Wall clock time and date at job start Tue Mar 31 2020 22:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46854 * 2 1 4 4 H 1.09009 * 109.47080 * 184.47627 * 3 2 1 5 5 C 1.52999 * 109.47491 * 304.47246 * 3 2 1 6 6 C 1.53002 * 109.47403 * 293.68835 * 5 3 2 7 7 C 1.54263 * 110.03134 * 293.53762 * 6 5 3 8 8 C 1.54893 * 104.19529 * 217.10364 * 7 6 5 9 9 C 1.54889 * 102.74498 * 37.94130 * 8 7 6 10 10 C 1.53875 * 110.03298 * 176.36763 * 6 5 3 11 11 C 1.50693 * 109.47474 * 64.47697 * 3 2 1 12 12 O 1.21280 * 120.00423 * 240.00170 * 11 3 2 13 13 N 1.34780 * 120.00068 * 60.00100 * 11 3 2 14 14 C 1.46505 * 119.99936 * 184.31299 * 13 11 3 15 15 C 1.52996 * 113.28054 * 306.34824 * 14 13 11 16 16 C 1.52998 * 109.47467 * 288.96412 * 15 14 13 17 17 O 1.42898 * 109.47359 * 184.74285 * 16 15 14 18 18 C 1.53503 * 114.20389 * 173.28460 * 14 13 11 19 19 N 1.47065 * 87.98480 * 220.14348 * 18 14 13 20 20 C 1.36937 * 136.05781 * 207.08291 * 19 18 14 21 21 H 1.07998 * 120.00011 * 354.48444 * 20 19 18 22 22 C 1.38809 * 119.99880 * 174.47576 * 20 19 18 23 23 N 1.31617 * 119.99897 * 182.46263 * 22 20 19 24 24 Si 1.86802 * 120.00075 * 2.74064 * 22 20 19 25 25 H 1.48499 * 109.47122 * 176.02723 * 24 22 20 26 26 H 1.48497 * 109.47246 * 296.02548 * 24 22 20 27 27 H 1.48499 * 109.47485 * 56.02409 * 24 22 20 28 28 C 1.47068 * 87.88356 * 27.34524 * 19 18 14 29 29 H 1.09004 * 109.47031 * 305.56232 * 1 2 3 30 30 H 1.09001 * 109.46958 * 65.55774 * 1 2 3 31 31 H 1.08993 * 109.47010 * 185.55972 * 1 2 3 32 32 H 1.08997 * 109.47244 * 239.99894 * 2 1 3 33 33 H 1.08994 * 109.47091 * 119.99689 * 2 1 3 34 34 H 1.09012 * 109.46529 * 53.68368 * 5 3 2 35 35 H 1.08992 * 109.47329 * 173.68263 * 5 3 2 36 36 H 1.09008 * 110.01206 * 54.97718 * 6 5 3 37 37 H 1.09007 * 110.48676 * 335.78193 * 7 6 5 38 38 H 1.09000 * 110.48613 * 98.42619 * 7 6 5 39 39 H 1.09000 * 110.75426 * 279.62351 * 8 7 6 40 40 H 1.09002 * 110.91449 * 156.32706 * 8 7 6 41 41 H 1.09004 * 110.48286 * 203.38093 * 9 8 7 42 42 H 1.08995 * 110.48611 * 80.73825 * 9 8 7 43 43 H 1.08999 * 110.03066 * 238.56552 * 10 6 5 44 44 H 1.08995 * 110.03395 * 0.02562 * 10 6 5 45 45 H 0.96998 * 120.00069 * 4.30296 * 13 11 3 46 46 H 1.09002 * 109.46891 * 48.96019 * 15 14 13 47 47 H 1.08999 * 109.47134 * 168.96165 * 15 14 13 48 48 H 1.09003 * 109.47094 * 304.74227 * 16 15 14 49 49 H 1.08997 * 109.46994 * 64.73638 * 16 15 14 50 50 H 0.96701 * 114.00101 * 179.97438 * 17 16 15 51 51 H 1.09002 * 113.46043 * 105.36318 * 18 14 13 52 52 H 1.08997 * 113.52032 * 334.93562 * 18 14 13 53 53 H 0.97002 * 120.00101 * 5.29259 * 23 22 20 54 54 H 1.08997 * 113.47087 * 87.43641 * 28 19 18 55 55 H 1.09006 * 113.46485 * 217.87663 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1271 1.4436 -0.0802 5 6 1.4402 2.1956 -1.1892 6 6 1.9818 1.6050 -2.4926 7 6 3.4956 1.8782 -2.6076 8 6 3.7178 2.1567 -4.1150 9 6 2.4518 2.9595 -4.5045 10 6 1.3180 2.2924 -3.6986 11 6 1.6303 2.1202 1.2821 12 8 0.9276 3.1082 1.2482 13 7 2.0447 1.6285 2.4666 14 6 1.5703 2.2296 3.7156 15 6 1.8010 3.7404 3.7853 16 6 3.2961 4.0211 3.9494 17 8 3.5008 5.4244 4.1252 18 6 1.9932 1.4692 4.9803 19 7 0.6511 1.7293 5.5226 20 6 0.0996 1.8591 6.7692 21 1 0.7009 1.6762 7.6474 22 6 -1.2324 2.2259 6.9040 23 7 -1.7496 2.3979 8.1020 24 14 -2.2929 2.4680 5.3854 25 1 -3.6891 2.7603 5.7981 26 1 -1.7642 3.6039 4.5884 27 1 -2.2684 1.2322 4.5623 28 6 0.1610 1.7821 4.1370 29 1 -0.3633 0.5977 0.8360 30 1 -0.3633 0.4252 -0.9356 31 1 -0.3633 -1.0228 0.0996 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.3545 2.0991 -1.1701 35 1 1.7125 3.2491 -1.1269 36 1 1.7918 0.5320 -2.5232 37 1 3.7723 2.7495 -2.0139 38 1 4.0660 1.0043 -2.2930 39 1 3.7717 1.2239 -4.6763 40 1 4.6167 2.7529 -4.2722 41 1 2.2603 2.8746 -5.5742 42 1 2.5598 4.0053 -4.2171 43 1 0.8068 1.5530 -4.3151 44 1 0.6104 3.0471 -3.3554 45 1 2.6568 0.8765 2.4921 46 1 1.4427 4.2054 2.8669 47 1 1.2585 4.1519 4.6365 48 1 3.6725 3.4869 4.8218 49 1 3.8286 3.6848 3.0598 50 1 4.4280 5.6758 4.2360 51 1 2.7896 1.9627 5.5373 52 1 2.1935 0.4122 4.8057 53 1 -1.1827 2.3438 8.8873 54 1 -0.1221 0.8076 3.7392 55 1 -0.6036 2.5421 3.9757 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717508675.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:34:11 Heat of formation + Delta-G solvation = -78.717942 kcal Electronic energy + Delta-G solvation = -31734.748789 eV Core-core repulsion = 27771.517637 eV Total energy + Delta-G solvation = -3963.231152 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.89201 -40.33969 -39.00125 -37.77844 -36.15368 -35.41042 -34.09649 -32.07457 -31.42892 -29.59219 -29.30264 -28.37441 -27.34054 -25.34455 -24.69614 -23.64819 -22.86024 -21.54502 -20.84107 -20.45664 -19.77126 -19.54837 -18.53385 -18.04001 -17.44810 -17.01775 -16.92308 -16.58320 -15.98500 -15.90082 -15.73298 -15.44573 -15.20722 -15.10246 -14.89443 -14.36050 -14.15099 -13.99993 -13.76788 -13.63403 -13.47846 -13.43125 -13.17738 -12.84848 -12.78437 -12.60106 -12.40753 -12.33993 -12.01624 -11.91961 -11.91106 -11.86576 -11.72716 -11.45537 -11.41093 -11.39660 -11.25434 -11.23167 -11.08962 -11.05597 -10.90498 -10.33331 -10.03155 -9.27112 -8.67083 -5.52911 1.30492 1.37588 1.55650 1.72687 2.10154 2.41986 2.92290 3.03794 3.15124 3.47931 3.68211 3.69641 3.82538 3.92267 4.02509 4.05788 4.07495 4.15922 4.22407 4.33819 4.37732 4.45803 4.47682 4.51847 4.53992 4.59705 4.62898 4.66653 4.75549 4.76437 4.80855 4.88113 4.90951 4.93956 4.97222 5.00377 5.07172 5.12439 5.13593 5.14165 5.20961 5.24563 5.27146 5.31504 5.33791 5.49185 5.51049 5.54506 5.63247 5.69234 5.89864 6.64546 6.67439 6.89465 7.25878 7.38592 8.17923 8.86909 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014805 B = 0.003195 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.856517 B = 8762.050534 C = 9628.031591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.109 4.109 3 C -0.097 4.097 4 H 0.125 0.875 5 C -0.091 4.091 6 C -0.085 4.085 7 C -0.121 4.121 8 C -0.124 4.124 9 C -0.128 4.128 10 C -0.126 4.126 11 C 0.514 3.486 12 O -0.576 6.576 13 N -0.701 5.701 14 C 0.163 3.837 15 C -0.106 4.106 16 C 0.093 3.907 17 O -0.596 6.596 18 C 0.128 3.872 19 N -0.649 5.649 20 C -0.278 4.278 21 H 0.064 0.936 22 C -0.077 4.077 23 N -0.970 5.970 24 Si 1.104 2.896 25 H -0.301 1.301 26 H -0.289 1.289 27 H -0.270 1.270 28 C 0.083 3.917 29 H 0.022 0.978 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.102 0.898 33 H 0.079 0.921 34 H 0.055 0.945 35 H 0.048 0.952 36 H 0.088 0.912 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.073 0.927 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.055 0.945 43 H 0.069 0.931 44 H 0.050 0.950 45 H 0.419 0.581 46 H 0.078 0.922 47 H 0.042 0.958 48 H 0.055 0.945 49 H 0.064 0.936 50 H 0.397 0.603 51 H 0.065 0.935 52 H 0.077 0.923 53 H 0.251 0.749 54 H 0.056 0.944 55 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.357 -6.210 -27.138 32.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.146 4.146 3 C -0.118 4.118 4 H 0.142 0.858 5 C -0.128 4.128 6 C -0.104 4.104 7 C -0.158 4.158 8 C -0.161 4.161 9 C -0.165 4.165 10 C -0.163 4.163 11 C 0.303 3.697 12 O -0.455 6.455 13 N -0.355 5.355 14 C 0.075 3.925 15 C -0.144 4.144 16 C 0.016 3.984 17 O -0.404 6.404 18 C 0.003 3.997 19 N -0.378 5.378 20 C -0.406 4.406 21 H 0.082 0.918 22 C -0.270 4.270 23 N -0.615 5.615 24 Si 0.934 3.066 25 H -0.229 1.229 26 H -0.217 1.217 27 H -0.196 1.196 28 C -0.043 4.043 29 H 0.041 0.959 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.120 0.880 33 H 0.097 0.903 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.092 0.908 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.257 0.743 46 H 0.097 0.903 47 H 0.061 0.939 48 H 0.073 0.927 49 H 0.082 0.918 50 H 0.247 0.753 51 H 0.083 0.917 52 H 0.095 0.905 53 H 0.060 0.940 54 H 0.073 0.927 55 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 14.592 -5.190 -27.471 31.536 hybrid contribution 1.647 -0.291 1.553 2.282 sum 16.239 -5.481 -25.918 31.072 Atomic orbital electron populations 1.21889 0.97043 1.01669 1.01151 1.21559 0.95207 0.93263 1.04582 1.21456 1.03532 0.96562 0.90212 0.85773 1.21512 1.00079 0.98524 0.92732 1.21802 0.95312 1.00507 0.92734 1.22492 0.95087 1.01795 0.96471 1.22496 0.97343 1.00197 0.96082 1.22373 0.95278 0.99097 0.99769 1.22234 0.97946 0.99552 0.96585 1.21435 0.78760 0.83474 0.86065 1.90669 1.39233 1.27769 1.87796 1.45754 1.49655 1.36239 1.03811 1.21663 0.94128 0.92717 0.84029 1.21352 0.97175 0.93362 1.02537 1.21996 0.94676 0.81503 1.00215 1.86470 1.33407 1.24371 1.96167 1.22860 0.88369 0.98602 0.89908 1.45750 1.07068 1.84782 1.00162 1.19991 0.96491 1.41974 0.82141 0.91848 1.26600 0.96768 0.99278 1.04305 1.70992 1.37556 1.55185 0.97812 0.83252 0.74220 0.77250 0.71906 1.22861 1.21730 1.19600 1.23371 0.97191 0.98607 0.85134 0.95856 0.91982 0.91669 0.87969 0.90265 0.92665 0.93316 0.89387 0.92331 0.90049 0.90797 0.91485 0.91344 0.92636 0.91263 0.93121 0.74260 0.90336 0.93890 0.92670 0.91760 0.75294 0.91693 0.90532 0.94011 0.92667 0.94861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.00 9.15 71.98 0.66 -2.34 16 2 C -0.11 -1.40 5.34 30.60 0.16 -1.24 16 3 C -0.10 -1.56 2.42 -11.54 -0.03 -1.59 16 4 H 0.12 1.33 7.28 -2.38 -0.02 1.32 16 5 C -0.09 -1.67 2.89 30.59 0.09 -1.58 16 6 C -0.09 -1.08 2.81 -10.07 -0.03 -1.11 16 7 C -0.12 -1.29 5.37 31.67 0.17 -1.12 16 8 C -0.12 -1.27 6.91 31.89 0.22 -1.05 16 9 C -0.13 -1.59 6.83 31.67 0.22 -1.38 16 10 C -0.13 -1.74 6.46 31.32 0.20 -1.54 16 11 C 0.51 13.30 5.83 87.65 0.51 13.81 16 12 O -0.58 -20.92 13.60 -3.03 -0.04 -20.96 16 13 N -0.70 -16.76 5.12 -421.95 -2.16 -18.93 16 14 C 0.16 5.55 0.84 4.16 0.00 5.55 16 15 C -0.11 -4.01 4.97 30.59 0.15 -3.85 16 16 C 0.09 2.67 6.91 71.98 0.50 3.17 16 17 O -0.60 -17.67 13.66 -148.98 -2.03 -19.71 16 18 C 0.13 4.47 7.80 83.18 0.65 5.12 16 19 N -0.65 -31.58 3.48 -737.88 -2.57 -34.14 16 20 C -0.28 -16.37 11.09 84.03 0.93 -15.44 16 21 H 0.06 3.92 8.05 -2.91 -0.02 3.89 16 22 C -0.08 -4.76 5.50 84.86 0.47 -4.30 16 23 N -0.97 -64.31 13.70 21.65 0.30 -64.01 16 24 Si 1.10 59.13 25.09 68.60 1.72 60.85 16 25 H -0.30 -16.21 7.11 99.48 0.71 -15.50 16 26 H -0.29 -15.37 6.33 99.48 0.63 -14.74 16 27 H -0.27 -13.29 6.73 99.48 0.67 -12.62 16 28 C 0.08 3.64 5.34 83.26 0.44 4.08 16 29 H 0.02 0.59 7.19 -2.39 -0.02 0.58 16 30 H 0.06 1.12 6.55 -2.39 -0.02 1.10 16 31 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.10 0.81 6.72 -2.39 -0.02 0.80 16 33 H 0.08 0.86 7.54 -2.39 -0.02 0.85 16 34 H 0.05 1.23 6.12 -2.38 -0.01 1.21 16 35 H 0.05 1.12 7.80 -2.39 -0.02 1.10 16 36 H 0.09 0.90 6.53 -2.38 -0.02 0.88 16 37 H 0.06 0.75 7.78 -2.38 -0.02 0.73 16 38 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 43 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 44 H 0.05 0.85 7.67 -2.39 -0.02 0.84 16 45 H 0.42 6.45 8.19 -92.71 -0.76 5.69 16 46 H 0.08 3.27 5.69 -2.39 -0.01 3.25 16 47 H 0.04 2.01 7.93 -2.39 -0.02 1.99 16 48 H 0.06 1.47 6.44 -2.39 -0.02 1.45 16 49 H 0.06 1.48 8.14 -2.39 -0.02 1.47 16 50 H 0.40 6.96 9.12 -74.06 -0.68 6.28 16 51 H 0.06 2.15 6.49 -2.39 -0.02 2.14 16 52 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 53 H 0.25 16.46 8.73 -92.71 -0.81 15.65 16 54 H 0.06 2.30 8.12 -2.39 -0.02 2.28 16 55 H 0.03 1.67 3.91 -2.38 -0.01 1.66 16 Total: -1.00 -81.82 408.41 -0.17 -81.99 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: -0.70 Total: 19.70 kcal Atomic # 6 Polarization: -10.12 SS G_CDS: 5.32 Total: -4.80 kcal Atomic # 7 Polarization: -112.64 SS G_CDS: -4.43 Total: -117.08 kcal Atomic # 8 Polarization: -38.59 SS G_CDS: -2.08 Total: -40.67 kcal Atomic # 14 Polarization: 59.13 SS G_CDS: 1.72 Total: 60.85 kcal Total: -81.82 -0.17 -81.99 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717508675.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.272 kcal (2) G-P(sol) polarization free energy of solvation -81.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.990 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds