Wall clock time and date at job start Tue Mar 31 2020 22:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53010 * 109.47151 * 2 1 4 4 H 1.09000 * 109.81940 * 305.88708 * 3 2 1 5 5 C 1.54379 * 109.83038 * 184.99925 * 3 2 1 6 6 C 1.55308 * 102.24984 * 219.03582 * 5 3 2 7 7 C 1.54944 * 100.94347 * 34.13548 * 6 5 3 8 8 H 1.09003 * 110.30912 * 82.56534 * 7 6 5 9 9 C 1.50698 * 110.31376 * 204.64068 * 7 6 5 10 10 O 1.21282 * 120.00302 * 110.45669 * 9 7 6 11 11 N 1.34775 * 119.99799 * 290.46077 * 9 7 6 12 12 C 1.46925 * 120.63371 * 183.99923 * 11 9 7 13 13 C 1.53188 * 108.77543 * 233.62996 * 12 11 9 14 14 C 1.53036 * 109.31572 * 305.36358 * 13 12 11 15 15 C 1.53003 * 109.46456 * 181.38798 * 14 13 12 16 16 N 1.46493 * 109.47280 * 174.97228 * 15 14 13 17 17 C 1.36931 * 120.00148 * 89.99828 * 16 15 14 18 18 H 1.07998 * 120.00174 * 29.03989 * 17 16 15 19 19 C 1.38814 * 120.00192 * 209.03762 * 17 16 15 20 20 N 1.31615 * 119.99937 * 38.65635 * 19 17 16 21 21 Si 1.86801 * 120.00103 * 218.65938 * 19 17 16 22 22 H 1.48502 * 109.47321 * 179.97438 * 21 19 17 23 23 H 1.48508 * 109.47032 * 59.99794 * 21 19 17 24 24 H 1.48500 * 109.47366 * 299.99920 * 21 19 17 25 25 C 1.46501 * 120.00052 * 269.99952 * 16 15 14 26 26 C 1.53005 * 109.46862 * 265.25554 * 25 16 15 27 27 C 1.53039 * 109.52921 * 61.36887 * 14 13 12 28 28 C 1.46934 * 120.63154 * 4.02049 * 11 9 7 29 29 O 1.43373 * 109.82295 * 66.83925 * 3 2 1 30 30 H 1.08999 * 109.46566 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47165 * 300.00017 * 1 2 3 32 32 H 1.09000 * 109.47013 * 60.00170 * 1 2 3 33 33 H 1.08994 * 109.47714 * 239.99899 * 2 1 3 34 34 H 1.09008 * 109.47332 * 119.99813 * 2 1 3 35 35 H 1.09000 * 110.84553 * 100.84960 * 5 3 2 36 36 H 1.08999 * 111.02499 * 337.30357 * 5 3 2 37 37 H 1.08998 * 111.12507 * 276.21751 * 6 5 3 38 38 H 1.09000 * 111.16097 * 152.06936 * 6 5 3 39 39 H 1.08993 * 109.58926 * 113.83918 * 12 11 9 40 40 H 1.09000 * 109.58013 * 353.41189 * 12 11 9 41 41 H 1.08997 * 109.49951 * 185.40614 * 13 12 11 42 42 H 1.09004 * 109.49885 * 65.31684 * 13 12 11 43 43 H 1.09004 * 109.46056 * 301.35684 * 14 13 12 44 44 H 1.08995 * 109.46830 * 54.96707 * 15 14 13 45 45 H 1.09001 * 109.46355 * 294.97407 * 15 14 13 46 46 H 0.96995 * 120.00337 * 5.84447 * 20 19 17 47 47 H 1.08997 * 109.47078 * 25.25175 * 25 16 15 48 48 H 1.09002 * 109.47345 * 145.25340 * 25 16 15 49 49 H 1.08997 * 109.46965 * 299.99691 * 26 25 16 50 50 H 1.08997 * 109.46949 * 60.00085 * 26 25 16 51 51 H 1.09007 * 109.46759 * 179.97438 * 26 25 16 52 52 H 1.09007 * 109.49279 * 58.58513 * 27 14 13 53 53 H 1.08997 * 109.49944 * 178.67729 * 27 14 13 54 54 H 1.08995 * 109.58915 * 246.16025 * 28 11 9 55 55 H 1.09004 * 109.58189 * 6.43852 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5965 1.9914 -0.8308 5 6 3.5786 1.4541 -0.1266 6 6 3.9796 2.6072 0.8335 7 6 2.8991 2.4622 1.9346 8 1 3.1871 1.6900 2.6480 9 6 2.6940 3.7767 2.6425 10 8 1.6605 4.3927 2.4902 11 7 3.6592 4.2678 3.4449 12 6 3.4402 5.5029 4.2098 13 6 4.5803 6.4799 3.9056 14 6 5.9207 5.7965 4.1855 15 6 7.0608 6.7806 3.9159 16 7 8.3355 6.1677 4.2974 17 6 9.0492 5.4442 3.3797 18 1 8.9743 5.6814 2.3288 19 6 9.8690 4.4060 3.8002 20 7 9.4818 3.6172 4.7801 21 14 11.5219 4.1283 2.9754 22 1 12.1998 2.9661 3.6038 23 1 12.3656 5.3397 3.1371 24 1 11.3148 3.8589 1.5298 25 6 8.8467 6.3288 5.6609 26 6 9.8144 7.5131 5.7061 27 6 6.0735 4.5770 3.2737 28 6 4.9506 3.5783 3.5710 29 8 1.7019 2.0778 1.2401 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 3.8820 1.6777 -1.1493 36 1 4.0053 0.5074 0.2047 37 1 3.9071 3.5748 0.3371 38 1 4.9786 2.4509 1.2404 39 1 3.4286 5.2755 5.2757 40 1 2.4893 5.9491 3.9188 41 1 4.4823 7.3618 4.5386 42 1 4.5351 6.7768 2.8578 43 1 5.9552 5.4776 5.2273 44 1 6.9041 7.6872 4.5003 45 1 7.0811 7.0312 2.8552 46 1 8.5903 3.7069 5.1514 47 1 8.0152 6.5129 6.3412 48 1 9.3690 5.4210 5.9627 49 1 10.6458 7.3291 5.0257 50 1 9.2919 8.4209 5.4043 51 1 10.1943 7.6333 6.7207 52 1 6.0142 4.8920 2.2319 53 1 7.0384 4.1043 3.4569 54 1 5.0621 3.1938 4.5847 55 1 4.9950 2.7530 2.8603 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725025909.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:58 Heat of formation + Delta-G solvation = -88.690528 kcal Electronic energy + Delta-G solvation = -31621.800864 eV Core-core repulsion = 27658.137269 eV Total energy + Delta-G solvation = -3963.663595 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.78847 -40.19092 -38.96097 -37.49357 -34.86496 -34.43739 -33.36673 -33.07947 -32.07031 -30.91578 -29.73793 -27.93363 -25.90257 -25.20785 -24.24417 -23.90786 -22.84033 -22.35406 -21.73413 -21.13506 -19.96444 -19.10289 -18.84596 -17.53971 -17.11844 -16.76617 -16.32377 -16.12646 -16.01036 -15.50023 -15.40938 -15.21265 -15.05716 -14.92267 -14.62816 -14.54600 -14.21020 -13.99675 -13.91872 -13.83377 -13.71991 -13.34942 -13.01435 -12.85639 -12.74278 -12.64540 -12.54556 -12.44284 -12.26334 -12.17919 -11.96489 -11.89394 -11.84373 -11.81943 -11.75757 -11.62220 -11.38602 -11.31333 -11.23925 -10.99999 -10.41535 -10.16423 -9.73853 -8.74058 -8.11586 -5.17989 1.41777 1.63033 1.68656 1.72537 1.86802 2.72155 2.80900 3.22418 3.25981 3.45601 3.59093 3.68386 3.81696 3.91383 3.93426 4.03988 4.11225 4.16321 4.17063 4.26013 4.31930 4.40268 4.43293 4.44618 4.50664 4.53751 4.67864 4.75106 4.76088 4.79319 4.83829 4.85217 4.88501 4.91441 4.94195 5.01924 5.04817 5.05558 5.07774 5.09576 5.11259 5.23676 5.29193 5.38195 5.40864 5.41463 5.56677 5.63071 5.70670 5.92704 6.08087 6.29894 6.54887 7.03114 7.21541 7.93972 8.39862 9.07549 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014070 B = 0.003078 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1989.569712 B = 9093.738266 C =10612.618075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C 0.068 3.932 4 H 0.078 0.922 5 C -0.140 4.140 6 C -0.146 4.146 7 C 0.066 3.934 8 H 0.111 0.889 9 C 0.511 3.489 10 O -0.575 6.575 11 N -0.600 5.600 12 C 0.114 3.886 13 C -0.115 4.115 14 C -0.093 4.093 15 C 0.154 3.846 16 N -0.602 5.602 17 C -0.344 4.344 18 H 0.034 0.966 19 C -0.049 4.049 20 N -0.908 5.908 21 Si 1.078 2.922 22 H -0.295 1.295 23 H -0.293 1.293 24 H -0.281 1.281 25 C 0.133 3.867 26 C -0.149 4.149 27 C -0.108 4.108 28 C 0.106 3.894 29 O -0.375 6.375 30 H 0.065 0.935 31 H 0.038 0.962 32 H 0.055 0.945 33 H 0.095 0.905 34 H 0.067 0.933 35 H 0.102 0.898 36 H 0.100 0.900 37 H 0.070 0.930 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.052 0.948 44 H 0.049 0.951 45 H 0.032 0.968 46 H 0.261 0.739 47 H 0.042 0.958 48 H 0.043 0.957 49 H 0.030 0.970 50 H 0.047 0.953 51 H 0.057 0.943 52 H 0.045 0.955 53 H 0.075 0.925 54 H 0.071 0.929 55 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.581 -4.390 -5.935 13.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C 0.011 3.989 4 H 0.096 0.904 5 C -0.177 4.177 6 C -0.184 4.184 7 C 0.005 3.995 8 H 0.128 0.872 9 C 0.299 3.701 10 O -0.455 6.455 11 N -0.334 5.334 12 C -0.009 4.009 13 C -0.154 4.154 14 C -0.114 4.114 15 C 0.028 3.972 16 N -0.324 5.324 17 C -0.474 4.474 18 H 0.051 0.949 19 C -0.250 4.250 20 N -0.548 5.548 21 Si 0.906 3.094 22 H -0.222 1.222 23 H -0.220 1.220 24 H -0.207 1.207 25 C 0.007 3.993 26 C -0.208 4.208 27 C -0.146 4.146 28 C -0.016 4.016 29 O -0.295 6.295 30 H 0.084 0.916 31 H 0.058 0.942 32 H 0.074 0.926 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.121 0.879 36 H 0.118 0.882 37 H 0.089 0.911 38 H 0.125 0.875 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.050 0.950 46 H 0.070 0.930 47 H 0.060 0.940 48 H 0.061 0.939 49 H 0.050 0.950 50 H 0.066 0.934 51 H 0.076 0.924 52 H 0.064 0.936 53 H 0.094 0.906 54 H 0.089 0.911 55 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -10.953 -4.943 -5.917 13.394 hybrid contribution -1.081 1.113 0.005 1.551 sum -12.033 -3.831 -5.911 13.944 Atomic orbital electron populations 1.21710 0.95733 1.01887 1.01410 1.21906 0.96635 0.94501 1.03510 1.23116 0.95577 0.94316 0.85882 0.90377 1.23204 0.93812 0.99159 1.01524 1.23361 0.98887 1.00611 0.95509 1.22864 0.86998 0.93439 0.96186 0.87185 1.20966 0.82837 0.87506 0.78776 1.90644 1.29070 1.61643 1.64132 1.48165 1.14820 1.26156 1.44221 1.21635 0.99258 0.84344 0.95614 1.21849 0.93516 0.98241 1.01806 1.21592 0.94604 0.96635 0.98574 1.20978 0.84749 0.93849 0.97632 1.44125 1.19474 1.59481 1.09294 1.19579 1.25647 1.12478 0.89675 0.94867 1.26285 1.06201 0.91807 1.00716 1.70889 1.21122 1.32474 1.30276 0.83340 0.75237 0.75371 0.75460 1.22167 1.22037 1.20687 1.20830 0.95422 0.97256 0.85786 1.22064 0.99743 0.98989 1.00025 1.21691 0.98188 0.96247 0.98516 1.22065 0.81145 0.95538 1.02842 1.88548 1.28307 1.78349 1.34249 0.91554 0.94228 0.92623 0.88634 0.91443 0.87909 0.88168 0.91115 0.87521 0.90455 0.90181 0.89376 0.92682 0.92968 0.93272 0.94965 0.92952 0.93994 0.93935 0.95045 0.93429 0.92421 0.93630 0.90647 0.91115 0.88133 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.53 9.83 71.98 0.71 -1.82 16 2 C -0.13 -1.99 5.51 30.60 0.17 -1.82 16 3 C 0.07 1.34 3.51 31.07 0.11 1.45 16 4 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 5 C -0.14 -2.21 6.54 31.86 0.21 -2.01 16 6 C -0.15 -3.06 5.83 32.05 0.19 -2.88 16 7 C 0.07 1.67 2.91 30.51 0.09 1.76 16 8 H 0.11 2.40 7.77 -2.39 -0.02 2.38 16 9 C 0.51 16.12 7.09 87.66 0.62 16.74 16 10 O -0.58 -22.68 15.97 15.40 0.25 -22.44 16 11 N -0.60 -17.22 2.97 -818.91 -2.43 -19.65 16 12 C 0.11 3.11 6.44 86.36 0.56 3.67 16 13 C -0.12 -3.14 5.36 30.67 0.16 -2.98 16 14 C -0.09 -3.03 2.36 -10.77 -0.03 -3.05 16 15 C 0.15 5.72 5.15 86.38 0.44 6.16 16 16 N -0.60 -26.64 2.23 -702.02 -1.56 -28.20 16 17 C -0.34 -17.18 7.19 84.03 0.60 -16.57 16 18 H 0.03 1.76 8.05 -2.91 -0.02 1.74 16 19 C -0.05 -2.51 4.59 84.86 0.39 -2.12 16 20 N -0.91 -48.96 12.15 21.65 0.26 -48.69 16 21 Si 1.08 47.78 30.05 68.60 2.06 49.84 16 22 H -0.30 -13.41 7.11 99.48 0.71 -12.71 16 23 H -0.29 -12.80 7.11 99.48 0.71 -12.10 16 24 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 25 C 0.13 5.66 5.84 86.38 0.50 6.16 16 26 C -0.15 -5.63 10.21 71.98 0.74 -4.90 16 27 C -0.11 -3.65 4.96 30.67 0.15 -3.50 16 28 C 0.11 2.92 6.04 86.36 0.52 3.44 16 29 O -0.38 -10.47 9.92 -130.54 -1.29 -11.76 16 30 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.04 0.84 7.89 -2.39 -0.02 0.82 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 35 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 36 H 0.10 1.28 7.86 -2.39 -0.02 1.26 16 37 H 0.07 1.68 8.05 -2.39 -0.02 1.66 16 38 H 0.11 2.09 6.21 -2.39 -0.01 2.07 16 39 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.08 2.34 7.00 -2.39 -0.02 2.33 16 41 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 43 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.05 1.67 8.07 -2.39 -0.02 1.65 16 45 H 0.03 1.26 8.04 -2.39 -0.02 1.24 16 46 H 0.26 14.10 7.63 -92.71 -0.71 13.39 16 47 H 0.04 1.62 8.04 -2.39 -0.02 1.60 16 48 H 0.04 2.09 5.51 -2.39 -0.01 2.08 16 49 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 50 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 51 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 52 H 0.04 1.58 8.14 -2.38 -0.02 1.56 16 53 H 0.08 3.18 6.00 -2.39 -0.01 3.17 16 54 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 55 H 0.10 2.38 3.89 -2.38 -0.01 2.37 16 Total: -1.00 -63.32 416.09 4.31 -59.01 By element: Atomic # 1 Polarization: 23.27 SS G_CDS: 0.90 Total: 24.17 kcal Atomic # 6 Polarization: -8.41 SS G_CDS: 6.14 Total: -2.27 kcal Atomic # 7 Polarization: -92.81 SS G_CDS: -3.73 Total: -96.55 kcal Atomic # 8 Polarization: -33.15 SS G_CDS: -1.05 Total: -34.20 kcal Atomic # 14 Polarization: 47.78 SS G_CDS: 2.06 Total: 49.84 kcal Total: -63.32 4.31 -59.01 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725025909.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.682 kcal (2) G-P(sol) polarization free energy of solvation -63.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds