Wall clock time and date at job start Tue Mar 31 2020 22:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47215 * 2 1 4 4 C 1.52998 * 109.47139 * 120.00333 * 2 1 3 5 5 H 1.08997 * 109.48161 * 300.01777 * 4 2 1 6 6 C 1.53097 * 109.47989 * 180.02562 * 4 2 1 7 7 C 1.53174 * 109.16185 * 182.40944 * 6 4 2 8 8 H 1.08995 * 109.54500 * 297.10556 * 7 6 4 9 9 C 1.53002 * 109.54138 * 176.84320 * 7 6 4 10 10 C 1.50705 * 109.47242 * 175.44229 * 9 7 6 11 11 O 1.21284 * 119.99680 * 359.97438 * 10 9 7 12 12 N 1.34775 * 120.00024 * 180.02562 * 10 9 7 13 13 C 1.46505 * 119.99793 * 180.02562 * 12 10 9 14 14 H 1.09000 * 112.84717 * 336.19331 * 13 12 10 15 15 C 1.53783 * 113.61448 * 107.49779 * 13 12 10 16 16 C 1.53780 * 87.08006 * 89.11254 * 15 13 12 17 17 H 1.09001 * 113.61769 * 270.88123 * 16 15 13 18 18 C 1.53005 * 113.68658 * 139.98967 * 16 15 13 19 19 N 1.46502 * 109.46643 * 87.46749 * 18 16 15 20 20 C 1.36942 * 119.99531 * 179.97438 * 19 18 16 21 21 H 1.08005 * 120.00110 * 0.02562 * 20 19 18 22 22 C 1.38816 * 119.99694 * 180.02562 * 20 19 18 23 23 N 1.31609 * 120.00146 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99794 * 180.02562 * 22 20 19 25 25 H 1.48500 * 109.47227 * 59.99502 * 24 22 20 26 26 H 1.48496 * 109.47087 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.46891 * 299.99783 * 24 22 20 28 28 C 1.53776 * 87.08158 * 25.43345 * 16 15 13 29 29 C 1.53176 * 109.04061 * 56.97999 * 7 6 4 30 30 C 1.53091 * 109.21206 * 302.98570 * 29 7 6 31 31 O 1.42902 * 109.48518 * 60.05571 * 4 2 1 32 32 H 1.09007 * 109.47081 * 299.99553 * 1 2 3 33 33 H 1.08994 * 109.47548 * 60.00002 * 1 2 3 34 34 H 1.08997 * 109.47369 * 180.02562 * 1 2 3 35 35 H 1.08997 * 109.46614 * 240.00202 * 2 1 3 36 36 H 1.09003 * 109.46976 * 180.02562 * 3 2 1 37 37 H 1.08994 * 109.46862 * 300.00418 * 3 2 1 38 38 H 1.08997 * 109.46729 * 60.00227 * 3 2 1 39 39 H 1.08995 * 109.52587 * 62.49797 * 6 4 2 40 40 H 1.09004 * 109.57034 * 302.34297 * 6 4 2 41 41 H 1.08997 * 109.47731 * 295.44095 * 9 7 6 42 42 H 1.09006 * 109.46972 * 55.44376 * 9 7 6 43 43 H 0.96997 * 119.99911 * 359.97438 * 12 10 9 44 44 H 1.08997 * 113.61456 * 203.66375 * 15 13 12 45 45 H 1.09009 * 113.61235 * 334.56718 * 15 13 12 46 46 H 1.08999 * 109.47106 * 207.46351 * 18 16 15 47 47 H 1.08998 * 109.47333 * 327.47118 * 18 16 15 48 48 H 0.96993 * 120.00508 * 359.97438 * 19 18 16 49 49 H 0.96998 * 120.00093 * 180.02562 * 23 22 20 50 50 H 1.09002 * 113.61866 * 220.01907 * 28 16 15 51 51 H 1.08998 * 113.61773 * 89.11131 * 28 16 15 52 52 H 1.09002 * 109.52410 * 62.92413 * 29 7 6 53 53 H 1.09004 * 109.52533 * 183.05059 * 29 7 6 54 54 H 1.09007 * 109.48127 * 177.62276 * 30 29 7 55 55 H 1.09000 * 109.48171 * 297.66002 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6765 -0.2079 2.1393 6 6 3.5709 -0.7209 1.2497 7 6 4.0735 -1.4964 2.4712 8 1 3.7507 -0.9918 3.3817 9 6 5.6015 -1.5688 2.4383 10 6 6.1001 -2.2336 3.6956 11 8 5.3110 -2.6117 4.5355 12 7 7.4229 -2.4069 3.8871 13 6 7.9075 -3.0536 5.1091 14 1 7.2024 -2.9769 5.9368 15 6 8.4414 -4.4778 4.8822 16 6 9.8130 -3.8363 4.6139 17 1 9.9734 -3.5692 3.5694 18 6 10.9844 -4.6163 5.2143 19 7 11.4319 -5.6353 4.2616 20 6 12.4764 -6.4609 4.5824 21 1 12.9699 -6.3610 5.5379 22 6 12.9007 -7.4261 3.6795 23 7 12.2997 -7.5474 2.5150 24 14 14.3250 -8.5527 4.1174 25 1 13.9861 -9.3275 5.3380 26 1 14.5800 -9.4882 2.9927 27 1 15.5408 -7.7383 4.3698 28 6 9.3453 -2.6593 5.4860 29 6 3.4927 -2.9134 2.4372 30 6 1.9647 -2.8305 2.3916 31 8 1.5649 -2.0690 1.2487 32 1 -0.3634 0.5138 0.8901 33 1 -0.3634 0.5138 -0.8899 34 1 -0.3634 -1.0276 0.0005 35 1 1.8932 -0.5138 -0.8900 36 1 3.1300 1.4424 -0.0005 37 1 1.6766 1.9563 -0.8899 38 1 1.6767 1.9562 0.8900 39 1 3.9349 0.3055 1.2948 40 1 3.9365 -1.1973 0.3400 41 1 5.9193 -2.1474 1.5710 42 1 6.0117 -0.5610 2.3730 43 1 8.0539 -2.1041 3.2156 44 1 8.4180 -5.1005 5.7765 45 1 8.0121 -4.9713 4.0101 46 1 11.8058 -3.9320 5.4269 47 1 10.6646 -5.0983 6.1382 48 1 10.9885 -5.7253 3.4037 49 1 12.5960 -8.2221 1.8842 50 1 9.6457 -1.6845 5.1016 51 1 9.5690 -2.7848 6.5454 52 1 3.8558 -3.4348 1.5515 53 1 3.8016 -3.4553 3.3311 54 1 1.5479 -3.8355 2.3247 55 1 1.5998 -2.3450 3.2968 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725365855.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:13 Heat of formation + Delta-G solvation = -102.757235 kcal Electronic energy + Delta-G solvation = -29501.843500 eV Core-core repulsion = 25537.569926 eV Total energy + Delta-G solvation = -3964.273574 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.46586 -40.61132 -39.40605 -36.42209 -36.25259 -35.52589 -34.40273 -32.80307 -31.03589 -30.02503 -28.38941 -27.84636 -26.62680 -25.45715 -24.79359 -24.33641 -22.92926 -21.87215 -21.14782 -20.67560 -20.25402 -19.06122 -18.09854 -17.36636 -17.07871 -16.96370 -16.68224 -16.41329 -15.92157 -15.73316 -15.49927 -15.37409 -15.09259 -15.00600 -14.78212 -14.48015 -14.30539 -14.04284 -13.80762 -13.53426 -13.36882 -13.26614 -13.11701 -12.99828 -12.91635 -12.76006 -12.65084 -12.42211 -12.23455 -12.11203 -12.02534 -11.92321 -11.81357 -11.74268 -11.66647 -11.36391 -11.33485 -11.13494 -11.08958 -10.85598 -10.75033 -10.30488 -9.97626 -8.98343 -7.95442 -5.23766 1.46550 1.49703 1.55845 1.66428 2.20329 2.55879 2.82799 3.37370 3.58438 3.60195 3.62393 3.68273 3.79887 3.93981 3.95764 3.97489 4.05074 4.16630 4.24242 4.33505 4.34083 4.36857 4.47995 4.51982 4.57142 4.63130 4.73847 4.76333 4.82032 4.83362 4.84420 4.84597 4.88102 4.92541 4.95617 4.98978 4.99169 5.04587 5.11345 5.15545 5.17627 5.23659 5.28085 5.30886 5.38448 5.41269 5.48353 5.49023 5.49763 5.71372 6.27196 6.34964 6.60396 7.30620 7.33220 8.11272 8.33740 9.27884 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.020267 B = 0.001698 C = 0.001651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1381.229484 B =16483.028202 C =16953.683834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.145 4.145 4 C 0.091 3.909 5 H 0.054 0.946 6 C -0.140 4.140 7 C -0.069 4.069 8 H 0.067 0.933 9 C -0.130 4.130 10 C 0.511 3.489 11 O -0.578 6.578 12 N -0.704 5.704 13 C 0.127 3.873 14 H 0.092 0.908 15 C -0.144 4.144 16 C -0.110 4.110 17 H 0.086 0.914 18 C 0.159 3.841 19 N -0.745 5.745 20 C -0.249 4.249 21 H 0.074 0.926 22 C -0.076 4.076 23 N -0.969 5.969 24 Si 0.974 3.026 25 H -0.279 1.279 26 H -0.295 1.295 27 H -0.276 1.276 28 C -0.117 4.117 29 C -0.154 4.154 30 C 0.065 3.935 31 O -0.396 6.396 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.047 0.953 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.066 0.934 38 H 0.058 0.942 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.108 0.892 42 H 0.124 0.876 43 H 0.414 0.586 44 H 0.081 0.919 45 H 0.049 0.951 46 H 0.022 0.978 47 H 0.018 0.982 48 H 0.373 0.627 49 H 0.251 0.749 50 H 0.092 0.908 51 H 0.103 0.897 52 H 0.062 0.938 53 H 0.070 0.930 54 H 0.095 0.905 55 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.704 22.000 -3.198 31.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.106 4.106 3 C -0.202 4.202 4 C 0.034 3.966 5 H 0.072 0.928 6 C -0.177 4.177 7 C -0.088 4.088 8 H 0.085 0.915 9 C -0.169 4.169 10 C 0.299 3.701 11 O -0.458 6.458 12 N -0.356 5.356 13 C 0.021 3.979 14 H 0.110 0.890 15 C -0.182 4.182 16 C -0.129 4.129 17 H 0.105 0.895 18 C 0.033 3.967 19 N -0.387 5.387 20 C -0.381 4.381 21 H 0.092 0.908 22 C -0.268 4.268 23 N -0.620 5.620 24 Si 0.803 3.197 25 H -0.205 1.205 26 H -0.221 1.221 27 H -0.202 1.202 28 C -0.155 4.155 29 C -0.192 4.192 30 C -0.012 4.012 31 O -0.315 6.315 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.066 0.934 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.092 0.908 41 H 0.126 0.874 42 H 0.142 0.858 43 H 0.250 0.750 44 H 0.099 0.901 45 H 0.068 0.932 46 H 0.040 0.960 47 H 0.036 0.964 48 H 0.204 0.796 49 H 0.060 0.940 50 H 0.111 0.889 51 H 0.121 0.879 52 H 0.081 0.919 53 H 0.089 0.911 54 H 0.113 0.887 55 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -22.239 21.614 -2.630 31.123 hybrid contribution 1.162 -1.224 -0.157 1.695 sum -21.078 20.390 -2.787 29.458 Atomic orbital electron populations 1.21753 0.94826 1.01566 1.01888 1.21116 0.96432 0.96498 0.96567 1.21866 1.01850 0.93903 1.02630 1.22263 0.93303 0.82557 0.98504 0.92826 1.22310 0.95593 1.01897 0.97903 1.20887 0.93298 0.95813 0.98767 0.91482 1.21779 0.96536 1.03639 0.94976 1.21287 0.81827 0.78098 0.88872 1.90651 1.55739 1.52178 1.47189 1.45717 1.07487 1.60462 1.21896 1.21704 0.95817 0.92359 0.87990 0.89013 1.23412 0.96342 0.96932 1.01563 1.22669 0.93428 0.96817 0.99940 0.89545 1.20835 0.94349 0.89565 0.91973 1.42564 1.38609 1.39127 1.18413 1.19642 1.07923 1.10095 1.00424 0.90758 1.25574 1.02877 1.01768 0.96623 1.69804 1.45265 1.37938 1.09010 0.85206 0.79388 0.78468 0.76671 1.20533 1.22117 1.20217 1.23215 0.92846 0.98223 1.01232 1.22299 0.96398 0.97892 1.02564 1.22557 0.94078 0.96331 0.88214 1.87901 1.75089 1.24227 1.44298 0.92804 0.91831 0.93397 0.91012 0.91328 0.91460 0.92259 0.88510 0.90777 0.87430 0.85776 0.74984 0.90053 0.93177 0.96048 0.96395 0.79551 0.94028 0.88924 0.87874 0.91934 0.91113 0.88687 0.93385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.05 71.98 0.65 -1.16 16 2 C -0.09 -1.08 2.72 -10.80 -0.03 -1.11 16 3 C -0.15 -1.20 8.84 71.98 0.64 -0.57 16 4 C 0.09 1.36 2.23 30.63 0.07 1.43 16 5 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 6 C -0.14 -1.74 4.27 30.69 0.13 -1.61 16 7 C -0.07 -1.11 1.92 -10.68 -0.02 -1.13 16 8 H 0.07 1.25 7.97 -2.39 -0.02 1.23 16 9 C -0.13 -1.79 5.18 29.85 0.15 -1.64 16 10 C 0.51 10.95 7.57 87.66 0.66 11.61 16 11 O -0.58 -16.94 13.58 -3.04 -0.04 -16.99 16 12 N -0.70 -13.85 5.26 -440.02 -2.32 -16.16 16 13 C 0.13 2.98 4.33 45.52 0.20 3.17 16 14 H 0.09 2.34 7.46 -2.39 -0.02 2.32 16 15 C -0.14 -4.23 7.43 31.12 0.23 -4.00 16 16 C -0.11 -3.24 3.63 -10.27 -0.04 -3.27 16 17 H 0.09 2.58 8.14 -2.39 -0.02 2.56 16 18 C 0.16 6.21 6.10 86.38 0.53 6.74 16 19 N -0.74 -38.08 5.60 -343.43 -1.92 -40.01 16 20 C -0.25 -14.09 9.99 84.03 0.84 -13.25 16 21 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 22 C -0.08 -4.42 5.50 84.86 0.47 -3.95 16 23 N -0.97 -59.75 13.06 21.65 0.28 -59.46 16 24 Si 0.97 46.39 29.55 68.60 2.03 48.41 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 26 H -0.29 -14.12 7.11 99.48 0.71 -13.41 16 27 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 28 C -0.12 -2.48 7.39 31.12 0.23 -2.25 16 29 C -0.15 -3.08 5.12 30.68 0.16 -2.93 16 30 C 0.06 1.24 6.85 72.01 0.49 1.73 16 31 O -0.40 -7.88 9.74 -148.98 -1.45 -9.33 16 32 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.05 0.75 7.68 -2.39 -0.02 0.73 16 35 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 0.46 6.49 -2.39 -0.02 0.45 16 37 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 39 H 0.10 0.81 6.57 -2.39 -0.02 0.80 16 40 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 43 H 0.41 6.13 8.70 -92.71 -0.81 5.33 16 44 H 0.08 2.51 7.90 -2.39 -0.02 2.49 16 45 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 46 H 0.02 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.02 0.72 7.85 -2.39 -0.02 0.70 16 48 H 0.37 20.26 7.67 -92.71 -0.71 19.55 16 49 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 50 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 51 H 0.10 2.06 8.10 -2.39 -0.02 2.04 16 52 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 53 H 0.07 1.77 6.03 -2.38 -0.01 1.76 16 54 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 55 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -71.32 425.06 1.28 -70.04 By element: Atomic # 1 Polarization: 36.32 SS G_CDS: -0.66 Total: 35.66 kcal Atomic # 6 Polarization: -17.53 SS G_CDS: 5.36 Total: -12.17 kcal Atomic # 7 Polarization: -111.68 SS G_CDS: -3.96 Total: -115.63 kcal Atomic # 8 Polarization: -24.82 SS G_CDS: -1.49 Total: -26.31 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.41 kcal Total: -71.32 1.28 -70.04 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725365855.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.719 kcal (2) G-P(sol) polarization free energy of solvation -71.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.038 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds