Wall clock time and date at job start Tue Mar 31 2020 22:17:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52998 * 109.46842 * 2 1 4 4 H 1.09001 * 109.47335 * 54.99809 * 3 2 1 5 5 C 1.53002 * 109.46845 * 294.99734 * 3 2 1 6 6 C 1.53007 * 109.46772 * 180.02562 * 5 3 2 7 7 C 1.52995 * 109.46990 * 59.99954 * 6 5 3 8 8 C 1.52999 * 109.47592 * 299.99975 * 7 6 5 9 9 C 1.52995 * 109.47179 * 59.99824 * 8 7 6 10 10 H 1.09001 * 109.46978 * 60.00371 * 9 8 7 11 11 O 1.42899 * 109.47507 * 180.02562 * 9 8 7 12 12 C 1.42905 * 113.99866 * 270.00102 * 11 9 8 13 13 C 1.50691 * 109.47342 * 179.97438 * 12 11 9 14 14 O 1.21290 * 119.99953 * 0.02562 * 13 12 11 15 15 N 1.34774 * 120.00589 * 180.02562 * 13 12 11 16 16 C 1.46503 * 120.00405 * 180.02562 * 15 13 12 17 17 H 1.08993 * 112.84930 * 23.80078 * 16 15 13 18 18 C 1.53780 * 113.61094 * 154.99915 * 16 15 13 19 19 C 1.53782 * 87.07932 * 89.20150 * 18 16 15 20 20 H 1.09002 * 113.60994 * 270.79365 * 19 18 16 21 21 C 1.52998 * 113.61474 * 139.97980 * 19 18 16 22 22 N 1.46506 * 109.47237 * 174.99495 * 21 19 18 23 23 C 1.36939 * 120.00073 * 179.72302 * 22 21 19 24 24 H 1.08004 * 119.99859 * 0.02562 * 23 22 21 25 25 C 1.38805 * 119.99849 * 180.02562 * 23 22 21 26 26 N 1.31622 * 120.00455 * 359.97438 * 25 23 22 27 27 Si 1.86801 * 120.00168 * 180.02562 * 25 23 22 28 28 H 1.48498 * 109.46991 * 59.99625 * 27 25 23 29 29 H 1.48497 * 109.47469 * 179.97438 * 27 25 23 30 30 H 1.48499 * 109.46948 * 299.99895 * 27 25 23 31 31 C 1.53778 * 87.08334 * 25.42942 * 19 18 16 32 32 H 1.09004 * 109.46799 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.46975 * 299.99909 * 1 2 3 34 34 H 1.08996 * 109.46851 * 60.00841 * 1 2 3 35 35 H 1.08999 * 109.47282 * 239.99640 * 2 1 3 36 36 H 1.09004 * 109.46834 * 120.00023 * 2 1 3 37 37 H 1.09001 * 109.47215 * 300.00148 * 5 3 2 38 38 H 1.09003 * 109.47333 * 60.00427 * 5 3 2 39 39 H 1.09004 * 109.46602 * 180.02562 * 6 5 3 40 40 H 1.09001 * 109.47236 * 299.99969 * 6 5 3 41 41 H 1.09001 * 109.47119 * 59.99943 * 7 6 5 42 42 H 1.09001 * 109.47047 * 179.97438 * 7 6 5 43 43 H 1.09001 * 109.46862 * 300.00125 * 8 7 6 44 44 H 1.08997 * 109.47109 * 180.02562 * 8 7 6 45 45 H 1.09000 * 109.46960 * 59.99392 * 12 11 9 46 46 H 1.08998 * 109.46851 * 300.00208 * 12 11 9 47 47 H 0.97001 * 119.99180 * 0.02562 * 15 13 12 48 48 H 1.08995 * 113.61701 * 334.65000 * 18 16 15 49 49 H 1.09002 * 113.68456 * 203.75702 * 18 16 15 50 50 H 1.09001 * 109.47671 * 54.99835 * 21 19 18 51 51 H 1.08998 * 109.47454 * 294.99833 * 21 19 18 52 52 H 0.97005 * 119.99811 * 0.02562 * 22 21 19 53 53 H 0.97000 * 120.00679 * 179.97438 * 26 25 23 54 54 H 1.08991 * 113.61424 * 89.11685 * 31 19 18 55 55 H 1.09002 * 113.61088 * 220.02241 * 31 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6353 2.1265 -1.3074 6 6 2.1458 3.5688 -1.3077 7 6 3.6706 3.5701 -1.1822 8 6 4.0754 2.8861 0.1252 9 6 3.5649 1.4439 0.1255 10 1 3.9992 0.9046 -0.7163 11 8 3.9424 0.8051 1.3468 12 6 5.2115 0.1504 1.2921 13 6 5.5071 -0.4845 2.6263 14 8 4.7093 -0.3865 3.5346 15 7 6.6579 -1.1614 2.8105 16 6 6.9450 -1.7791 4.1075 17 1 6.0446 -1.9898 4.6845 18 6 7.9143 -2.9699 4.0215 19 6 9.0547 -1.9530 4.1959 20 1 9.4200 -1.5412 3.2551 21 6 10.1815 -2.4459 5.1060 22 7 11.2683 -1.4634 5.1134 23 6 12.3891 -1.6879 5.8674 24 1 12.4721 -2.5895 6.4563 25 6 13.4185 -0.7568 5.8749 26 7 13.3177 0.3416 5.1568 27 14 14.9478 -1.0634 6.9029 28 1 15.6025 -2.3185 6.4542 29 1 15.8905 0.0721 6.7386 30 1 14.5664 -1.1879 8.3326 31 6 8.0353 -1.0507 4.9110 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5137 -0.8900 35 1 1.8935 -0.5139 -0.8899 36 1 1.8934 -0.5139 0.8900 37 1 2.0699 1.5874 -2.1492 38 1 0.5489 2.1252 -1.3970 39 1 1.8570 4.0562 -2.2389 40 1 1.7115 4.1082 -0.4659 41 1 4.1049 3.0308 -2.0240 42 1 4.0343 4.5977 -1.1828 43 1 3.6411 3.4255 0.9670 44 1 5.1617 2.8875 0.2147 45 1 5.9868 0.8798 1.0574 46 1 5.1906 -0.6186 0.5200 47 1 7.2961 -1.2394 2.0842 48 1 7.9143 -3.4637 3.0498 49 1 7.8227 -3.6699 4.8521 50 1 10.5568 -3.3999 4.7357 51 1 9.8005 -2.5739 6.1192 52 1 11.1920 -0.6518 4.5876 53 1 14.0369 0.9925 5.1623 54 1 7.9759 -1.2251 5.9852 55 1 8.1329 0.0048 4.6572 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001717641084.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:17:46 Heat of formation + Delta-G solvation = -102.490536 kcal Electronic energy + Delta-G solvation = -29366.488310 eV Core-core repulsion = 25402.226301 eV Total energy + Delta-G solvation = -3964.262009 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.35328 -40.51318 -39.41492 -37.37059 -36.32316 -34.84071 -34.47649 -32.82487 -31.09300 -30.01938 -29.01102 -27.87516 -26.63057 -25.17371 -24.79703 -23.20235 -22.92351 -22.06303 -21.56864 -20.81425 -20.32370 -19.06564 -18.37572 -17.74821 -17.09791 -16.89444 -16.65055 -16.28498 -15.81732 -15.71579 -15.59353 -15.36106 -15.14714 -15.05314 -14.74456 -14.51973 -14.23293 -14.15702 -13.90971 -13.69799 -13.58789 -13.37207 -13.15648 -13.10016 -12.89330 -12.67259 -12.54484 -12.35922 -12.23125 -12.06528 -11.96830 -11.92330 -11.73872 -11.66685 -11.41417 -11.35427 -11.26938 -11.15030 -11.09114 -10.86831 -10.81804 -10.35874 -10.05818 -8.97431 -7.94802 -5.23020 1.46880 1.50034 1.53241 1.56111 1.78455 2.56356 2.94177 3.37880 3.58665 3.59110 3.63071 3.73769 3.80273 3.93712 3.95225 3.98253 4.12654 4.19076 4.24259 4.29354 4.30854 4.33814 4.36683 4.49871 4.51705 4.56946 4.58344 4.76382 4.76945 4.82623 4.84861 4.89884 4.91456 4.92647 4.99146 4.99238 5.10847 5.15219 5.16322 5.20362 5.25851 5.27538 5.30684 5.35810 5.36255 5.39756 5.49015 5.50219 5.57050 5.67201 6.17342 6.27906 6.54928 7.21356 7.33888 8.12101 8.34470 9.28504 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018876 B = 0.001743 C = 0.001624 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1483.002957 B =16064.597414 C =17235.794311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.117 4.117 3 C -0.081 4.081 4 H 0.058 0.942 5 C -0.107 4.107 6 C -0.123 4.123 7 C -0.113 4.113 8 C -0.144 4.144 9 C 0.092 3.908 10 H 0.080 0.920 11 O -0.384 6.384 12 C 0.046 3.954 13 C 0.512 3.488 14 O -0.574 6.574 15 N -0.697 5.697 16 C 0.126 3.874 17 H 0.090 0.910 18 C -0.114 4.114 19 C -0.109 4.109 20 H 0.089 0.911 21 C 0.159 3.841 22 N -0.745 5.745 23 C -0.247 4.247 24 H 0.075 0.925 25 C -0.077 4.077 26 N -0.970 5.970 27 Si 0.974 3.026 28 H -0.276 1.276 29 H -0.295 1.295 30 H -0.279 1.279 31 C -0.144 4.144 32 H 0.055 0.945 33 H 0.044 0.956 34 H 0.068 0.932 35 H 0.070 0.930 36 H 0.046 0.954 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.077 0.923 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.068 0.932 43 H 0.053 0.947 44 H 0.064 0.936 45 H 0.099 0.901 46 H 0.112 0.888 47 H 0.417 0.583 48 H 0.095 0.905 49 H 0.105 0.895 50 H 0.023 0.977 51 H 0.018 0.982 52 H 0.373 0.627 53 H 0.251 0.749 54 H 0.083 0.917 55 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.768 0.359 -19.151 32.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.099 4.099 4 H 0.076 0.924 5 C -0.145 4.145 6 C -0.160 4.160 7 C -0.151 4.151 8 C -0.181 4.181 9 C 0.034 3.966 10 H 0.098 0.902 11 O -0.303 6.303 12 C -0.033 4.033 13 C 0.299 3.701 14 O -0.452 6.452 15 N -0.350 5.350 16 C 0.020 3.980 17 H 0.108 0.892 18 C -0.153 4.153 19 C -0.128 4.128 20 H 0.107 0.893 21 C 0.032 3.968 22 N -0.387 5.387 23 C -0.379 4.379 24 H 0.093 0.907 25 C -0.270 4.270 26 N -0.620 5.620 27 Si 0.803 3.197 28 H -0.202 1.202 29 H -0.221 1.221 30 H -0.206 1.206 31 C -0.183 4.183 32 H 0.074 0.926 33 H 0.064 0.936 34 H 0.087 0.913 35 H 0.088 0.912 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.096 0.904 39 H 0.095 0.905 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.086 0.914 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.117 0.883 46 H 0.129 0.871 47 H 0.254 0.746 48 H 0.114 0.886 49 H 0.123 0.877 50 H 0.041 0.959 51 H 0.036 0.964 52 H 0.205 0.795 53 H 0.060 0.940 54 H 0.101 0.899 55 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -26.366 0.322 -18.232 32.058 hybrid contribution 1.610 0.529 0.461 1.756 sum -24.756 0.851 -17.772 30.487 Atomic orbital electron populations 1.21798 0.95239 1.01798 1.01950 1.21487 0.96430 0.95830 1.01696 1.21231 0.92902 0.96835 0.98955 0.92383 1.21604 1.01635 0.95375 0.95866 1.21591 0.95349 0.96810 1.02284 1.21485 0.96358 1.00812 0.96448 1.22058 1.01023 0.96043 0.99024 1.22366 0.95704 0.92535 0.85946 0.90190 1.88023 1.34769 1.71283 1.36231 1.22336 0.88405 0.98468 0.94138 1.20902 0.81009 0.77948 0.90245 1.90708 1.48691 1.60354 1.45451 1.45481 1.20525 1.54272 1.14738 1.21739 0.97274 0.94244 0.84695 0.89161 1.23216 0.92117 0.95446 1.04499 1.22681 0.93578 0.97726 0.98809 0.89286 1.20840 0.87629 0.91852 0.96434 1.42572 1.17320 1.22983 1.55846 1.19636 0.95281 1.03327 1.19686 0.90745 1.25576 1.02021 0.97002 1.02356 1.69808 1.34447 1.11560 1.46229 0.85204 0.79202 0.76766 0.78553 1.20225 1.22138 1.20569 1.23426 0.96120 0.98838 0.99939 0.92627 0.93646 0.91289 0.91164 0.93474 0.90726 0.90445 0.90475 0.92671 0.90760 0.91367 0.92845 0.91707 0.88335 0.87077 0.74604 0.88643 0.87682 0.95899 0.96381 0.79534 0.94047 0.89893 0.93094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.67 71.99 0.70 -1.21 16 2 C -0.12 -1.72 5.33 30.60 0.16 -1.56 16 3 C -0.08 -1.18 1.93 -10.79 -0.02 -1.20 16 4 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 5 C -0.11 -1.05 4.96 30.60 0.15 -0.89 16 6 C -0.12 -1.20 5.92 30.60 0.18 -1.02 16 7 C -0.11 -1.20 5.92 30.59 0.18 -1.02 16 8 C -0.14 -2.14 5.54 30.59 0.17 -1.97 16 9 C 0.09 1.42 2.04 30.59 0.06 1.48 16 10 H 0.08 0.91 7.79 -2.39 -0.02 0.90 16 11 O -0.38 -8.58 8.76 -129.94 -1.14 -9.72 16 12 C 0.05 0.80 6.23 71.23 0.44 1.24 16 13 C 0.51 12.82 7.91 87.65 0.69 13.51 16 14 O -0.57 -20.42 16.10 15.98 0.26 -20.16 16 15 N -0.70 -14.57 5.27 -440.05 -2.32 -16.89 16 16 C 0.13 3.08 4.32 45.52 0.20 3.28 16 17 H 0.09 2.45 7.46 -2.39 -0.02 2.43 16 18 C -0.11 -2.44 7.39 31.12 0.23 -2.21 16 19 C -0.11 -3.21 3.63 -10.27 -0.04 -3.25 16 20 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 21 C 0.16 6.18 6.10 86.38 0.53 6.71 16 22 N -0.74 -38.01 5.60 -343.44 -1.92 -39.94 16 23 C -0.25 -13.98 9.99 84.03 0.84 -13.14 16 24 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 25 C -0.08 -4.49 5.50 84.86 0.47 -4.03 16 26 N -0.97 -59.75 13.06 21.65 0.28 -59.47 16 27 Si 0.97 46.45 29.55 68.60 2.03 48.48 16 28 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 29 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 30 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 31 C -0.14 -4.33 7.43 31.12 0.23 -4.10 16 32 H 0.05 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.04 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.07 0.66 6.56 -2.39 -0.02 0.65 16 35 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.05 0.95 7.53 -2.39 -0.02 0.93 16 37 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 38 H 0.08 0.66 6.57 -2.39 -0.02 0.65 16 39 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 40 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 43 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 44 H 0.06 0.95 7.87 -2.39 -0.02 0.93 16 45 H 0.10 1.33 7.87 -2.39 -0.02 1.31 16 46 H 0.11 1.18 8.08 -2.39 -0.02 1.16 16 47 H 0.42 6.17 8.70 -92.71 -0.81 5.37 16 48 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.10 2.10 8.10 -2.39 -0.02 2.08 16 50 H 0.02 0.88 8.14 -2.39 -0.02 0.87 16 51 H 0.02 0.72 7.84 -2.39 -0.02 0.70 16 52 H 0.37 20.22 7.67 -92.70 -0.71 19.51 16 53 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 54 H 0.08 2.60 7.90 -2.39 -0.02 2.58 16 55 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 Total: -1.00 -75.03 429.55 1.70 -73.33 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: -0.66 Total: 33.77 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 5.17 Total: -9.40 kcal Atomic # 7 Polarization: -112.33 SS G_CDS: -3.96 Total: -116.29 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: -0.88 Total: -29.88 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Total: -75.03 1.70 -73.33 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001717641084.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.158 kcal (2) G-P(sol) polarization free energy of solvation -75.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds