Wall clock time and date at job start Wed Apr 1 2020 00:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47221 * 2 1 4 4 H 1.09005 * 109.47046 * 53.93123 * 3 2 1 5 5 O 1.42897 * 109.46989 * 293.93216 * 3 2 1 6 6 C 1.42903 * 114.00056 * 154.67685 * 5 3 2 7 7 C 1.54262 * 110.03652 * 272.58416 * 6 5 3 8 8 C 1.54967 * 104.16542 * 217.13636 * 7 6 5 9 9 C 1.54892 * 102.77416 * 37.88166 * 8 7 6 10 10 C 1.53876 * 110.03474 * 155.36331 * 6 5 3 11 11 C 1.50700 * 109.47317 * 173.92916 * 3 2 1 12 12 O 1.21276 * 119.99729 * 113.22625 * 11 3 2 13 13 N 1.34773 * 119.99842 * 293.22912 * 11 3 2 14 14 C 1.47020 * 125.65142 * 355.38388 * 13 11 3 15 15 C 1.54324 * 107.27178 * 181.10476 * 14 13 11 16 16 C 1.55156 * 102.94245 * 22.19267 * 15 14 13 17 17 H 1.08999 * 111.00602 * 82.60937 * 16 15 14 18 18 C 1.53004 * 111.00538 * 206.42636 * 16 15 14 19 19 C 1.53001 * 109.46749 * 293.54609 * 18 16 15 20 20 N 1.46497 * 109.47160 * 180.02562 * 19 18 16 21 21 C 1.36935 * 120.00048 * 179.97438 * 20 19 18 22 22 H 1.08001 * 120.00179 * 359.97438 * 21 20 19 23 23 C 1.38815 * 119.99800 * 179.97438 * 21 20 19 24 24 N 1.31621 * 120.00265 * 0.02562 * 23 21 20 25 25 Si 1.86803 * 119.99855 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.47180 * 90.00056 * 25 23 21 27 27 H 1.48499 * 109.46973 * 210.00115 * 25 23 21 28 28 H 1.48506 * 109.47031 * 330.00073 * 25 23 21 29 29 C 1.47425 * 125.64570 * 175.43532 * 13 11 3 30 30 H 1.08996 * 109.47083 * 65.00793 * 1 2 3 31 31 H 1.08997 * 109.46939 * 185.01171 * 1 2 3 32 32 H 1.09001 * 109.46903 * 305.00864 * 1 2 3 33 33 H 1.08994 * 109.46787 * 240.00126 * 2 1 3 34 34 H 1.09003 * 109.46992 * 120.00080 * 2 1 3 35 35 H 1.09005 * 110.01357 * 33.97425 * 6 5 3 36 36 H 1.09007 * 110.48132 * 335.78004 * 7 6 5 37 37 H 1.08995 * 110.48918 * 98.42391 * 7 6 5 38 38 H 1.09004 * 110.71400 * 279.57717 * 8 7 6 39 39 H 1.08997 * 110.92474 * 156.29044 * 8 7 6 40 40 H 1.09000 * 110.48595 * 203.40574 * 9 8 7 41 41 H 1.09004 * 110.59563 * 80.82350 * 9 8 7 42 42 H 1.09002 * 110.03479 * 238.57122 * 10 6 5 43 43 H 1.09000 * 110.02807 * 0.02562 * 10 6 5 44 44 H 1.08999 * 109.88393 * 61.68966 * 14 13 11 45 45 H 1.09002 * 110.01129 * 300.59671 * 14 13 11 46 46 H 1.09000 * 110.72322 * 263.82866 * 15 14 13 47 47 H 1.08996 * 110.72021 * 140.55354 * 15 14 13 48 48 H 1.08997 * 109.47191 * 53.54381 * 18 16 15 49 49 H 1.08995 * 109.47106 * 173.54917 * 18 16 15 50 50 H 1.09007 * 109.47189 * 299.99864 * 19 18 16 51 51 H 1.09002 * 109.47401 * 59.99732 * 19 18 16 52 52 H 0.97001 * 120.00093 * 359.97438 * 20 19 18 53 53 H 0.97004 * 120.00010 * 179.97438 * 24 23 21 54 54 H 1.09005 * 110.36846 * 36.98929 * 29 13 11 55 55 H 1.08998 * 110.37125 * 274.66835 * 29 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5907 1.9867 0.8307 5 8 1.6836 2.0737 -1.2314 6 6 1.5787 3.4963 -1.1463 7 6 0.1543 3.8961 -0.7093 8 6 -0.1436 5.1835 -1.5188 9 6 0.5135 4.8858 -2.8895 10 6 1.8073 4.1256 -2.5318 11 6 3.5395 1.4452 0.1503 12 8 4.2398 1.8262 -0.7637 13 7 4.1023 1.0241 1.3002 14 6 3.3753 0.6288 2.5155 15 6 4.4294 0.2501 3.5771 16 6 5.6998 0.9934 3.0861 17 1 5.6918 2.0349 3.4074 18 6 6.9689 0.2849 3.5640 19 6 7.0656 0.3847 5.0877 20 7 8.2810 -0.2932 5.5453 21 6 8.5810 -0.3335 6.8807 22 1 7.9218 0.1348 7.5967 23 6 9.7325 -0.9763 7.3143 24 7 10.5362 -1.5465 6.4418 25 14 10.1413 -1.0319 9.1362 26 1 9.5347 -2.2440 9.7429 27 1 11.6153 -1.0754 9.3116 28 1 9.5991 0.1795 9.8024 29 6 5.5488 0.8847 1.5482 30 1 -0.3633 0.4342 -0.9314 31 1 -0.3633 -1.0237 0.0898 32 1 -0.3633 0.5896 0.8417 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.3094 3.8824 -0.4356 36 1 -0.5576 3.1113 -0.9654 37 1 0.1273 4.1025 0.3606 38 1 0.3201 6.0506 -1.0484 39 1 -1.2174 5.3339 -1.6297 40 1 0.7481 5.8144 -3.4098 41 1 -0.1391 4.2618 -3.5002 42 1 2.6485 4.8178 -2.4933 43 1 1.9979 3.3458 -3.2691 44 1 2.7379 -0.2295 2.3035 45 1 2.7694 1.4606 2.8749 46 1 4.5939 -0.8273 3.5902 47 1 4.1301 0.6076 4.5623 48 1 6.9319 -0.7641 3.2702 49 1 7.8410 0.7581 3.1128 50 1 7.1026 1.4337 5.3815 51 1 6.1935 -0.0885 5.5389 52 1 8.8734 -0.7135 4.9022 53 1 11.3410 -1.9954 6.7448 54 1 6.0973 1.6875 1.0555 55 1 5.9016 -0.0861 1.2001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724724079.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:02:47 Heat of formation + Delta-G solvation = -112.485651 kcal Electronic energy + Delta-G solvation = -30004.528019 eV Core-core repulsion = 26039.832589 eV Total energy + Delta-G solvation = -3964.695429 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -41.56669 -39.98680 -38.77442 -37.12266 -36.84407 -34.84048 -34.04583 -32.54816 -30.62243 -29.68874 -29.55126 -28.72699 -27.48515 -25.59572 -24.20321 -23.17698 -22.68324 -21.71196 -21.35481 -21.24073 -20.39463 -19.12346 -18.52291 -18.20024 -17.17450 -16.84460 -16.69191 -16.37399 -16.02625 -15.71219 -15.40212 -15.38416 -15.18058 -15.02007 -14.74127 -14.37103 -14.28541 -14.08878 -13.86390 -13.48347 -13.35329 -13.22058 -13.08726 -12.89083 -12.85456 -12.78213 -12.72778 -12.40356 -12.19690 -12.05317 -12.03872 -11.96732 -11.90815 -11.87629 -11.64320 -11.56487 -11.52868 -11.51333 -11.41550 -11.31151 -10.90842 -10.28968 -9.72450 -8.98880 -7.94667 -5.23684 1.43940 1.48030 1.50018 1.58440 1.80824 2.56760 2.60745 3.28672 3.39297 3.56340 3.59222 3.63742 3.68583 3.76424 3.86204 3.91544 3.98860 4.16107 4.17264 4.26367 4.33840 4.37876 4.45697 4.49514 4.50279 4.55193 4.58237 4.61282 4.68654 4.77433 4.77605 4.77873 4.85527 4.90360 4.90977 4.95518 5.01554 5.06903 5.09148 5.12707 5.18295 5.20182 5.22689 5.25716 5.30002 5.38719 5.41878 5.44966 5.46341 5.50749 6.11659 6.27902 6.44190 7.03268 7.33656 8.11291 8.32808 9.29061 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023997 B = 0.001776 C = 0.001748 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.520689 B =15760.334716 C =16012.336525 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.117 4.117 3 C 0.086 3.914 4 H 0.107 0.893 5 O -0.363 6.363 6 C 0.079 3.921 7 C -0.143 4.143 8 C -0.120 4.120 9 C -0.119 4.119 10 C -0.124 4.124 11 C 0.494 3.506 12 O -0.579 6.579 13 N -0.614 5.614 14 C 0.092 3.908 15 C -0.124 4.124 16 C -0.084 4.084 17 H 0.088 0.912 18 C -0.103 4.103 19 C 0.154 3.846 20 N -0.751 5.751 21 C -0.245 4.245 22 H 0.078 0.922 23 C -0.080 4.080 24 N -0.971 5.971 25 Si 0.975 3.025 26 H -0.285 1.285 27 H -0.297 1.297 28 H -0.268 1.268 29 C 0.109 3.891 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.099 0.901 35 H 0.046 0.954 36 H 0.081 0.919 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.061 0.939 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.080 0.920 47 H 0.099 0.901 48 H 0.063 0.937 49 H 0.054 0.946 50 H 0.017 0.983 51 H 0.033 0.967 52 H 0.372 0.628 53 H 0.251 0.749 54 H 0.060 0.940 55 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.937 9.802 -14.902 33.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C 0.025 3.975 4 H 0.125 0.875 5 O -0.281 6.281 6 C 0.022 3.978 7 C -0.180 4.180 8 C -0.158 4.158 9 C -0.157 4.157 10 C -0.161 4.161 11 C 0.283 3.717 12 O -0.459 6.459 13 N -0.349 5.349 14 C -0.029 4.029 15 C -0.161 4.161 16 C -0.103 4.103 17 H 0.106 0.894 18 C -0.141 4.141 19 C 0.028 3.972 20 N -0.394 5.394 21 C -0.377 4.377 22 H 0.096 0.904 23 C -0.272 4.272 24 N -0.622 5.622 25 Si 0.804 3.196 26 H -0.212 1.212 27 H -0.224 1.224 28 H -0.193 1.193 29 C -0.014 4.014 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.089 0.911 33 H 0.077 0.923 34 H 0.117 0.883 35 H 0.064 0.936 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.080 0.920 44 H 0.113 0.887 45 H 0.110 0.890 46 H 0.099 0.901 47 H 0.118 0.882 48 H 0.082 0.918 49 H 0.073 0.927 50 H 0.035 0.965 51 H 0.051 0.949 52 H 0.204 0.796 53 H 0.059 0.941 54 H 0.078 0.922 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -28.713 9.991 -15.468 34.110 hybrid contribution 1.613 -0.229 0.670 1.761 sum -27.100 9.761 -14.798 32.384 Atomic orbital electron populations 1.21685 0.92613 1.02944 1.02634 1.21680 0.98652 0.91400 1.03671 1.22190 0.87977 0.97854 0.89515 0.87532 1.88041 1.88311 1.20177 1.31559 1.22968 0.96926 0.80093 0.97824 1.22930 0.95496 0.98887 1.00705 1.22457 1.01559 0.96875 0.94883 1.22340 0.95341 1.00098 0.97878 1.22180 0.99124 0.99127 0.95707 1.21887 0.92655 0.76433 0.80679 1.90687 1.65339 1.48844 1.41003 1.48679 1.07939 1.65006 1.13297 1.22487 0.95416 1.01731 0.83247 1.22756 0.92943 1.01380 0.99041 1.22154 0.94847 1.00630 0.92694 0.89402 1.21493 0.97046 1.00539 0.95018 1.20800 0.88522 0.94732 0.93131 1.42653 1.25531 1.66440 1.04730 1.19672 1.04556 1.27988 0.85457 0.90390 1.25620 0.97944 1.01525 1.02067 1.69827 1.15141 1.42846 1.34403 0.85113 0.76494 0.78076 0.79914 1.21225 1.22365 1.19314 1.22240 0.81630 1.01346 0.96202 0.92793 0.91099 0.91109 0.92261 0.88284 0.93600 0.90010 0.90383 0.91044 0.89728 0.90531 0.91112 0.91638 0.92014 0.88676 0.89045 0.90131 0.88217 0.91790 0.92703 0.96507 0.94941 0.79638 0.94063 0.92188 0.91497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.40 9.77 71.98 0.70 -0.69 16 2 C -0.12 -1.63 5.55 30.59 0.17 -1.46 16 3 C 0.09 1.55 1.75 29.85 0.05 1.60 16 4 H 0.11 1.37 7.73 -2.38 -0.02 1.35 16 5 O -0.36 -7.91 8.79 -130.03 -1.14 -9.05 16 6 C 0.08 1.47 3.08 31.32 0.10 1.57 16 7 C -0.14 -1.73 6.43 31.69 0.20 -1.53 16 8 C -0.12 -1.23 6.91 31.91 0.22 -1.01 16 9 C -0.12 -1.49 6.83 31.67 0.22 -1.27 16 10 C -0.12 -2.27 6.61 31.32 0.21 -2.06 16 11 C 0.49 12.53 6.92 87.66 0.61 13.13 16 12 O -0.58 -20.37 16.68 15.93 0.27 -20.10 16 13 N -0.61 -13.21 3.32 -811.80 -2.70 -15.90 16 14 C 0.09 1.28 6.14 86.73 0.53 1.81 16 15 C -0.12 -2.10 5.59 31.78 0.18 -1.93 16 16 C -0.08 -1.89 3.07 -9.40 -0.03 -1.91 16 17 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 18 C -0.10 -3.07 4.84 30.60 0.15 -2.92 16 19 C 0.15 5.81 6.11 86.38 0.53 6.33 16 20 N -0.75 -38.05 5.60 -343.44 -1.92 -39.97 16 21 C -0.24 -13.63 9.99 84.03 0.84 -12.79 16 22 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 23 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 24 N -0.97 -59.85 13.06 21.65 0.28 -59.56 16 25 Si 0.98 45.90 29.55 68.60 2.03 47.93 16 26 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 27 H -0.30 -14.13 7.11 99.48 0.71 -13.43 16 28 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 29 C 0.11 2.65 6.40 86.86 0.56 3.21 16 30 H 0.05 0.65 7.98 -2.39 -0.02 0.63 16 31 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 32 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.10 1.07 5.29 -2.39 -0.01 1.06 16 35 H 0.05 0.96 7.74 -2.38 -0.02 0.94 16 36 H 0.08 0.97 8.08 -2.38 -0.02 0.95 16 37 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 39 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 41 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.06 1.33 7.95 -2.39 -0.02 1.31 16 44 H 0.10 0.93 5.73 -2.39 -0.01 0.92 16 45 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 46 H 0.08 1.45 8.01 -2.39 -0.02 1.43 16 47 H 0.10 1.49 8.13 -2.39 -0.02 1.47 16 48 H 0.06 1.94 8.11 -2.39 -0.02 1.93 16 49 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.02 0.64 8.14 -2.38 -0.02 0.62 16 51 H 0.03 1.16 7.51 -2.39 -0.02 1.14 16 52 H 0.37 20.21 7.67 -92.71 -0.71 19.50 16 53 H 0.25 14.97 8.31 -92.71 -0.77 14.20 16 54 H 0.06 1.67 7.99 -2.38 -0.02 1.65 16 55 H 0.07 1.68 8.04 -2.39 -0.02 1.66 16 Total: -1.00 -74.00 427.78 2.63 -71.37 By element: Atomic # 1 Polarization: 29.21 SS G_CDS: 0.13 Total: 29.34 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: 5.70 Total: -4.04 kcal Atomic # 7 Polarization: -111.10 SS G_CDS: -4.34 Total: -115.44 kcal Atomic # 8 Polarization: -28.28 SS G_CDS: -0.88 Total: -29.16 kcal Atomic # 14 Polarization: 45.90 SS G_CDS: 2.03 Total: 47.93 kcal Total: -74.00 2.63 -71.37 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724724079.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.117 kcal (2) G-P(sol) polarization free energy of solvation -74.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.368 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds