Wall clock time and date at job start Tue Mar 31 2020 23:38:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52999 * 109.46946 * 2 1 4 4 H 1.08995 * 109.47486 * 306.53079 * 3 2 1 5 5 C 1.53001 * 109.46928 * 66.53998 * 3 2 1 6 6 C 1.50705 * 109.46694 * 197.84717 * 5 3 2 7 7 O 1.21284 * 119.99992 * 9.58033 * 6 5 3 8 8 N 1.34780 * 120.00042 * 189.57567 * 6 5 3 9 9 C 1.46492 * 120.00198 * 180.02562 * 8 6 5 10 10 H 1.09003 * 110.97381 * 322.31221 * 9 8 6 11 11 C 1.55014 * 111.10867 * 86.45455 * 9 8 6 12 12 O 1.43913 * 105.17889 * 81.95541 * 11 9 8 13 13 C 1.42392 * 109.55773 * 24.29862 * 12 11 9 14 14 C 1.52693 * 116.14597 * 129.84342 * 13 12 11 15 15 N 1.47211 * 87.79438 * 90.70475 * 14 13 12 16 16 C 1.36939 * 135.97488 * 206.43516 * 15 14 13 17 17 H 1.08000 * 120.00050 * 0.02562 * 16 15 14 18 18 C 1.38814 * 120.00171 * 179.72112 * 16 15 14 19 19 N 1.31621 * 119.99644 * 0.28318 * 18 16 15 20 20 Si 1.86795 * 120.00050 * 180.27561 * 18 16 15 21 21 H 1.48500 * 109.47305 * 60.00404 * 20 18 16 22 22 H 1.48503 * 109.47128 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47378 * 299.99872 * 20 18 16 24 24 C 1.47209 * 88.05458 * 26.69149 * 15 14 13 25 25 C 1.53659 * 108.53289 * 358.08496 * 13 12 11 26 26 C 1.53002 * 109.46790 * 186.53596 * 3 2 1 27 27 C 1.53001 * 109.47367 * 293.82097 * 26 3 2 28 28 C 1.52995 * 109.47657 * 53.82526 * 26 3 2 29 29 C 1.53005 * 109.47022 * 173.82678 * 26 3 2 30 30 H 1.08999 * 109.47113 * 296.65696 * 1 2 3 31 31 H 1.09005 * 109.47188 * 56.65649 * 1 2 3 32 32 H 1.08997 * 109.47260 * 176.65568 * 1 2 3 33 33 H 1.09004 * 109.47073 * 240.00368 * 2 1 3 34 34 H 1.09002 * 109.47464 * 120.00187 * 2 1 3 35 35 H 1.08997 * 109.47281 * 77.84827 * 5 3 2 36 36 H 1.08994 * 109.47159 * 317.84157 * 5 3 2 37 37 H 0.96999 * 119.99667 * 0.02562 * 8 6 5 38 38 H 1.09004 * 110.30016 * 323.03795 * 11 9 8 39 39 H 1.08996 * 110.30683 * 200.88396 * 11 9 8 40 40 H 1.08999 * 113.49979 * 335.97734 * 14 13 12 41 41 H 1.09004 * 113.56129 * 205.44266 * 14 13 12 42 42 H 0.96999 * 119.99720 * 179.97438 * 19 18 16 43 43 H 1.09003 * 113.49480 * 88.04255 * 24 15 14 44 44 H 1.08997 * 113.49893 * 218.57846 * 24 15 14 45 45 H 1.09001 * 110.93623 * 97.29569 * 25 13 12 46 46 H 1.08995 * 110.93231 * 220.96237 * 25 13 12 47 47 H 1.09009 * 109.46874 * 60.00061 * 27 26 3 48 48 H 1.09001 * 109.47178 * 179.97438 * 27 26 3 49 49 H 1.08994 * 109.47331 * 300.00607 * 27 26 3 50 50 H 1.09003 * 109.46838 * 59.99220 * 28 26 3 51 51 H 1.08993 * 109.47900 * 180.02562 * 28 26 3 52 52 H 1.09010 * 109.47082 * 300.00348 * 28 26 3 53 53 H 1.09000 * 109.47063 * 66.11496 * 29 26 3 54 54 H 1.08997 * 109.47100 * 186.11948 * 29 26 3 55 55 H 1.09003 * 109.46852 * 306.11037 * 29 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5844 1.9890 -0.8257 5 6 1.6685 2.1147 1.3233 6 6 1.7641 3.6110 1.1708 7 8 1.9251 4.0995 0.0724 8 7 1.6707 4.4062 2.2549 9 6 1.7631 5.8607 2.1066 10 1 2.4983 6.1296 1.3481 11 6 0.3781 6.4782 1.7851 12 8 -0.2829 6.6039 3.0572 13 6 0.6897 6.6762 4.0947 14 6 0.5291 7.8240 5.0888 15 7 -0.2936 6.9216 5.9109 16 6 -1.2991 7.0683 6.8288 17 1 -1.6543 8.0548 7.0876 18 6 -1.8662 5.9487 7.4221 19 7 -1.4336 4.7464 7.1064 20 14 -3.2430 6.1486 8.6685 21 1 -4.3931 6.8372 8.0296 22 1 -3.6721 4.8112 9.1508 23 1 -2.7582 6.9561 9.8166 24 6 0.4425 5.7926 5.3188 25 6 2.0854 6.5437 3.4658 26 6 3.5611 1.4456 -0.1642 27 6 4.2087 0.8144 1.0700 28 6 3.9416 0.6400 -1.4080 29 6 4.0545 2.8857 -0.3186 30 1 -0.3633 0.4611 0.9184 31 1 -0.3634 0.5649 -0.8585 32 1 -0.3633 -1.0259 -0.0599 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 2.3541 1.7845 2.1036 36 1 0.6491 1.8418 1.5958 37 1 1.5422 4.0154 3.1334 38 1 -0.1876 5.8168 1.1288 39 1 0.4988 7.4580 1.3232 40 1 -0.0251 8.6724 4.6873 41 1 1.4625 8.1188 5.5684 42 1 -1.8296 3.9641 7.5212 43 1 1.3529 5.5356 5.8603 44 1 -0.1848 4.9257 5.1115 45 1 2.5377 7.5233 3.3117 46 1 2.7292 5.9108 4.0766 47 1 3.8572 -0.2116 1.1801 48 1 5.2924 0.8162 0.9528 49 1 3.9377 1.3883 1.9561 50 1 3.4802 1.0897 -2.2873 51 1 5.0252 0.6418 -1.5248 52 1 3.5901 -0.3860 -1.2980 53 1 3.8808 3.4307 0.6092 54 1 5.1210 2.8822 -0.5438 55 1 3.5132 3.3699 -1.1315 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717233662.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:26 Heat of formation + Delta-G solvation = -53.321162 kcal Electronic energy + Delta-G solvation = -31591.356599 eV Core-core repulsion = 27629.226735 eV Total energy + Delta-G solvation = -3962.129865 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.80602 -40.97821 -38.93851 -37.75230 -35.34729 -34.24444 -34.17140 -32.12935 -30.68723 -29.70734 -28.10975 -27.99402 -27.34772 -26.51946 -25.94284 -23.89170 -22.75910 -22.06078 -21.40800 -20.55288 -18.99833 -18.73159 -18.16226 -17.74629 -17.15280 -16.96817 -16.55078 -16.08210 -15.97916 -15.45480 -15.22694 -15.01610 -14.99340 -14.89185 -14.71103 -14.41209 -14.32861 -13.81881 -13.62100 -13.55862 -13.17163 -13.07781 -12.96769 -12.82258 -12.70656 -12.64450 -12.56917 -12.53798 -12.45833 -12.29865 -12.13909 -12.10566 -11.90503 -11.60067 -11.54591 -11.35220 -11.14133 -11.07700 -10.98811 -10.91776 -10.60600 -10.32204 -9.85255 -8.90813 -7.89761 -5.21393 1.44040 1.48037 1.53667 1.73154 2.25708 2.47270 2.82227 3.30598 3.37924 3.62119 3.66367 3.75088 3.78494 3.81738 3.87763 4.05483 4.11097 4.25380 4.38508 4.43049 4.47565 4.56003 4.59480 4.68126 4.69644 4.74263 4.75282 4.77199 4.82093 4.86252 4.90943 4.91860 4.92232 5.01178 5.04850 5.05699 5.14230 5.14899 5.16836 5.22003 5.23418 5.28848 5.33442 5.35150 5.48944 5.51229 5.53542 5.56245 5.65295 5.75658 5.94899 6.36258 6.59969 6.92422 7.32639 7.60693 8.61613 9.27651 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014842 B = 0.002803 C = 0.002542 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1886.037413 B = 9985.241993 C =11011.161750 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.119 4.119 3 C -0.059 4.059 4 H 0.062 0.938 5 C -0.148 4.148 6 C 0.515 3.485 7 O -0.562 6.562 8 N -0.718 5.718 9 C 0.122 3.878 10 H 0.117 0.883 11 C 0.036 3.964 12 O -0.373 6.373 13 C 0.076 3.924 14 C 0.107 3.893 15 N -0.640 5.640 16 C -0.231 4.231 17 H 0.080 0.920 18 C -0.066 4.066 19 N -0.949 5.949 20 Si 0.979 3.021 21 H -0.281 1.281 22 H -0.291 1.291 23 H -0.275 1.275 24 C 0.153 3.847 25 C -0.128 4.128 26 C -0.062 4.062 27 C -0.147 4.147 28 C -0.140 4.140 29 C -0.127 4.127 30 H 0.049 0.951 31 H 0.046 0.954 32 H 0.062 0.938 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.113 0.887 36 H 0.099 0.901 37 H 0.407 0.593 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.042 0.958 41 H 0.071 0.929 42 H 0.248 0.752 43 H 0.041 0.959 44 H 0.038 0.962 45 H 0.120 0.880 46 H 0.104 0.896 47 H 0.067 0.933 48 H 0.056 0.944 49 H 0.055 0.945 50 H 0.046 0.954 51 H 0.056 0.944 52 H 0.069 0.931 53 H 0.041 0.959 54 H 0.043 0.957 55 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.875 -8.440 -15.730 22.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.156 4.156 3 C -0.078 4.078 4 H 0.081 0.919 5 C -0.187 4.187 6 C 0.304 3.696 7 O -0.441 6.441 8 N -0.369 5.369 9 C 0.017 3.983 10 H 0.135 0.865 11 C -0.041 4.041 12 O -0.292 6.292 13 C 0.035 3.965 14 C -0.018 4.018 15 N -0.366 5.366 16 C -0.359 4.359 17 H 0.097 0.903 18 C -0.259 4.259 19 N -0.598 5.598 20 Si 0.807 3.193 21 H -0.207 1.207 22 H -0.217 1.217 23 H -0.201 1.201 24 C 0.027 3.973 25 C -0.167 4.167 26 C -0.062 4.062 27 C -0.203 4.203 28 C -0.197 4.197 29 C -0.184 4.184 30 H 0.069 0.931 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.131 0.869 36 H 0.117 0.883 37 H 0.242 0.758 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.060 0.940 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.056 0.944 45 H 0.138 0.862 46 H 0.122 0.878 47 H 0.086 0.914 48 H 0.075 0.925 49 H 0.074 0.926 50 H 0.065 0.935 51 H 0.075 0.925 52 H 0.088 0.912 53 H 0.060 0.940 54 H 0.062 0.938 55 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 13.510 -8.166 -16.241 22.649 hybrid contribution -1.072 0.103 1.303 1.691 sum 12.438 -8.063 -14.938 21.044 Atomic orbital electron populations 1.21871 0.96379 1.01862 1.01406 1.21694 0.95321 0.95388 1.03188 1.20986 0.95227 0.95941 0.95634 0.91910 1.22063 1.05072 0.90029 1.01537 1.20991 0.74586 0.90354 0.83669 1.90672 1.49829 1.77348 1.26262 1.46052 1.73834 1.06172 1.10851 1.22460 0.96764 0.80579 0.98506 0.86510 1.24010 0.93627 1.00762 0.85742 1.88417 1.31823 1.93835 1.15088 1.23091 0.87868 0.97559 0.87981 1.22944 0.94711 0.94268 0.89891 1.45775 1.37596 1.04842 1.48392 1.19236 1.08832 0.93192 1.14628 0.90266 1.25598 1.02625 0.94989 1.02736 1.69984 1.45487 0.97187 1.47098 0.85155 0.78956 0.76417 0.78814 1.20737 1.21701 1.20109 1.22417 0.93551 0.92714 0.88623 1.23183 0.95252 1.03643 0.94617 1.20527 0.94084 0.95235 0.96366 1.22027 1.00469 1.01077 0.96770 1.21915 1.01178 1.00139 0.96435 1.22007 0.99264 0.95792 1.01343 0.93148 0.93505 0.91898 0.90406 0.90784 0.86949 0.88315 0.75807 0.91094 0.89823 0.94003 0.91160 0.94296 0.94170 0.94402 0.86205 0.87780 0.91360 0.92520 0.92580 0.93461 0.92514 0.91197 0.94029 0.93828 0.93223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.66 71.98 0.70 -1.86 16 2 C -0.12 -1.74 4.69 30.59 0.14 -1.59 16 3 C -0.06 -1.07 1.24 -10.79 -0.01 -1.09 16 4 H 0.06 1.46 7.28 -2.39 -0.02 1.44 16 5 C -0.15 -2.86 4.99 29.85 0.15 -2.72 16 6 C 0.52 12.61 5.85 87.66 0.51 13.12 16 7 O -0.56 -16.31 11.97 -3.04 -0.04 -16.34 16 8 N -0.72 -17.49 5.24 -435.24 -2.28 -19.77 16 9 C 0.12 2.99 3.37 46.54 0.16 3.14 16 10 H 0.12 2.58 7.74 -2.39 -0.02 2.57 16 11 C 0.04 1.07 7.49 72.67 0.54 1.61 16 12 O -0.37 -14.90 11.18 -148.98 -1.67 -16.56 16 13 C 0.08 2.76 1.75 -10.68 -0.02 2.74 16 14 C 0.11 4.35 8.20 83.38 0.68 5.03 16 15 N -0.64 -33.83 3.78 -739.12 -2.80 -36.62 16 16 C -0.23 -13.44 10.74 84.03 0.90 -12.54 16 17 H 0.08 4.44 7.83 -2.91 -0.02 4.42 16 18 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 19 N -0.95 -57.62 11.51 21.65 0.25 -57.37 16 20 Si 0.98 46.72 29.55 68.60 2.03 48.74 16 21 H -0.28 -13.13 7.11 99.48 0.71 -12.43 16 22 H -0.29 -13.81 7.11 99.48 0.71 -13.11 16 23 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 24 C 0.15 7.06 6.89 83.47 0.58 7.63 16 25 C -0.13 -3.10 5.97 31.67 0.19 -2.91 16 26 C -0.06 -1.04 0.58 -52.18 -0.03 -1.07 16 27 C -0.15 -2.09 7.80 71.98 0.56 -1.52 16 28 C -0.14 -2.03 7.96 71.98 0.57 -1.46 16 29 C -0.13 -2.65 6.77 71.98 0.49 -2.16 16 30 H 0.05 0.88 6.46 -2.39 -0.02 0.86 16 31 H 0.05 0.82 8.14 -2.38 -0.02 0.80 16 32 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.08 1.01 5.95 -2.38 -0.01 1.00 16 34 H 0.07 0.96 6.92 -2.39 -0.02 0.94 16 35 H 0.11 1.82 5.44 -2.39 -0.01 1.81 16 36 H 0.10 1.93 6.11 -2.39 -0.01 1.92 16 37 H 0.41 9.87 8.62 -92.71 -0.80 9.07 16 38 H 0.07 2.25 8.14 -2.38 -0.02 2.23 16 39 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 41 H 0.07 2.48 8.13 -2.38 -0.02 2.46 16 42 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 43 H 0.04 1.78 7.95 -2.39 -0.02 1.76 16 44 H 0.04 2.02 7.13 -2.39 -0.02 2.01 16 45 H 0.12 2.26 8.13 -2.39 -0.02 2.24 16 46 H 0.10 2.26 7.81 -2.39 -0.02 2.24 16 47 H 0.07 0.82 6.75 -2.38 -0.02 0.81 16 48 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 49 H 0.06 0.82 5.97 -2.39 -0.01 0.81 16 50 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 51 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 52 H 0.07 0.85 6.19 -2.38 -0.01 0.83 16 53 H 0.04 0.94 5.62 -2.39 -0.01 0.93 16 54 H 0.04 0.82 8.14 -2.39 -0.02 0.81 16 55 H 0.05 1.24 6.86 -2.39 -0.02 1.23 16 Total: -1.00 -72.57 408.47 2.15 -70.42 By element: Atomic # 1 Polarization: 26.47 SS G_CDS: 0.08 Total: 26.54 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: 6.58 Total: 0.96 kcal Atomic # 7 Polarization: -108.94 SS G_CDS: -4.83 Total: -113.77 kcal Atomic # 8 Polarization: -31.21 SS G_CDS: -1.70 Total: -32.91 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Total: -72.57 2.15 -70.42 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717233662.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.103 kcal (2) G-P(sol) polarization free energy of solvation -72.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds