71 -741.11 -2.75 -36.62 16 16 C -0.23 -13.49 10.70 84.03 0.90 -12.59 16 17 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 18 C -0.07 -4.03 5.50 84.86 0.47 -3.56 16 19 N -0.95 -58.13 11.40 21.65 0.25 -57.89 16 20 Si 0.98 46.84 29.55 68.60 2.03 48.87 16 21 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 23 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 24 C 0.13 5.13 8.47 86.09 0.73 5.86 16 25 C -0.13 -3.32 6.25 31.34 0.20 -3.12 16 26 C -0.06 -0.73 0.58 -52.18 -0.03 -0.76 16 27 C -0.14 -1.59 8.28 71.98 0.60 -1.00 16 28 C -0.14 -1.67 7.75 71.98 0.56 -1.12 16 29 C -0.15 -1.52 7.81 71.98 0.56 -0.96 16 30 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 1.35 6.87 -2.39 -0.02 1.34 16 32 H 0.03 0.91 5.78 -2.38 -0.01 0.90 16 33 H 0.07 1.05 6.80 -2.38 -0.02 1.03 16 34 H 0.07 1.13 6.06 -2.39 -0.01 1.11 16 35 H 0.11 1.31 7.26 -2.39 -0.02 1.29 16 36 H 0.12 1.26 5.99 -2.39 -0.01 1.25 16 37 H 0.41 6.78 8.38 -92.71 -0.78 6.00 16 38 H 0.05 1.72 8.06 -2.39 -0.02 1.70 16 39 H 0.09 2.87 8.14 -2.38 -0.02 2.85 16 40 H 0.04 1.79 7.96 -2.39 -0.02 1.77 16 41 H 0.04 1.98 7.20 -2.38 -0.02 1.96 16 42 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 43 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 44 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 45 H 0.11 2.29 8.12 -2.39 -0.02 2.27 16 46 H 0.10 2.24 7.39 -2.39 -0.02 2.23 16 47 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 48 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 49 H 0.06 0.62 6.28 -2.39 -0.01 0.60 16 50 H 0.06 0.69 6.57 -2.39 -0.02 0.67 16 51 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 52 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 53 H 0.06 0.60 6.78 -2.39 -0.02 0.58 16 54 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 55 H 0.06 0.62 6.76 -2.39 -0.02 0.60 16 Total: -1.00 -73.63 409.34 2.28 -71.35 By element: Atomic # 1 Polarization: 21.25 SS G_CDS: 0.09 Total: 21.34 kcal Atomic # 6 Polarization: -4.17 SS G_CDS: 6.62 Total: 2.45 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -4.72 Total: -111.38 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -1.74 Total: -32.63 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 2.03 Total: 48.87 kcal Total: -73.63 2.28 -71.35 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717233661.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.961 kcal (2) G-P(sol) polarization free energy of solvation -73.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds