Wall clock time and date at job start Wed Apr 1 2020 00:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52996 * 109.47454 * 2 1 4 4 H 1.08997 * 109.47096 * 305.50174 * 3 2 1 5 5 O 1.42909 * 109.47123 * 65.49764 * 3 2 1 6 6 C 1.42890 * 114.00210 * 270.00140 * 5 3 2 7 7 C 1.54268 * 110.03455 * 267.91051 * 6 5 3 8 8 C 1.54969 * 104.16036 * 217.13818 * 7 6 5 9 9 C 1.54889 * 102.77500 * 37.88543 * 8 7 6 10 10 C 1.53872 * 110.03236 * 150.68903 * 6 5 3 11 11 C 1.50699 * 109.47216 * 185.49885 * 3 2 1 12 12 O 1.21274 * 120.00226 * 248.92877 * 11 3 2 13 13 N 1.34775 * 119.99669 * 68.93267 * 11 3 2 14 14 C 1.47018 * 125.64849 * 175.13618 * 13 11 3 15 15 C 1.54324 * 107.27480 * 181.10768 * 14 13 11 16 16 C 1.55159 * 102.94029 * 22.19221 * 15 14 13 17 17 H 1.08997 * 111.00393 * 82.61691 * 16 15 14 18 18 C 1.52999 * 111.00179 * 206.42535 * 16 15 14 19 19 C 1.52999 * 109.47524 * 293.54702 * 18 16 15 20 20 N 1.46501 * 109.47243 * 180.02562 * 19 18 16 21 21 C 1.36933 * 119.99822 * 180.02562 * 20 19 18 22 22 H 1.08006 * 120.00445 * 359.97438 * 21 20 19 23 23 C 1.38810 * 119.99889 * 179.97438 * 21 20 19 24 24 N 1.31617 * 120.00112 * 359.97438 * 23 21 20 25 25 Si 1.86808 * 119.99930 * 180.27472 * 23 21 20 26 26 H 1.48497 * 109.47102 * 269.72283 * 25 23 21 27 27 H 1.48503 * 109.47198 * 29.72278 * 25 23 21 28 28 H 1.48500 * 109.47254 * 149.72294 * 25 23 21 29 29 C 1.47422 * 125.65077 * 355.19389 * 13 11 3 30 30 H 1.08998 * 109.47266 * 59.99668 * 1 2 3 31 31 H 1.08995 * 109.47367 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46688 * 300.00334 * 1 2 3 33 33 H 1.08993 * 109.47109 * 239.99141 * 2 1 3 34 34 H 1.09004 * 109.47066 * 119.99929 * 2 1 3 35 35 H 1.09005 * 110.01744 * 29.30174 * 6 5 3 36 36 H 1.09001 * 110.48549 * 335.78296 * 7 6 5 37 37 H 1.08997 * 110.48998 * 98.42883 * 7 6 5 38 38 H 1.09000 * 110.71659 * 279.56943 * 8 7 6 39 39 H 1.08997 * 110.92140 * 156.29334 * 8 7 6 40 40 H 1.09009 * 110.48384 * 203.40574 * 9 8 7 41 41 H 1.08998 * 110.59997 * 80.82180 * 9 8 7 42 42 H 1.08997 * 110.03693 * 238.56997 * 10 6 5 43 43 H 1.09004 * 110.03305 * 0.02562 * 10 6 5 44 44 H 1.09001 * 109.88459 * 61.68923 * 14 13 11 45 45 H 1.09002 * 110.01753 * 300.59672 * 14 13 11 46 46 H 1.09007 * 110.72207 * 263.83251 * 15 14 13 47 47 H 1.08997 * 110.72584 * 140.56088 * 15 14 13 48 48 H 1.09003 * 109.46843 * 173.54901 * 18 16 15 49 49 H 1.08995 * 109.47491 * 53.55073 * 18 16 15 50 50 H 1.08995 * 109.47015 * 59.99935 * 19 18 16 51 51 H 1.09003 * 109.46853 * 300.00390 * 19 18 16 52 52 H 0.96995 * 119.99790 * 359.97438 * 20 19 18 53 53 H 0.96998 * 120.00121 * 180.02562 * 24 23 21 54 54 H 1.08999 * 110.37150 * 36.98462 * 29 13 11 55 55 H 1.08999 * 110.36960 * 274.66163 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.5986 1.9839 -0.8366 5 8 1.6721 2.0778 1.2260 6 6 0.4026 2.7322 1.1833 7 6 0.5830 4.2099 0.7785 8 6 -0.4681 4.9670 1.6290 9 6 -0.4227 4.2125 2.9809 10 6 -0.2370 2.7336 2.5828 11 6 3.5409 1.4446 -0.1361 12 8 4.2340 1.7915 0.7966 13 7 4.1130 1.0609 -1.2946 14 6 5.5507 1.1102 -1.5979 15 6 5.7319 0.6005 -3.0432 16 6 4.3304 0.8261 -3.6695 17 1 4.2137 1.8566 -4.0049 18 6 4.0789 -0.1531 -4.8179 19 6 5.0368 0.1555 -5.9703 20 7 4.7956 -0.7818 -7.0702 21 6 5.5397 -0.6982 -8.2166 22 1 6.3043 0.0590 -8.3102 23 6 5.3115 -1.5865 -9.2585 24 7 4.3802 -2.5095 -9.1443 25 14 6.3319 -1.4774 -10.8195 26 1 5.6634 -0.5688 -11.7853 27 1 7.6804 -0.9476 -10.4933 28 1 6.4631 -2.8289 -11.4206 29 6 3.4005 0.5235 -2.4681 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8898 34 1 1.8934 -0.5138 0.8900 35 1 -0.2534 2.2281 0.4735 36 1 1.5888 4.5521 1.0222 37 1 0.3813 4.3416 -0.2845 38 1 -1.4571 4.8909 1.1771 39 1 -0.1841 6.0112 1.7597 40 1 -1.3582 4.3467 3.5243 41 1 0.4193 4.5542 3.5827 42 1 -1.2037 2.2310 2.5521 43 1 0.4212 2.2355 3.2947 44 1 6.0975 0.4683 -0.9071 45 1 5.9140 2.1348 -1.5179 46 1 5.9910 -0.4583 -3.0491 47 1 6.4873 1.1863 -3.5669 48 1 3.0501 -0.0513 -5.1634 49 1 4.2460 -1.1723 -4.4696 50 1 6.0655 0.0537 -5.6248 51 1 4.8697 1.1747 -6.3187 52 1 4.1092 -1.4620 -6.9859 53 1 4.2210 -3.1305 -9.8722 54 1 2.4423 1.0275 -2.5938 55 1 3.2538 -0.5515 -2.3633 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724724076.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:33 Heat of formation + Delta-G solvation = -109.292887 kcal Electronic energy + Delta-G solvation = -30116.230863 eV Core-core repulsion = 26151.673882 eV Total energy + Delta-G solvation = -3964.556981 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.54215 -40.09224 -38.85195 -37.15421 -36.79366 -34.63536 -33.99605 -32.52679 -31.04468 -29.74249 -29.30442 -28.74934 -27.40622 -25.71469 -24.11052 -23.14946 -22.77531 -21.63599 -21.33245 -21.22381 -20.49394 -19.10715 -18.49260 -18.01075 -17.27516 -16.77560 -16.59711 -16.49091 -16.20019 -15.69501 -15.41888 -15.34574 -15.16202 -14.81783 -14.71147 -14.39994 -14.28075 -14.13121 -13.85763 -13.51819 -13.37683 -13.16340 -13.06244 -13.00010 -12.97002 -12.77944 -12.69219 -12.32504 -12.20827 -12.15189 -12.04650 -11.96563 -11.95342 -11.93583 -11.63936 -11.54777 -11.50822 -11.46107 -11.33640 -10.91648 -10.88613 -10.37366 -9.75280 -8.96205 -7.93656 -5.21618 1.44480 1.49019 1.50096 1.58552 1.64456 2.57438 2.77712 3.31257 3.40362 3.47670 3.61336 3.64521 3.76396 3.79193 3.81762 3.92872 4.00090 4.17995 4.22208 4.25708 4.30904 4.39858 4.45986 4.48241 4.51156 4.55594 4.57132 4.64520 4.72042 4.73472 4.77948 4.81866 4.87149 4.90514 4.92553 4.95873 4.99938 5.03636 5.05901 5.07650 5.15095 5.19547 5.23510 5.27349 5.29236 5.33398 5.43595 5.43867 5.50222 5.53207 6.18760 6.29810 6.41141 7.02895 7.35949 8.14069 8.35765 9.29845 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020012 B = 0.001876 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.852865 B =14920.547471 C =15292.495927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.141 4.141 3 C 0.083 3.917 4 H 0.105 0.895 5 O -0.375 6.375 6 C 0.068 3.932 7 C -0.154 4.154 8 C -0.119 4.119 9 C -0.124 4.124 10 C -0.123 4.123 11 C 0.523 3.477 12 O -0.575 6.575 13 N -0.614 5.614 14 C 0.108 3.892 15 C -0.121 4.121 16 C -0.086 4.086 17 H 0.092 0.908 18 C -0.100 4.100 19 C 0.150 3.850 20 N -0.749 5.749 21 C -0.245 4.245 22 H 0.074 0.926 23 C -0.077 4.077 24 N -0.968 5.968 25 Si 0.971 3.029 26 H -0.287 1.287 27 H -0.271 1.271 28 H -0.296 1.296 29 C 0.100 3.900 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.062 0.938 33 H 0.090 0.910 34 H 0.060 0.940 35 H 0.093 0.907 36 H 0.052 0.948 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.070 0.930 40 H 0.084 0.916 41 H 0.055 0.945 42 H 0.092 0.908 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.064 0.936 46 H 0.079 0.921 47 H 0.090 0.910 48 H 0.070 0.930 49 H 0.065 0.935 50 H 0.023 0.977 51 H 0.018 0.982 52 H 0.374 0.626 53 H 0.251 0.749 54 H 0.099 0.901 55 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.650 11.218 23.135 28.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.179 4.179 3 C 0.022 3.978 4 H 0.122 0.878 5 O -0.294 6.294 6 C 0.011 3.989 7 C -0.192 4.192 8 C -0.156 4.156 9 C -0.161 4.161 10 C -0.161 4.161 11 C 0.312 3.688 12 O -0.454 6.454 13 N -0.348 5.348 14 C -0.014 4.014 15 C -0.159 4.159 16 C -0.105 4.105 17 H 0.110 0.890 18 C -0.138 4.138 19 C 0.024 3.976 20 N -0.391 5.391 21 C -0.377 4.377 22 H 0.092 0.908 23 C -0.269 4.269 24 N -0.619 5.619 25 Si 0.800 3.200 26 H -0.214 1.214 27 H -0.196 1.196 28 H -0.222 1.222 29 C -0.021 4.021 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.081 0.919 33 H 0.108 0.892 34 H 0.079 0.921 35 H 0.111 0.889 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.102 0.898 39 H 0.089 0.911 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.110 0.890 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.082 0.918 46 H 0.098 0.902 47 H 0.109 0.891 48 H 0.089 0.911 49 H 0.084 0.916 50 H 0.041 0.959 51 H 0.036 0.964 52 H 0.206 0.794 53 H 0.060 0.940 54 H 0.117 0.883 55 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.054 11.505 23.795 29.050 hybrid contribution 0.650 -0.383 -1.089 1.325 sum -11.404 11.122 22.707 27.737 Atomic orbital electron populations 1.21936 0.93100 1.03471 1.02743 1.22051 0.98574 0.93670 1.03630 1.21953 0.89888 0.96398 0.89606 0.87754 1.88088 1.37838 1.71097 1.32338 1.23364 0.84141 0.92229 0.99126 1.22979 0.99841 0.95602 1.00762 1.22443 0.99078 0.99012 0.95092 1.22353 1.02183 0.94083 0.97508 1.22252 1.00791 0.98009 0.95002 1.20683 0.90943 0.76361 0.80808 1.90681 1.65691 1.49462 1.39532 1.48519 1.08953 1.63206 1.14125 1.21976 0.81101 1.01325 0.97048 1.22720 0.97941 1.02612 0.92647 1.22209 0.94572 1.00464 0.93281 0.88963 1.21487 0.99719 0.98950 0.93689 1.20826 0.97065 0.92178 0.87538 1.42610 1.43503 1.38157 1.14868 1.19637 1.12628 1.11888 0.93507 0.90770 1.25550 1.00881 0.98573 1.01893 1.69800 1.36675 1.21859 1.33604 0.85172 0.78620 0.76367 0.79801 1.21411 1.19550 1.22220 1.22683 0.96465 1.00114 0.82878 0.90964 0.91034 0.91887 0.89154 0.92076 0.88880 0.92893 0.90531 0.89753 0.91087 0.89767 0.92608 0.88974 0.91978 0.92033 0.91765 0.90218 0.89150 0.91124 0.91625 0.95925 0.96417 0.79382 0.94026 0.88261 0.89540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 8.60 71.98 0.62 -1.06 16 2 C -0.14 -2.18 5.54 30.59 0.17 -2.01 16 3 C 0.08 1.60 1.99 29.85 0.06 1.66 16 4 H 0.10 1.54 7.20 -2.39 -0.02 1.52 16 5 O -0.37 -8.53 9.03 -130.10 -1.17 -9.70 16 6 C 0.07 1.05 2.09 31.32 0.07 1.12 16 7 C -0.15 -2.33 6.56 31.70 0.21 -2.12 16 8 C -0.12 -1.34 6.91 31.91 0.22 -1.12 16 9 C -0.12 -1.48 6.83 31.67 0.22 -1.26 16 10 C -0.12 -1.66 6.49 31.32 0.20 -1.46 16 11 C 0.52 13.69 7.21 87.66 0.63 14.32 16 12 O -0.57 -20.55 16.86 15.87 0.27 -20.28 16 13 N -0.61 -13.38 3.33 -811.82 -2.70 -16.08 16 14 C 0.11 2.35 6.87 86.73 0.60 2.95 16 15 C -0.12 -2.42 5.59 31.78 0.18 -2.25 16 16 C -0.09 -1.68 3.07 -9.40 -0.03 -1.71 16 17 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 18 C -0.10 -2.61 4.84 30.59 0.15 -2.46 16 19 C 0.15 5.43 6.11 86.38 0.53 5.96 16 20 N -0.75 -36.63 5.60 -343.45 -1.92 -38.55 16 21 C -0.24 -13.42 9.99 84.03 0.84 -12.58 16 22 H 0.07 3.91 7.83 -2.91 -0.02 3.89 16 23 C -0.08 -4.35 5.50 84.86 0.47 -3.88 16 24 N -0.97 -58.25 13.06 21.65 0.28 -57.97 16 25 Si 0.97 45.46 29.55 68.60 2.03 47.48 16 26 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 27 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 28 H -0.30 -13.93 7.11 99.48 0.71 -13.22 16 29 C 0.10 1.68 4.86 86.86 0.42 2.10 16 30 H 0.07 0.59 8.04 -2.39 -0.02 0.57 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 0.70 5.81 -2.39 -0.01 0.68 16 33 H 0.09 1.21 5.75 -2.39 -0.01 1.20 16 34 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 35 H 0.09 1.06 5.31 -2.38 -0.01 1.04 16 36 H 0.05 1.07 8.08 -2.39 -0.02 1.05 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 41 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.09 0.85 8.14 -2.39 -0.02 0.84 16 43 H 0.06 1.06 7.96 -2.39 -0.02 1.04 16 44 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 45 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 46 H 0.08 1.65 8.01 -2.38 -0.02 1.63 16 47 H 0.09 1.75 8.13 -2.39 -0.02 1.73 16 48 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 49 H 0.07 1.74 8.11 -2.39 -0.02 1.72 16 50 H 0.02 0.82 7.51 -2.39 -0.02 0.80 16 51 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 52 H 0.37 19.35 7.67 -92.71 -0.71 18.64 16 53 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 54 H 0.10 1.24 7.21 -2.39 -0.02 1.22 16 55 H 0.09 1.33 7.23 -2.39 -0.02 1.31 16 Total: -1.00 -72.97 421.80 2.46 -70.51 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: 0.14 Total: 28.40 kcal Atomic # 6 Polarization: -9.35 SS G_CDS: 5.54 Total: -3.81 kcal Atomic # 7 Polarization: -108.26 SS G_CDS: -4.34 Total: -112.61 kcal Atomic # 8 Polarization: -29.08 SS G_CDS: -0.91 Total: -29.98 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -72.97 2.46 -70.51 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724724076.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.779 kcal (2) G-P(sol) polarization free energy of solvation -72.973 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds