Wall clock time and date at job start Tue Mar 31 2020 22:32:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46941 * 2 1 4 4 C 1.52996 * 109.47324 * 119.99717 * 2 1 3 5 5 H 1.09001 * 109.48722 * 59.97303 * 4 2 1 6 6 C 1.53096 * 109.48342 * 180.02562 * 4 2 1 7 7 C 1.53177 * 109.16164 * 177.59301 * 6 4 2 8 8 H 1.09002 * 109.54233 * 62.88942 * 7 6 4 9 9 C 1.53008 * 109.53925 * 183.05974 * 7 6 4 10 10 C 1.50706 * 109.46960 * 184.99964 * 9 7 6 11 11 O 1.21283 * 120.00081 * 0.02562 * 10 9 7 12 12 N 1.34777 * 119.99841 * 180.02562 * 10 9 7 13 13 C 1.46497 * 119.99761 * 179.97438 * 12 10 9 14 14 H 1.08995 * 112.85181 * 336.19860 * 13 12 10 15 15 C 1.53782 * 113.61315 * 107.50382 * 13 12 10 16 16 C 1.53784 * 87.08018 * 89.11736 * 15 13 12 17 17 H 1.09001 * 113.68988 * 270.87387 * 16 15 13 18 18 C 1.53002 * 113.61587 * 139.98174 * 16 15 13 19 19 N 1.46503 * 109.46960 * 87.50117 * 18 16 15 20 20 C 1.36934 * 119.99816 * 179.97438 * 19 18 16 21 21 H 1.07997 * 119.99905 * 359.97438 * 20 19 18 22 22 C 1.38813 * 120.00211 * 179.97438 * 20 19 18 23 23 N 1.31616 * 120.00310 * 180.02562 * 22 20 19 24 24 Si 1.86808 * 119.99744 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47255 * 89.99712 * 24 22 20 26 26 H 1.48496 * 109.47225 * 209.99940 * 24 22 20 27 27 H 1.48499 * 109.46975 * 330.00048 * 24 22 20 28 28 C 1.53781 * 87.08101 * 25.43256 * 16 15 13 29 29 C 1.53168 * 109.03858 * 303.01870 * 7 6 4 30 30 C 1.53090 * 109.16383 * 56.98247 * 29 7 6 31 31 O 1.42897 * 109.41529 * 302.38908 * 30 29 7 32 32 H 1.08997 * 109.47259 * 300.00108 * 1 2 3 33 33 H 1.09005 * 109.47358 * 60.00013 * 1 2 3 34 34 H 1.08998 * 109.46831 * 180.02562 * 1 2 3 35 35 H 1.08997 * 109.47264 * 240.00449 * 2 1 3 36 36 H 1.08997 * 109.47233 * 59.99875 * 3 2 1 37 37 H 1.09002 * 109.46878 * 179.97438 * 3 2 1 38 38 H 1.09001 * 109.47325 * 299.99695 * 3 2 1 39 39 H 1.09003 * 109.51917 * 297.49784 * 6 4 2 40 40 H 1.08994 * 109.52137 * 57.62654 * 6 4 2 41 41 H 1.08999 * 109.47525 * 305.00340 * 9 7 6 42 42 H 1.09000 * 109.46933 * 65.00511 * 9 7 6 43 43 H 0.96994 * 119.99725 * 0.02562 * 12 10 9 44 44 H 1.08999 * 113.61776 * 203.66203 * 15 13 12 45 45 H 1.08996 * 113.61305 * 334.57035 * 15 13 12 46 46 H 1.08999 * 109.46860 * 207.49638 * 18 16 15 47 47 H 1.08994 * 109.46815 * 327.49941 * 18 16 15 48 48 H 0.97004 * 119.99957 * 359.97438 * 19 18 16 49 49 H 0.96996 * 119.99862 * 180.02562 * 23 22 20 50 50 H 1.09003 * 113.61364 * 220.02350 * 28 16 15 51 51 H 1.08994 * 113.61393 * 89.12062 * 28 16 15 52 52 H 1.09002 * 109.52573 * 176.88941 * 29 7 6 53 53 H 1.09006 * 109.52176 * 297.01191 * 29 7 6 54 54 H 1.09002 * 109.48158 * 62.37494 * 30 29 7 55 55 H 1.09006 * 109.48167 * 182.40716 * 30 29 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 1 1.6764 -1.7487 1.2498 6 6 3.5710 -0.7207 1.2498 7 6 4.0735 -1.3909 2.5322 8 1 3.7512 -2.4321 2.5499 9 6 5.6015 -1.3273 2.5780 10 6 6.1005 -2.0930 3.7763 11 8 5.3117 -2.6365 4.5201 12 7 7.4234 -2.1738 4.0213 13 6 7.9084 -2.9176 5.1864 14 1 7.1618 -3.0011 5.9761 15 6 8.5809 -4.2534 4.8282 16 6 9.8987 -3.4691 4.7137 17 1 10.0833 -3.0659 3.7179 18 6 11.1066 -4.2131 5.2867 19 7 11.6897 -5.0688 4.2503 20 6 12.7887 -5.8351 4.5335 21 1 13.2257 -5.8083 5.5207 22 6 13.3409 -6.6463 3.5518 23 7 14.3969 -7.3832 3.8241 24 14 12.5853 -6.6920 1.8439 25 1 13.2207 -5.6536 0.9935 26 1 12.8073 -8.0303 1.2401 27 1 11.1271 -6.4283 1.9407 28 6 9.2848 -2.4491 5.6872 29 6 3.4916 -0.6538 3.7422 30 6 1.9637 -0.6568 3.6454 31 8 1.5644 -0.0472 2.4162 32 1 -0.3633 0.5138 0.8899 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3633 -1.0277 0.0005 35 1 1.8933 -0.5137 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 3.1299 1.4425 0.0005 38 1 1.6766 1.9564 -0.8900 39 1 3.9356 -1.2726 0.3834 40 1 3.9349 0.3058 1.2075 41 1 6.0110 -1.7678 1.6690 42 1 5.9197 -0.2875 2.6530 43 1 8.0541 -1.7388 3.4266 44 1 8.5735 -4.9782 5.6423 45 1 8.2396 -4.6742 3.8824 46 1 11.8511 -3.4919 5.6237 47 1 10.7886 -4.8276 6.1289 48 1 11.2973 -5.0925 3.3635 49 1 14.7829 -7.9497 3.1379 50 1 9.5118 -1.4133 5.4347 51 1 9.4699 -2.6805 6.7360 52 1 3.7995 -1.1576 4.6584 53 1 3.8549 0.3739 3.7520 54 1 1.5995 -1.6837 3.6772 55 1 1.5454 -0.0966 4.4817 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725365858.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:29 Heat of formation + Delta-G solvation = -98.807933 kcal Electronic energy + Delta-G solvation = -29617.318386 eV Core-core repulsion = 25653.216067 eV Total energy + Delta-G solvation = -3964.102319 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 3.33 seconds Orbital eigenvalues (eV) -41.47772 -40.64703 -39.44029 -36.54016 -36.18315 -35.46772 -34.41813 -33.18281 -30.98460 -30.09490 -28.64910 -27.96403 -26.63702 -25.39942 -24.65772 -24.34707 -22.95582 -21.97288 -20.86583 -20.66919 -20.43345 -19.47299 -18.10206 -17.29897 -16.97122 -16.72378 -16.62950 -16.49300 -16.00336 -15.90183 -15.78004 -15.32760 -15.18028 -15.02914 -14.77639 -14.48682 -14.21266 -14.19450 -13.87279 -13.62685 -13.52005 -13.37053 -13.18713 -13.01396 -12.84027 -12.74554 -12.70380 -12.52850 -12.28749 -12.18104 -11.93649 -11.88471 -11.71711 -11.70745 -11.50876 -11.40513 -11.34117 -11.19579 -11.11208 -10.90260 -10.74839 -10.29368 -9.97641 -9.28586 -8.03782 -5.36893 1.35911 1.40381 1.47853 1.66545 2.19528 2.47502 2.88711 3.26895 3.47057 3.58830 3.61358 3.67469 3.80400 3.87090 3.93882 3.95215 4.06812 4.11024 4.15165 4.24165 4.30434 4.39917 4.50790 4.53411 4.55078 4.66548 4.72437 4.74053 4.81869 4.84037 4.85114 4.86205 4.89845 4.91483 4.96606 4.98935 4.99796 5.06643 5.12042 5.13635 5.16524 5.24064 5.26348 5.28530 5.36508 5.40538 5.50243 5.58239 5.69464 5.75854 6.20528 6.35985 6.60504 7.07713 7.31070 7.84813 8.04014 9.17910 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018629 B = 0.001843 C = 0.001729 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.641863 B =15187.117244 C =16188.548084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.088 4.088 3 C -0.143 4.143 4 C 0.091 3.909 5 H 0.048 0.952 6 C -0.141 4.141 7 C -0.071 4.071 8 H 0.058 0.942 9 C -0.129 4.129 10 C 0.510 3.490 11 O -0.578 6.578 12 N -0.704 5.704 13 C 0.126 3.874 14 H 0.090 0.910 15 C -0.146 4.146 16 C -0.113 4.113 17 H 0.097 0.903 18 C 0.161 3.839 19 N -0.757 5.757 20 C -0.238 4.238 21 H 0.054 0.946 22 C -0.067 4.067 23 N -0.985 5.985 24 Si 0.959 3.041 25 H -0.274 1.274 26 H -0.297 1.297 27 H -0.253 1.253 28 C -0.118 4.118 29 C -0.149 4.149 30 C 0.063 3.937 31 O -0.387 6.387 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.050 0.950 35 H 0.093 0.907 36 H 0.048 0.952 37 H 0.062 0.938 38 H 0.059 0.941 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.115 0.885 42 H 0.118 0.882 43 H 0.414 0.586 44 H 0.082 0.918 45 H 0.056 0.944 46 H 0.026 0.974 47 H 0.021 0.979 48 H 0.366 0.634 49 H 0.258 0.742 50 H 0.093 0.907 51 H 0.100 0.900 52 H 0.071 0.929 53 H 0.070 0.930 54 H 0.041 0.959 55 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.693 21.704 -7.673 36.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.106 4.106 3 C -0.200 4.200 4 C 0.033 3.967 5 H 0.066 0.934 6 C -0.178 4.178 7 C -0.090 4.090 8 H 0.076 0.924 9 C -0.169 4.169 10 C 0.299 3.701 11 O -0.458 6.458 12 N -0.355 5.355 13 C 0.020 3.980 14 H 0.108 0.892 15 C -0.185 4.185 16 C -0.132 4.132 17 H 0.115 0.885 18 C 0.035 3.965 19 N -0.403 5.403 20 C -0.369 4.369 21 H 0.072 0.928 22 C -0.258 4.258 23 N -0.635 5.635 24 Si 0.786 3.214 25 H -0.200 1.200 26 H -0.224 1.224 27 H -0.177 1.177 28 C -0.157 4.157 29 C -0.186 4.186 30 C -0.014 4.014 31 O -0.307 6.307 32 H 0.068 0.932 33 H 0.081 0.919 34 H 0.070 0.930 35 H 0.111 0.889 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.105 0.895 40 H 0.103 0.897 41 H 0.133 0.867 42 H 0.136 0.864 43 H 0.251 0.749 44 H 0.100 0.900 45 H 0.075 0.925 46 H 0.044 0.956 47 H 0.039 0.961 48 H 0.199 0.801 49 H 0.067 0.933 50 H 0.112 0.888 51 H 0.119 0.881 52 H 0.089 0.911 53 H 0.089 0.911 54 H 0.060 0.940 55 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -29.211 21.427 -7.004 36.898 hybrid contribution 0.694 -0.998 -0.752 1.429 sum -28.517 20.429 -7.756 35.927 Atomic orbital electron populations 1.21756 0.94916 1.01571 1.01853 1.21198 0.96387 0.97274 0.95747 1.21796 1.01278 0.95256 1.01643 1.22210 0.93307 0.95193 0.85960 0.93358 1.22316 0.95580 1.02513 0.97423 1.20894 0.93440 0.99483 0.95208 0.92376 1.21772 0.96420 1.02444 0.96230 1.21291 0.81859 0.79913 0.87043 1.90661 1.55894 1.48518 1.50711 1.45697 1.07415 1.53997 1.28421 1.21693 0.95714 0.91832 0.88744 0.89215 1.23454 0.96039 0.97134 1.01851 1.22754 0.92942 0.97186 1.00305 0.88496 1.20822 0.93323 0.91558 0.90755 1.42712 1.33687 1.52185 1.11689 1.19082 1.03564 1.16941 0.97311 0.92799 1.25566 0.98505 0.99107 1.02639 1.69894 1.26024 1.32526 1.35100 0.85344 0.79236 0.76875 0.79926 1.19992 1.22399 1.17728 1.23214 0.92687 0.99607 1.00179 1.22254 0.96149 1.00868 0.99346 1.22550 0.94303 0.97726 0.86828 1.87887 1.75005 1.53989 1.13803 0.93171 0.91899 0.93047 0.88886 0.93256 0.91881 0.92243 0.89465 0.89713 0.86661 0.86439 0.74868 0.89974 0.92476 0.95612 0.96112 0.80117 0.93346 0.88827 0.88133 0.91050 0.91131 0.94032 0.88395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.05 71.98 0.65 -1.01 16 2 C -0.09 -0.96 2.81 -10.79 -0.03 -0.99 16 3 C -0.14 -1.48 8.70 71.98 0.63 -0.86 16 4 C 0.09 1.22 2.38 30.63 0.07 1.30 16 5 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 6 C -0.14 -1.53 4.42 30.69 0.14 -1.40 16 7 C -0.07 -1.02 1.91 -10.68 -0.02 -1.04 16 8 H 0.06 1.09 7.95 -2.39 -0.02 1.07 16 9 C -0.13 -1.49 5.18 29.85 0.15 -1.34 16 10 C 0.51 9.75 7.57 87.66 0.66 10.41 16 11 O -0.58 -15.85 13.61 -3.04 -0.04 -15.89 16 12 N -0.70 -11.82 5.26 -440.04 -2.32 -14.14 16 13 C 0.13 2.63 4.32 45.52 0.20 2.82 16 14 H 0.09 2.12 7.46 -2.39 -0.02 2.10 16 15 C -0.15 -3.76 7.43 31.12 0.23 -3.53 16 16 C -0.11 -2.91 3.63 -10.27 -0.04 -2.94 16 17 H 0.10 2.32 8.14 -2.39 -0.02 2.31 16 18 C 0.16 5.88 6.10 86.38 0.53 6.41 16 19 N -0.76 -35.11 5.41 -343.45 -1.86 -36.97 16 20 C -0.24 -13.74 10.47 84.03 0.88 -12.86 16 21 H 0.05 3.42 8.06 -2.91 -0.02 3.40 16 22 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 23 N -0.98 -63.63 13.97 21.65 0.30 -63.33 16 24 Si 0.96 45.33 27.74 68.60 1.90 47.24 16 25 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 27 H -0.25 -10.76 6.52 99.48 0.65 -10.11 16 28 C -0.12 -2.25 7.39 31.12 0.23 -2.02 16 29 C -0.15 -2.42 5.13 30.68 0.16 -2.26 16 30 C 0.06 1.02 6.84 72.01 0.49 1.51 16 31 O -0.39 -6.59 9.06 -148.98 -1.35 -7.94 16 32 H 0.05 0.72 7.68 -2.39 -0.02 0.70 16 33 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 34 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.05 0.66 7.68 -2.39 -0.02 0.64 16 37 H 0.06 0.56 6.38 -2.39 -0.02 0.55 16 38 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 39 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.08 0.83 6.31 -2.39 -0.02 0.81 16 41 H 0.12 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.12 0.86 8.14 -2.39 -0.02 0.84 16 43 H 0.41 4.74 8.70 -92.71 -0.81 3.93 16 44 H 0.08 2.28 7.90 -2.39 -0.02 2.26 16 45 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 46 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 47 H 0.02 0.79 7.84 -2.39 -0.02 0.78 16 48 H 0.37 16.03 5.53 -92.71 -0.51 15.52 16 49 H 0.26 15.82 8.31 -92.71 -0.77 15.05 16 50 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 51 H 0.10 1.87 8.10 -2.39 -0.02 1.86 16 52 H 0.07 1.49 6.08 -2.39 -0.01 1.48 16 53 H 0.07 1.05 8.14 -2.38 -0.02 1.03 16 54 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 55 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 Total: -1.00 -74.33 420.71 1.52 -72.80 By element: Atomic # 1 Polarization: 30.06 SS G_CDS: -0.52 Total: 29.54 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 5.40 Total: -11.31 kcal Atomic # 7 Polarization: -110.57 SS G_CDS: -3.87 Total: -114.44 kcal Atomic # 8 Polarization: -22.45 SS G_CDS: -1.39 Total: -23.84 kcal Atomic # 14 Polarization: 45.33 SS G_CDS: 1.90 Total: 47.24 kcal Total: -74.33 1.52 -72.80 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725365858.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.004 kcal (2) G-P(sol) polarization free energy of solvation -74.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.33 seconds