Wall clock time and date at job start Tue Mar 31 2020 23:35:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53004 * 109.47253 * 2 1 4 4 H 1.08992 * 109.47341 * 304.16145 * 3 2 1 5 5 C 1.53007 * 109.47041 * 184.16076 * 3 2 1 6 6 C 1.50697 * 109.46725 * 162.80864 * 5 3 2 7 7 O 1.21279 * 120.00567 * 351.95854 * 6 5 3 8 8 N 1.34774 * 119.99638 * 171.96174 * 6 5 3 9 9 C 1.46503 * 120.00058 * 180.02562 * 8 6 5 10 10 C 1.52998 * 109.47241 * 179.97438 * 9 8 6 11 11 H 1.08996 * 110.34743 * 304.32878 * 10 9 8 12 12 C 1.55021 * 110.30184 * 182.20310 * 10 9 8 13 13 C 1.55485 * 101.04416 * 205.04364 * 12 10 9 14 14 C 1.53655 * 101.96844 * 33.48868 * 13 12 10 15 15 C 1.52700 * 115.26488 * 206.89917 * 14 13 12 16 16 N 1.47212 * 87.79637 * 219.25082 * 15 14 13 17 17 C 1.36934 * 135.97764 * 206.45099 * 16 15 14 18 18 H 1.08003 * 119.99530 * 5.79790 * 17 16 15 19 19 C 1.38806 * 120.00705 * 185.78979 * 17 16 15 20 20 N 1.31619 * 120.00277 * 203.26979 * 19 17 16 21 21 Si 1.86799 * 119.99603 * 23.26710 * 19 17 16 22 22 H 1.48503 * 109.47238 * 269.99885 * 21 19 17 23 23 H 1.48503 * 109.47453 * 150.00035 * 21 19 17 24 24 H 1.48506 * 109.47431 * 29.99900 * 21 19 17 25 25 C 1.47209 * 88.05385 * 26.71615 * 16 15 14 26 26 O 1.42391 * 108.53629 * 339.13010 * 14 13 12 27 27 C 1.52999 * 109.46992 * 64.16722 * 3 2 1 28 28 C 1.52999 * 109.47031 * 67.04827 * 27 3 2 29 29 C 1.52993 * 109.47117 * 187.05009 * 27 3 2 30 30 H 1.08993 * 109.47392 * 183.57606 * 1 2 3 31 31 H 1.09001 * 109.47023 * 303.58244 * 1 2 3 32 32 H 1.09001 * 109.47030 * 63.57437 * 1 2 3 33 33 H 1.09008 * 109.46926 * 240.00432 * 2 1 3 34 34 H 1.08992 * 109.47316 * 120.00632 * 2 1 3 35 35 H 1.09003 * 109.46635 * 42.81468 * 5 3 2 36 36 H 1.08997 * 109.47057 * 282.81407 * 5 3 2 37 37 H 0.96996 * 120.00251 * 359.97438 * 8 6 5 38 38 H 1.08996 * 109.47816 * 59.99108 * 9 8 6 39 39 H 1.09008 * 109.46684 * 299.99534 * 9 8 6 40 40 H 1.09000 * 111.10637 * 322.99511 * 12 10 9 41 41 H 1.09000 * 111.10025 * 87.05762 * 12 10 9 42 42 H 1.08997 * 110.93556 * 275.31824 * 13 12 10 43 43 H 1.09003 * 110.92450 * 151.65416 * 13 12 10 44 44 H 1.08998 * 113.49619 * 104.52043 * 15 14 13 45 45 H 1.09001 * 113.55820 * 333.99333 * 15 14 13 46 46 H 0.96991 * 119.99996 * 354.96577 * 20 19 17 47 47 H 1.08996 * 113.50356 * 88.01417 * 25 16 15 48 48 H 1.09005 * 113.49917 * 218.55931 * 25 16 15 49 49 H 1.09000 * 109.46956 * 307.05435 * 27 3 2 50 50 H 1.08992 * 109.47243 * 67.29423 * 28 27 3 51 51 H 1.09007 * 109.46815 * 187.29114 * 28 27 3 52 52 H 1.09001 * 109.47385 * 307.28472 * 28 27 3 53 53 H 1.09002 * 109.46989 * 51.66344 * 29 27 3 54 54 H 1.09010 * 109.46921 * 171.65961 * 29 27 3 55 55 H 1.08996 * 109.47237 * 291.65631 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6171 1.9774 -0.8503 5 6 3.5665 1.4437 -0.1047 6 6 4.0400 2.8112 -0.5250 7 8 3.2360 3.6543 -0.8623 8 7 5.3570 3.0974 -0.5262 9 6 5.8174 4.4270 -0.9343 10 6 7.3436 4.4878 -0.8452 11 1 7.6756 4.2214 0.1582 12 6 7.8482 5.9049 -1.2202 13 6 9.2924 5.5890 -1.7018 14 6 9.1191 4.2024 -2.3407 15 6 10.3690 3.3251 -2.3431 16 7 9.9850 2.8803 -3.6928 17 6 10.1942 1.7645 -4.4585 18 1 10.6945 0.9057 -4.0360 19 6 9.7632 1.7370 -5.7777 20 7 9.5344 0.5848 -6.3715 21 14 9.5077 3.3353 -6.7102 22 1 8.1095 3.7993 -6.5234 23 1 9.7662 3.1120 -8.1554 24 1 10.4443 4.3652 -6.1932 25 6 9.2831 4.1632 -3.8615 26 8 7.9361 3.6075 -1.8173 27 6 1.6174 2.1328 1.2983 28 6 2.3499 1.4916 2.4787 29 6 1.9723 3.6192 1.2245 30 1 -0.3634 -1.0256 0.0641 31 1 -0.3633 0.5684 0.8561 32 1 -0.3633 0.4574 -0.9203 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.8805 0.7072 -0.8444 36 1 3.9973 1.1919 0.8644 37 1 6.0001 2.4233 -0.2561 38 1 5.3850 5.1795 -0.2750 39 1 5.5050 4.6204 -1.9606 40 1 7.2510 6.3340 -2.0247 41 1 7.8586 6.5607 -0.3496 42 1 9.9831 5.5462 -0.8597 43 1 9.6251 6.3190 -2.4397 44 1 10.3425 2.5289 -1.5992 45 1 11.2995 3.8924 -2.3208 46 1 9.7362 -0.2456 -5.9128 47 1 9.9187 4.9586 -4.2506 48 1 8.3394 4.0749 -4.3998 49 1 0.5417 2.0224 1.4350 50 1 3.4148 1.7135 2.4093 51 1 1.9553 1.8926 3.4123 52 1 2.2013 0.4120 2.4554 53 1 1.5720 4.0430 0.3034 54 1 1.5414 4.1386 2.0806 55 1 3.0560 3.7351 1.2370 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724876085.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:44 Heat of formation + Delta-G solvation = -59.438088 kcal Electronic energy + Delta-G solvation = -30900.736487 eV Core-core repulsion = 26938.341373 eV Total energy + Delta-G solvation = -3962.395114 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.61012 -41.13582 -38.70614 -38.04833 -35.59875 -34.48175 -33.26827 -33.15403 -31.72908 -30.49574 -28.59285 -28.00024 -27.01114 -26.04387 -24.67789 -23.19348 -22.75550 -22.52853 -21.35680 -20.78411 -19.54790 -19.51328 -18.04554 -17.85117 -17.35920 -17.18866 -16.98104 -16.12084 -15.79481 -15.74713 -15.53435 -15.34017 -15.20838 -15.06708 -14.69444 -14.43533 -14.31949 -14.03582 -13.79674 -13.65111 -13.38353 -13.34103 -13.25442 -12.93078 -12.68822 -12.62489 -12.50719 -12.39784 -12.26488 -12.22006 -12.11083 -11.91726 -11.85521 -11.73738 -11.48977 -11.35599 -11.33217 -11.19316 -11.00193 -10.70960 -10.63867 -10.28340 -9.98556 -9.26310 -8.66044 -5.42179 1.35000 1.45692 1.61754 1.71978 2.24206 2.51295 2.63982 3.01421 3.15542 3.48942 3.62316 3.72726 3.75921 3.82956 3.85367 3.91426 4.12512 4.15352 4.32944 4.39133 4.43012 4.48257 4.53106 4.54266 4.55790 4.59004 4.62927 4.67532 4.74243 4.78350 4.82524 4.83482 4.87552 4.92249 4.93290 4.95959 5.04623 5.06277 5.12471 5.14160 5.17661 5.23437 5.24762 5.30371 5.36064 5.37841 5.44589 5.46429 5.62191 5.71191 5.94534 6.27574 6.58223 6.68897 7.31634 7.34766 8.30140 8.86271 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012571 B = 0.002773 C = 0.002454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2226.873570 B =10095.404523 C =11407.525992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.069 4.069 4 H 0.057 0.943 5 C -0.142 4.142 6 C 0.506 3.494 7 O -0.568 6.568 8 N -0.725 5.725 9 C 0.127 3.873 10 C 0.061 3.939 11 H 0.099 0.901 12 C -0.137 4.137 13 C -0.127 4.127 14 C 0.090 3.910 15 C 0.109 3.891 16 N -0.652 5.652 17 C -0.294 4.294 18 H 0.047 0.953 19 C -0.083 4.083 20 N -0.963 5.963 21 Si 1.099 2.901 22 H -0.286 1.286 23 H -0.297 1.297 24 H -0.255 1.255 25 C 0.087 3.913 26 O -0.367 6.367 27 C -0.088 4.088 28 C -0.150 4.150 29 C -0.133 4.133 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.044 0.956 33 H 0.057 0.943 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.118 0.882 37 H 0.410 0.590 38 H 0.094 0.906 39 H 0.045 0.955 40 H 0.078 0.922 41 H 0.120 0.880 42 H 0.106 0.894 43 H 0.099 0.901 44 H 0.042 0.958 45 H 0.074 0.926 46 H 0.247 0.753 47 H 0.073 0.927 48 H 0.033 0.967 49 H 0.077 0.923 50 H 0.055 0.945 51 H 0.058 0.942 52 H 0.068 0.932 53 H 0.046 0.954 54 H 0.044 0.956 55 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.416 9.335 22.346 27.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.157 4.157 3 C -0.088 4.088 4 H 0.075 0.925 5 C -0.181 4.181 6 C 0.295 3.705 7 O -0.448 6.448 8 N -0.377 5.377 9 C 0.003 3.997 10 C 0.003 3.997 11 H 0.117 0.883 12 C -0.175 4.175 13 C -0.165 4.165 14 C 0.049 3.951 15 C -0.016 4.016 16 N -0.381 5.381 17 C -0.422 4.422 18 H 0.065 0.935 19 C -0.276 4.276 20 N -0.608 5.608 21 Si 0.924 3.076 22 H -0.213 1.213 23 H -0.224 1.224 24 H -0.180 1.180 25 C -0.039 4.039 26 O -0.286 6.286 27 C -0.107 4.107 28 C -0.207 4.207 29 C -0.190 4.190 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.114 0.886 36 H 0.135 0.865 37 H 0.245 0.755 38 H 0.112 0.888 39 H 0.063 0.937 40 H 0.097 0.903 41 H 0.139 0.861 42 H 0.124 0.876 43 H 0.117 0.883 44 H 0.061 0.939 45 H 0.091 0.909 46 H 0.056 0.944 47 H 0.091 0.909 48 H 0.052 0.948 49 H 0.095 0.905 50 H 0.074 0.926 51 H 0.077 0.923 52 H 0.087 0.913 53 H 0.065 0.935 54 H 0.063 0.937 55 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -13.507 10.151 20.497 26.564 hybrid contribution 1.191 -1.568 0.786 2.120 sum -12.316 8.583 21.283 26.045 Atomic orbital electron populations 1.21816 0.95414 1.02005 1.01774 1.21630 0.96457 0.95086 1.02561 1.21012 0.92654 0.96690 0.98441 0.92455 1.21946 0.98126 0.93256 1.04783 1.21072 0.81804 0.90747 0.76902 1.90682 1.54153 1.50743 1.49188 1.46013 1.07677 1.15652 1.68315 1.21476 0.92711 0.85298 1.00176 1.23571 0.91573 0.91043 0.93467 0.88315 1.23263 0.95265 0.95424 1.03565 1.22921 0.98304 0.93274 1.02051 1.22830 0.86008 0.93403 0.92847 1.22949 0.96168 0.95739 0.86731 1.46206 1.61572 1.14333 1.15940 1.19880 1.37382 0.90489 0.94414 0.93490 1.26969 0.99240 1.06040 0.95324 1.71019 1.48873 0.97537 1.43386 0.83278 0.77182 0.72505 0.74641 1.21266 1.22423 1.17975 1.23239 0.95585 0.88261 0.96766 1.88423 1.39010 1.43737 1.57417 1.21148 1.00615 0.94514 0.94395 1.21977 1.00161 1.01283 0.97247 1.22002 1.00621 0.96124 1.00266 0.91958 0.91903 0.93688 0.92377 0.90246 0.88649 0.86454 0.75506 0.88779 0.93660 0.90343 0.86135 0.87554 0.88262 0.93931 0.90858 0.94411 0.90928 0.94841 0.90512 0.92642 0.92320 0.91263 0.93462 0.93745 0.93995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 9.74 71.98 0.70 -1.50 16 2 C -0.12 -1.85 5.25 30.60 0.16 -1.69 16 3 C -0.07 -1.31 1.66 -10.79 -0.02 -1.33 16 4 H 0.06 1.43 7.29 -2.39 -0.02 1.41 16 5 C -0.14 -2.72 5.03 29.85 0.15 -2.57 16 6 C 0.51 12.79 5.98 87.66 0.52 13.31 16 7 O -0.57 -17.73 11.95 -3.03 -0.04 -17.76 16 8 N -0.72 -17.03 5.54 -463.06 -2.56 -19.59 16 9 C 0.13 2.97 5.38 86.38 0.46 3.43 16 10 C 0.06 1.31 3.49 31.29 0.11 1.42 16 11 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 12 C -0.14 -2.27 6.58 32.14 0.21 -2.06 16 13 C -0.13 -2.50 6.39 31.67 0.20 -2.30 16 14 C 0.09 2.93 1.75 -10.67 -0.02 2.91 16 15 C 0.11 4.15 8.20 83.38 0.68 4.83 16 16 N -0.65 -32.97 3.62 -738.99 -2.67 -35.65 16 17 C -0.29 -17.94 10.95 84.03 0.92 -17.02 16 18 H 0.05 3.08 8.06 -2.91 -0.02 3.06 16 19 C -0.08 -5.20 5.50 84.86 0.47 -4.73 16 20 N -0.96 -64.61 13.70 21.65 0.30 -64.32 16 21 Si 1.10 55.75 25.60 68.60 1.76 57.51 16 22 H -0.29 -14.02 6.84 99.48 0.68 -13.34 16 23 H -0.30 -15.06 7.11 99.48 0.71 -14.36 16 24 H -0.26 -11.44 6.33 99.48 0.63 -10.81 16 25 C 0.09 3.60 5.19 83.48 0.43 4.04 16 26 O -0.37 -12.32 10.84 -148.98 -1.62 -13.93 16 27 C -0.09 -1.51 2.57 -10.80 -0.03 -1.53 16 28 C -0.15 -1.96 8.37 71.98 0.60 -1.36 16 29 C -0.13 -2.82 7.46 71.98 0.54 -2.28 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.83 6.24 -2.39 -0.01 0.81 16 32 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 33 H 0.06 0.96 8.07 -2.38 -0.02 0.94 16 34 H 0.08 1.00 6.33 -2.39 -0.02 0.98 16 35 H 0.10 1.84 7.97 -2.39 -0.02 1.82 16 36 H 0.12 1.70 5.59 -2.39 -0.01 1.69 16 37 H 0.41 8.61 8.47 -92.71 -0.79 7.83 16 38 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 39 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.08 1.40 8.05 -2.39 -0.02 1.38 16 41 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.11 1.60 8.13 -2.39 -0.02 1.58 16 43 H 0.10 1.74 7.81 -2.39 -0.02 1.73 16 44 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 45 H 0.07 2.40 8.13 -2.39 -0.02 2.38 16 46 H 0.25 16.59 8.73 -92.72 -0.81 15.78 16 47 H 0.07 2.71 7.11 -2.39 -0.02 2.69 16 48 H 0.03 1.55 6.53 -2.38 -0.02 1.54 16 49 H 0.08 1.23 6.16 -2.39 -0.01 1.22 16 50 H 0.05 0.73 6.36 -2.39 -0.02 0.71 16 51 H 0.06 0.70 8.14 -2.38 -0.02 0.68 16 52 H 0.07 0.76 6.27 -2.39 -0.01 0.75 16 53 H 0.05 1.24 6.69 -2.39 -0.02 1.23 16 54 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 55 H 0.04 0.95 5.67 -2.39 -0.01 0.93 16 Total: -1.00 -80.91 407.98 1.21 -79.70 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -0.06 Total: 22.47 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: 6.10 Total: -8.43 kcal Atomic # 7 Polarization: -114.61 SS G_CDS: -4.94 Total: -119.55 kcal Atomic # 8 Polarization: -30.04 SS G_CDS: -1.65 Total: -31.69 kcal Atomic # 14 Polarization: 55.75 SS G_CDS: 1.76 Total: 57.51 kcal Total: -80.91 1.21 -79.70 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724876085.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.261 kcal (2) G-P(sol) polarization free energy of solvation -80.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds