Wall clock time and date at job start Tue Mar 31 2020 23:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52999 * 109.46894 * 2 1 4 4 H 1.08997 * 109.47075 * 52.86105 * 3 2 1 5 5 C 1.53004 * 109.47050 * 172.85770 * 3 2 1 6 6 C 1.50698 * 109.47154 * 197.51625 * 5 3 2 7 7 O 1.21279 * 119.99858 * 8.94771 * 6 5 3 8 8 N 1.34781 * 119.99669 * 188.94558 * 6 5 3 9 9 C 1.46501 * 119.99733 * 180.02562 * 8 6 5 10 10 C 1.53002 * 109.47271 * 180.02562 * 9 8 6 11 11 H 1.08997 * 110.28490 * 57.86947 * 10 9 8 12 12 C 1.54555 * 110.32334 * 179.97438 * 10 9 8 13 13 C 1.54767 * 104.07659 * 142.48914 * 12 10 9 14 14 C 1.53353 * 103.67302 * 359.13477 * 13 12 10 15 15 C 1.52311 * 116.12594 * 108.91582 * 14 13 12 16 16 N 1.47283 * 87.68951 * 91.18092 * 15 14 13 17 17 C 1.36934 * 135.92679 * 206.13019 * 16 15 14 18 18 H 1.08001 * 120.00207 * 356.87465 * 17 16 15 19 19 C 1.38809 * 120.00111 * 176.88101 * 17 16 15 20 20 N 1.31613 * 120.00367 * 176.98943 * 19 17 16 21 21 Si 1.86809 * 119.99692 * 356.98643 * 19 17 16 22 22 H 1.48499 * 109.46836 * 176.47611 * 21 19 17 23 23 H 1.48494 * 109.46851 * 296.47209 * 21 19 17 24 24 H 1.48501 * 109.47135 * 56.47366 * 21 19 17 25 25 C 1.47286 * 88.14376 * 26.37690 * 16 15 14 26 26 O 1.43099 * 106.44653 * 337.45031 * 14 13 12 27 27 C 1.53002 * 109.47006 * 292.85429 * 3 2 1 28 28 C 1.52998 * 109.46796 * 173.77923 * 27 3 2 29 29 C 1.52998 * 109.47460 * 293.77772 * 27 3 2 30 30 H 1.08997 * 109.47051 * 66.23918 * 1 2 3 31 31 H 1.09007 * 109.47042 * 186.23290 * 1 2 3 32 32 H 1.08998 * 109.47518 * 306.23113 * 1 2 3 33 33 H 1.09003 * 109.47146 * 239.99863 * 2 1 3 34 34 H 1.09000 * 109.47143 * 120.00131 * 2 1 3 35 35 H 1.09000 * 109.47151 * 77.51276 * 5 3 2 36 36 H 1.08998 * 109.47271 * 317.51947 * 5 3 2 37 37 H 0.97002 * 120.00094 * 359.97438 * 8 6 5 38 38 H 1.09003 * 109.47275 * 59.99518 * 9 8 6 39 39 H 1.09001 * 109.47034 * 299.99833 * 9 8 6 40 40 H 1.09001 * 110.50862 * 23.83767 * 12 10 9 41 41 H 1.08995 * 110.62107 * 261.18973 * 12 10 9 42 42 H 1.08995 * 110.58211 * 240.59066 * 13 12 10 43 43 H 1.08999 * 110.71499 * 117.74527 * 13 12 10 44 44 H 1.09000 * 113.51714 * 336.47256 * 15 14 13 45 45 H 1.09005 * 113.57579 * 205.89766 * 15 14 13 46 46 H 0.97005 * 120.00018 * 354.91607 * 20 19 17 47 47 H 1.09002 * 113.51251 * 88.32453 * 25 16 15 48 48 H 1.08997 * 113.51960 * 218.91174 * 25 16 15 49 49 H 1.08995 * 109.46723 * 53.78128 * 27 3 2 50 50 H 1.08999 * 109.47372 * 67.94630 * 28 27 3 51 51 H 1.09003 * 109.46965 * 187.94563 * 28 27 3 52 52 H 1.08999 * 109.47422 * 307.94219 * 28 27 3 53 53 H 1.09005 * 109.46649 * 61.16320 * 29 27 3 54 54 H 1.09002 * 109.46948 * 181.16128 * 29 27 3 55 55 H 1.09000 * 109.47461 * 301.16874 * 29 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5760 1.9918 0.8192 5 6 3.5594 1.4463 0.1794 6 6 4.0114 2.8190 0.6064 7 8 3.1920 3.6601 0.9098 8 7 5.3263 3.1118 0.6512 9 6 5.7657 4.4461 1.0669 10 6 7.2938 4.5144 1.0300 11 1 7.6584 4.2814 0.0296 12 6 7.7792 5.9157 1.4650 13 6 9.0606 5.6324 2.2853 14 6 9.1753 4.1034 2.2619 15 6 10.3025 3.5282 1.4142 16 7 11.1500 3.5723 2.6180 17 6 12.4919 3.6680 2.8734 18 1 13.1976 3.6821 2.0560 19 6 12.9453 3.7467 4.1830 20 7 14.2373 3.7789 4.4314 21 14 11.7213 3.8070 5.5930 22 1 12.4538 3.8025 6.8848 23 1 10.9078 5.0450 5.4896 24 1 10.8295 2.6215 5.5255 25 6 9.9240 3.4621 3.4268 26 8 7.8608 3.6024 1.9994 27 6 1.6817 2.1101 -1.3293 28 6 2.0521 3.5934 -1.2711 29 6 2.4553 1.4353 -2.4637 30 1 -0.3633 0.4141 -0.9405 31 1 -0.3633 -1.0217 0.1116 32 1 -0.3634 0.6074 0.8289 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 4.0373 1.1836 -0.7644 36 1 3.8371 0.7187 0.9420 37 1 5.9816 2.4389 0.4089 38 1 5.4171 4.6441 2.0805 39 1 5.3526 5.1925 0.3883 40 1 7.0283 6.4042 2.0861 41 1 8.0110 6.5291 0.5943 42 1 8.9485 5.9926 3.3079 43 1 9.9300 6.0892 1.8124 44 1 10.6366 4.1985 0.6223 45 1 10.1069 2.5172 1.0567 46 1 14.8733 3.6734 3.7066 47 1 9.6235 2.4329 3.6230 48 1 9.9400 4.0768 4.3268 49 1 0.6114 2.0096 -1.5094 50 1 3.1366 3.6958 -1.2326 51 1 1.6708 4.0982 -2.1588 52 1 1.6128 4.0430 -0.3806 53 1 2.1759 0.3831 -2.5184 54 1 2.2157 1.9244 -3.4080 55 1 3.5254 1.5176 -2.2731 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724876093.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:35:59 Heat of formation + Delta-G solvation = -57.291997 kcal Electronic energy + Delta-G solvation = -30600.624275 eV Core-core repulsion = 26638.322222 eV Total energy + Delta-G solvation = -3962.302053 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.74893 -41.13266 -38.73891 -38.08111 -35.59744 -34.48653 -33.27311 -33.16777 -31.65212 -30.41790 -28.71252 -27.99673 -27.31124 -26.03791 -24.57344 -23.28902 -23.11286 -22.28894 -21.33913 -20.75527 -19.55140 -19.48605 -18.04917 -17.68687 -17.45462 -17.30231 -16.90742 -16.50139 -16.19961 -15.71406 -15.47286 -15.39179 -15.15748 -14.88158 -14.66856 -14.40550 -14.25420 -14.00034 -13.77928 -13.59482 -13.39808 -13.30107 -13.12798 -12.90293 -12.83916 -12.70061 -12.52025 -12.43618 -12.28794 -12.21874 -12.10110 -12.07360 -11.82975 -11.63313 -11.33191 -11.28060 -11.21615 -11.18352 -11.12004 -11.00075 -10.61455 -10.47375 -9.95944 -9.27746 -8.66856 -5.52011 1.36199 1.44892 1.64694 1.77300 2.25947 2.49654 2.60627 2.96720 3.19305 3.39155 3.58219 3.67636 3.78377 3.85472 3.88787 3.96434 4.11230 4.15765 4.34060 4.38697 4.40677 4.42936 4.46206 4.52395 4.55387 4.57615 4.59652 4.68142 4.69155 4.77113 4.82659 4.83037 4.85571 4.90648 4.95310 4.97731 4.98775 5.07550 5.09067 5.12400 5.16669 5.20324 5.21831 5.25490 5.39347 5.39884 5.47153 5.49237 5.63378 5.73362 5.90192 5.95547 6.63662 6.64862 7.26938 7.36784 8.19088 8.87439 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.021657 B = 0.002160 C = 0.002100 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1292.547345 B =12957.382218 C =13332.876042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.068 4.068 4 H 0.060 0.940 5 C -0.143 4.143 6 C 0.508 3.492 7 O -0.570 6.570 8 N -0.724 5.724 9 C 0.135 3.865 10 C 0.064 3.936 11 H 0.092 0.908 12 C -0.135 4.135 13 C -0.120 4.120 14 C 0.084 3.916 15 C 0.110 3.890 16 N -0.649 5.649 17 C -0.286 4.286 18 H 0.056 0.944 19 C -0.081 4.081 20 N -0.969 5.969 21 Si 1.105 2.895 22 H -0.303 1.303 23 H -0.269 1.269 24 H -0.268 1.268 25 C 0.101 3.899 26 O -0.361 6.361 27 C -0.089 4.089 28 C -0.135 4.135 29 C -0.151 4.151 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.116 0.884 36 H 0.105 0.895 37 H 0.412 0.588 38 H 0.059 0.941 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.103 0.897 42 H 0.073 0.927 43 H 0.077 0.923 44 H 0.059 0.941 45 H 0.054 0.946 46 H 0.248 0.752 47 H 0.053 0.947 48 H 0.052 0.948 49 H 0.072 0.928 50 H 0.041 0.959 51 H 0.040 0.960 52 H 0.049 0.951 53 H 0.068 0.932 54 H 0.053 0.947 55 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.837 -3.670 -14.362 32.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.087 4.087 4 H 0.079 0.921 5 C -0.182 4.182 6 C 0.297 3.703 7 O -0.449 6.449 8 N -0.376 5.376 9 C 0.011 3.989 10 C 0.006 3.994 11 H 0.110 0.890 12 C -0.173 4.173 13 C -0.158 4.158 14 C 0.043 3.957 15 C -0.015 4.015 16 N -0.379 5.379 17 C -0.413 4.413 18 H 0.074 0.926 19 C -0.273 4.273 20 N -0.614 5.614 21 Si 0.932 3.068 22 H -0.231 1.231 23 H -0.196 1.196 24 H -0.194 1.194 25 C -0.024 4.024 26 O -0.279 6.279 27 C -0.107 4.107 28 C -0.192 4.192 29 C -0.208 4.208 30 H 0.076 0.924 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.096 0.904 34 H 0.083 0.917 35 H 0.134 0.866 36 H 0.123 0.877 37 H 0.248 0.752 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.121 0.879 42 H 0.091 0.909 43 H 0.095 0.905 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.057 0.943 47 H 0.070 0.930 48 H 0.070 0.930 49 H 0.091 0.909 50 H 0.061 0.939 51 H 0.059 0.941 52 H 0.068 0.932 53 H 0.087 0.913 54 H 0.072 0.928 55 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -29.414 -3.078 -12.410 32.072 hybrid contribution 1.480 -0.359 -1.629 2.230 sum -27.934 -3.437 -14.038 31.451 Atomic orbital electron populations 1.21799 0.95746 1.01758 1.01712 1.21630 0.96151 0.95091 1.02765 1.21019 0.93160 0.96667 0.97879 0.92141 1.21985 0.98077 0.93255 1.04867 1.21075 0.81734 0.90850 0.76667 1.90691 1.53116 1.51094 1.50038 1.45986 1.07624 1.15140 1.68865 1.21352 0.91369 0.85387 1.00808 1.23407 0.92781 0.89592 0.93587 0.88996 1.22941 0.96366 0.96651 1.01351 1.22369 0.99215 0.92334 1.01851 1.23092 0.82353 0.94201 0.96044 1.22851 0.88436 0.99091 0.91132 1.45822 1.00512 1.86939 1.04628 1.19991 0.80261 1.47085 0.93973 0.92625 1.26930 1.00279 0.99558 1.00541 1.71012 1.01061 1.55018 1.34296 0.83306 0.72406 0.78065 0.72980 1.23113 1.19560 1.19379 1.22855 0.85233 0.98996 0.95314 1.88929 1.26841 1.50516 1.61595 1.21126 1.00421 0.94461 0.94712 1.22008 1.00661 0.96307 1.00223 1.21999 1.00286 1.01035 0.97506 0.92398 0.92119 0.93568 0.90433 0.91749 0.86625 0.87661 0.75232 0.92263 0.89243 0.89152 0.87851 0.90861 0.90462 0.92316 0.92832 0.94294 0.92972 0.93016 0.90930 0.93948 0.94057 0.93238 0.91289 0.92801 0.92192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 9.57 71.98 0.69 -0.95 16 2 C -0.12 -1.27 5.28 30.59 0.16 -1.11 16 3 C -0.07 -0.97 1.64 -10.79 -0.02 -0.99 16 4 H 0.06 1.19 7.27 -2.39 -0.02 1.17 16 5 C -0.14 -1.89 5.04 29.85 0.15 -1.74 16 6 C 0.51 9.85 5.90 87.66 0.52 10.37 16 7 O -0.57 -14.86 12.08 -3.02 -0.04 -14.89 16 8 N -0.72 -12.67 5.52 -463.05 -2.55 -15.22 16 9 C 0.13 2.53 5.28 86.38 0.46 2.98 16 10 C 0.06 1.26 3.35 31.12 0.10 1.37 16 11 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 12 C -0.14 -2.60 6.65 31.73 0.21 -2.39 16 13 C -0.12 -3.39 6.50 31.32 0.20 -3.18 16 14 C 0.08 2.76 1.39 -11.03 -0.02 2.74 16 15 C 0.11 4.10 8.18 83.49 0.68 4.78 16 16 N -0.65 -31.19 3.67 -740.25 -2.72 -33.91 16 17 C -0.29 -16.54 11.09 84.03 0.93 -15.61 16 18 H 0.06 3.45 8.05 -2.91 -0.02 3.42 16 19 C -0.08 -4.85 5.50 84.86 0.47 -4.39 16 20 N -0.97 -62.54 13.70 21.65 0.30 -62.24 16 21 Si 1.11 54.12 25.02 68.60 1.72 55.83 16 22 H -0.30 -15.16 7.11 99.48 0.71 -14.45 16 23 H -0.27 -12.01 6.60 99.48 0.66 -11.36 16 24 H -0.27 -12.09 6.43 99.48 0.64 -11.45 16 25 C 0.10 4.19 5.47 83.58 0.46 4.64 16 26 O -0.36 -10.00 11.12 -148.98 -1.66 -11.66 16 27 C -0.09 -1.24 2.60 -10.79 -0.03 -1.27 16 28 C -0.13 -2.49 7.47 71.98 0.54 -1.95 16 29 C -0.15 -1.60 8.53 71.98 0.61 -0.98 16 30 H 0.06 0.59 6.80 -2.39 -0.02 0.57 16 31 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 32 H 0.05 0.57 8.13 -2.39 -0.02 0.55 16 33 H 0.08 0.66 6.34 -2.39 -0.02 0.64 16 34 H 0.06 0.67 8.00 -2.39 -0.02 0.65 16 35 H 0.12 1.10 5.42 -2.39 -0.01 1.08 16 36 H 0.11 1.19 7.92 -2.39 -0.02 1.17 16 37 H 0.41 5.94 8.47 -92.71 -0.79 5.15 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.09 1.55 7.87 -2.39 -0.02 1.53 16 41 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.07 2.14 8.11 -2.39 -0.02 2.13 16 43 H 0.08 2.33 7.92 -2.39 -0.02 2.31 16 44 H 0.06 2.04 8.07 -2.39 -0.02 2.02 16 45 H 0.05 1.91 8.14 -2.38 -0.02 1.89 16 46 H 0.25 16.01 8.73 -92.70 -0.81 15.20 16 47 H 0.05 2.17 8.04 -2.39 -0.02 2.15 16 48 H 0.05 2.20 4.06 -2.39 -0.01 2.19 16 49 H 0.07 0.99 6.52 -2.39 -0.02 0.97 16 50 H 0.04 0.83 5.74 -2.39 -0.01 0.82 16 51 H 0.04 0.69 8.14 -2.39 -0.02 0.67 16 52 H 0.05 1.15 6.68 -2.39 -0.02 1.13 16 53 H 0.07 0.57 6.52 -2.38 -0.02 0.56 16 54 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 55 H 0.06 0.60 5.91 -2.39 -0.01 0.59 16 Total: -1.00 -72.59 406.38 1.10 -71.49 By element: Atomic # 1 Polarization: 18.34 SS G_CDS: -0.07 Total: 18.27 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 6.12 Total: -7.66 kcal Atomic # 7 Polarization: -106.40 SS G_CDS: -4.98 Total: -111.38 kcal Atomic # 8 Polarization: -24.86 SS G_CDS: -1.69 Total: -26.55 kcal Atomic # 14 Polarization: 54.12 SS G_CDS: 1.72 Total: 55.83 kcal Total: -72.59 1.10 -71.49 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724876093.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.201 kcal (2) G-P(sol) polarization free energy of solvation -72.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.292 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds