Wall clock time and date at job start Wed Apr 1 2020 00:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.47203 * 2 1 4 4 H 1.09005 * 109.46810 * 56.12041 * 3 2 1 5 5 O 1.42907 * 109.47159 * 296.13053 * 3 2 1 6 6 C 1.42899 * 114.00034 * 152.87381 * 5 3 2 7 7 C 1.54265 * 110.03028 * 271.02505 * 6 5 3 8 8 C 1.54889 * 104.19412 * 217.10548 * 7 6 5 9 9 C 1.54889 * 102.74980 * 37.94908 * 8 7 6 10 10 C 1.53872 * 110.02838 * 153.86190 * 6 5 3 11 11 C 1.50694 * 109.47101 * 176.12541 * 3 2 1 12 12 O 1.21284 * 119.99939 * 113.94525 * 11 3 2 13 13 N 1.34776 * 120.00347 * 293.94515 * 11 3 2 14 14 C 1.46494 * 119.99978 * 183.80932 * 13 11 3 15 15 C 1.53002 * 109.46837 * 185.15383 * 14 13 11 16 16 H 1.08996 * 109.59239 * 297.83405 * 15 14 13 17 17 C 1.53193 * 109.58577 * 177.40289 * 15 14 13 18 18 C 1.53042 * 109.31107 * 185.58345 * 17 15 14 19 19 C 1.53042 * 109.54223 * 61.36804 * 18 17 15 20 20 C 1.53194 * 109.30600 * 298.63470 * 19 18 17 21 21 N 1.46919 * 108.77933 * 54.63832 * 20 19 18 22 22 C 1.36935 * 120.63466 * 126.37048 * 21 20 19 23 23 H 1.08001 * 119.99759 * 225.00410 * 22 21 20 24 24 C 1.38806 * 120.00056 * 45.00203 * 22 21 20 25 25 N 1.31624 * 119.99851 * 209.47891 * 24 22 21 26 26 Si 1.86797 * 120.00157 * 29.47896 * 24 22 21 27 27 H 1.48504 * 109.47093 * 93.16219 * 26 24 22 28 28 H 1.48500 * 109.47055 * 213.16130 * 26 24 22 29 29 H 1.48502 * 109.46944 * 333.15871 * 26 24 22 30 30 H 1.08997 * 109.47122 * 55.58338 * 1 2 3 31 31 H 1.08998 * 109.47403 * 295.58062 * 1 2 3 32 32 H 1.09000 * 109.47222 * 175.57889 * 1 2 3 33 33 H 1.08994 * 109.46631 * 120.00138 * 2 1 3 34 34 H 1.09003 * 109.46799 * 240.00069 * 2 1 3 35 35 H 1.08992 * 110.01698 * 32.47229 * 6 5 3 36 36 H 1.08999 * 110.49030 * 335.78616 * 7 6 5 37 37 H 1.09004 * 110.48461 * 98.43023 * 7 6 5 38 38 H 1.08997 * 110.76000 * 279.63118 * 8 7 6 39 39 H 1.09000 * 110.75401 * 156.26048 * 8 7 6 40 40 H 1.08998 * 110.48752 * 203.38294 * 9 8 7 41 41 H 1.08993 * 110.49301 * 80.72952 * 9 8 7 42 42 H 1.09005 * 110.03327 * 238.56761 * 10 6 5 43 43 H 1.08998 * 110.03813 * 359.97438 * 10 6 5 44 44 H 0.97005 * 119.99228 * 3.81211 * 13 11 3 45 45 H 1.08991 * 109.47438 * 305.16037 * 14 13 11 46 46 H 1.09004 * 109.47111 * 65.16509 * 14 13 11 47 47 H 1.09005 * 109.49592 * 305.53081 * 17 15 14 48 48 H 1.09000 * 109.50071 * 65.63054 * 17 15 14 49 49 H 1.09003 * 109.46111 * 301.34430 * 18 17 15 50 50 H 1.09008 * 109.44908 * 181.37679 * 18 17 15 51 51 H 1.08998 * 109.49714 * 178.68644 * 19 18 17 52 52 H 1.08998 * 109.49580 * 58.58230 * 19 18 17 53 53 H 1.09000 * 109.58618 * 294.84200 * 20 19 18 54 54 H 1.09009 * 109.69777 * 174.49410 * 20 19 18 55 55 H 0.97003 * 119.99909 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6210 1.9760 0.8532 5 8 1.6394 2.0894 -1.2096 6 6 1.4986 3.5065 -1.0918 7 6 0.0626 3.8601 -0.6529 8 6 -0.2640 5.1582 -1.4323 9 6 0.4053 4.9093 -2.8067 10 6 1.7165 4.1735 -2.4612 11 6 3.5439 1.4435 0.0960 12 8 4.2106 1.8485 -0.8327 13 7 4.1482 0.9945 1.2139 14 6 5.6055 1.0728 1.3406 15 6 6.0424 0.3852 2.6358 16 1 5.6082 0.9049 3.4899 17 6 7.5707 0.4086 2.7393 18 6 8.0074 -0.4002 3.9630 19 6 7.5563 -1.8539 3.8035 20 6 6.0279 -1.9028 3.7120 21 7 5.5903 -1.0128 2.6280 22 6 4.7767 -1.4774 1.6293 23 1 4.9917 -1.2321 0.5997 24 6 3.6759 -2.2636 1.9401 25 7 3.2444 -3.1614 1.0798 26 14 2.8067 -2.0475 3.5794 27 1 1.6822 -1.0905 3.4211 28 1 2.2804 -3.3584 4.0372 29 1 3.7666 -1.5217 4.5831 30 1 -0.3633 0.5808 -0.8477 31 1 -0.3634 0.4437 0.9269 32 1 -0.3634 -1.0246 -0.0792 33 1 1.8932 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 2.2167 3.8940 -0.3692 36 1 -0.6283 3.0642 -0.9310 37 1 0.0255 4.0407 0.4214 38 1 0.1759 6.0255 -0.9399 39 1 -1.3413 5.2811 -1.5439 40 1 0.6186 5.8554 -3.3042 41 1 -0.2300 4.2827 -3.4326 42 1 2.5399 4.8854 -2.4030 43 1 1.9301 3.4163 -3.2156 44 1 3.6180 0.6194 1.9344 45 1 6.0715 0.5754 0.4901 46 1 5.9126 2.1184 1.3630 47 1 8.0029 -0.0303 1.8400 48 1 7.9127 1.4383 2.8428 49 1 7.5549 0.0242 4.8592 50 1 9.0932 -0.3648 4.0528 51 1 7.8880 -2.4343 4.6644 52 1 7.9887 -2.2713 2.8942 53 1 5.5945 -1.5703 4.6553 54 1 5.7049 -2.9222 3.5007 55 1 2.4753 -3.7111 1.2972 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731544387.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:44 Heat of formation + Delta-G solvation = -98.348138 kcal Electronic energy + Delta-G solvation = -32300.709460 eV Core-core repulsion = 28336.627079 eV Total energy + Delta-G solvation = -3964.082381 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -41.23610 -39.90993 -39.11235 -37.09367 -35.77883 -34.80451 -34.23912 -32.56009 -32.19308 -29.64585 -29.14910 -28.26124 -27.27229 -25.83881 -24.00368 -23.05107 -22.30689 -21.72716 -21.32150 -21.26312 -20.73497 -18.74508 -18.26713 -18.00067 -17.11589 -16.86170 -16.64635 -16.52740 -15.75370 -15.57733 -15.35994 -15.14650 -14.97636 -14.89684 -14.76129 -14.69957 -14.34802 -14.25588 -13.79449 -13.60381 -13.38302 -13.31563 -13.14208 -12.87097 -12.80220 -12.69670 -12.62159 -12.36614 -12.05067 -12.02091 -12.00447 -11.93545 -11.84132 -11.62609 -11.51201 -11.46562 -11.43687 -11.29023 -11.21439 -11.10256 -10.46356 -10.15434 -9.83697 -8.46532 -8.11909 -5.49935 1.38077 1.49105 1.56545 1.64800 2.27082 2.52727 2.72843 3.05286 3.41862 3.62398 3.67410 3.81466 3.89710 3.93516 3.94902 4.03589 4.14595 4.21492 4.26110 4.37183 4.37869 4.48035 4.51301 4.52866 4.56692 4.59024 4.69681 4.71878 4.77724 4.80567 4.83496 4.93338 4.94782 5.03552 5.04423 5.07657 5.10437 5.13562 5.19008 5.20345 5.23471 5.28706 5.30260 5.35092 5.36534 5.38207 5.46451 5.62370 5.68025 6.02883 6.19751 6.39273 6.70627 7.08501 7.34644 7.70740 8.22855 9.06502 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014512 B = 0.003768 C = 0.003237 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.032295 B = 7429.836960 C = 8648.123096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 C 0.089 3.911 4 H 0.103 0.897 5 O -0.363 6.363 6 C 0.075 3.925 7 C -0.146 4.146 8 C -0.116 4.116 9 C -0.117 4.117 10 C -0.122 4.122 11 C 0.481 3.519 12 O -0.585 6.585 13 N -0.685 5.685 14 C 0.140 3.860 15 C 0.156 3.844 16 H 0.052 0.948 17 C -0.123 4.123 18 C -0.102 4.102 19 C -0.132 4.132 20 C 0.138 3.862 21 N -0.609 5.609 22 C -0.245 4.245 23 H 0.026 0.974 24 C 0.018 3.982 25 N -0.924 5.924 26 Si 0.880 3.120 27 H -0.272 1.272 28 H -0.310 1.310 29 H -0.237 1.237 30 H 0.068 0.932 31 H 0.068 0.932 32 H 0.055 0.945 33 H 0.071 0.929 34 H 0.043 0.957 35 H 0.050 0.950 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.066 0.934 42 H 0.071 0.929 43 H 0.056 0.944 44 H 0.405 0.595 45 H 0.033 0.967 46 H 0.075 0.925 47 H 0.045 0.955 48 H 0.084 0.916 49 H 0.067 0.933 50 H 0.075 0.925 51 H 0.074 0.926 52 H 0.043 0.957 53 H 0.034 0.966 54 H 0.037 0.963 55 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.781 14.944 4.181 15.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.146 4.146 3 C 0.028 3.972 4 H 0.120 0.880 5 O -0.281 6.281 6 C 0.017 3.983 7 C -0.184 4.184 8 C -0.153 4.153 9 C -0.155 4.155 10 C -0.160 4.160 11 C 0.267 3.733 12 O -0.467 6.467 13 N -0.336 5.336 14 C 0.016 3.984 15 C 0.050 3.950 16 H 0.070 0.930 17 C -0.162 4.162 18 C -0.140 4.140 19 C -0.171 4.171 20 C 0.014 3.986 21 N -0.335 5.335 22 C -0.375 4.375 23 H 0.044 0.956 24 C -0.181 4.181 25 N -0.565 5.565 26 Si 0.705 3.295 27 H -0.198 1.198 28 H -0.238 1.238 29 H -0.161 1.161 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.061 0.939 35 H 0.069 0.931 36 H 0.094 0.906 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.103 0.897 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.075 0.925 44 H 0.241 0.759 45 H 0.052 0.948 46 H 0.093 0.907 47 H 0.064 0.936 48 H 0.103 0.897 49 H 0.086 0.914 50 H 0.093 0.907 51 H 0.093 0.907 52 H 0.062 0.938 53 H 0.052 0.948 54 H 0.055 0.945 55 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.450 15.034 3.310 15.775 hybrid contribution -0.430 -1.062 0.717 1.352 sum -3.880 13.972 4.027 15.049 Atomic orbital electron populations 1.21650 0.92688 1.02196 1.02806 1.21435 0.98469 0.92235 1.02420 1.21981 0.89227 0.96175 0.89821 0.87951 1.88036 1.87167 1.20638 1.32261 1.23054 0.96921 0.80102 0.98188 1.22945 0.95365 0.99199 1.00851 1.22428 1.01425 0.96531 0.94908 1.22335 0.94939 1.00327 0.97856 1.22183 0.99337 0.98898 0.95561 1.21753 0.92135 0.77261 0.82127 1.90596 1.67326 1.50255 1.38509 1.45891 1.08300 1.60270 1.19090 1.21237 0.80318 0.99001 0.97867 1.21044 0.94436 0.85041 0.94432 0.93032 1.21888 0.94852 1.00869 0.98642 1.21355 1.00834 0.94279 0.97514 1.21961 0.96410 0.97818 1.00941 1.21358 0.93606 0.93236 0.90424 1.44422 1.55898 1.05553 1.27674 1.18185 1.03622 1.28989 0.86715 0.95596 1.25952 0.97481 0.96389 0.98278 1.70125 1.26543 1.20630 1.39216 0.86781 0.80915 0.77175 0.84586 1.19770 1.23790 1.16081 0.91272 0.91290 0.92582 0.91019 0.93855 0.93136 0.90637 0.90530 0.90482 0.89711 0.89932 0.91475 0.91065 0.92530 0.75857 0.94846 0.90716 0.93581 0.89702 0.91391 0.90662 0.90728 0.93845 0.94849 0.94462 0.93067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.11 9.85 71.98 0.71 -3.40 16 2 C -0.11 -4.12 5.62 30.59 0.17 -3.95 16 3 C 0.09 3.18 2.36 29.85 0.07 3.25 16 4 H 0.10 3.01 7.84 -2.38 -0.02 2.99 16 5 O -0.36 -12.79 8.52 -130.01 -1.11 -13.90 16 6 C 0.07 2.09 3.11 31.32 0.10 2.19 16 7 C -0.15 -3.03 6.50 31.67 0.21 -2.83 16 8 C -0.12 -1.87 6.91 31.88 0.22 -1.65 16 9 C -0.12 -2.16 6.83 31.67 0.22 -1.95 16 10 C -0.12 -3.14 6.61 31.32 0.21 -2.93 16 11 C 0.48 20.15 6.98 87.66 0.61 20.76 16 12 O -0.59 -28.43 16.47 15.92 0.26 -28.17 16 13 N -0.69 -27.25 3.78 -463.08 -1.75 -29.00 16 14 C 0.14 5.31 4.51 86.38 0.39 5.69 16 15 C 0.16 5.42 3.03 44.97 0.14 5.56 16 16 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 17 C -0.12 -3.56 5.37 30.67 0.16 -3.40 16 18 C -0.10 -2.65 5.88 30.62 0.18 -2.47 16 19 C -0.13 -4.12 6.08 30.67 0.19 -3.94 16 20 C 0.14 5.36 4.55 86.36 0.39 5.76 16 21 N -0.61 -25.77 2.38 -675.21 -1.61 -27.37 16 22 C -0.25 -12.51 6.53 84.03 0.55 -11.96 16 23 H 0.03 1.60 6.86 -2.91 -0.02 1.58 16 24 C 0.02 0.96 4.15 84.86 0.35 1.31 16 25 N -0.92 -53.11 13.97 21.65 0.30 -52.81 16 26 Si 0.88 39.15 26.64 68.60 1.83 40.98 16 27 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 28 H -0.31 -14.67 7.11 99.48 0.71 -13.96 16 29 H -0.24 -9.76 5.13 99.48 0.51 -9.25 16 30 H 0.07 1.94 7.67 -2.39 -0.02 1.92 16 31 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 32 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.07 3.06 6.62 -2.39 -0.02 3.04 16 34 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.05 1.47 7.79 -2.39 -0.02 1.45 16 36 H 0.07 1.64 8.08 -2.39 -0.02 1.62 16 37 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 38 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 43 H 0.06 1.70 7.95 -2.39 -0.02 1.68 16 44 H 0.41 15.98 6.84 -92.70 -0.63 15.34 16 45 H 0.03 1.51 7.51 -2.39 -0.02 1.49 16 46 H 0.07 2.48 8.14 -2.38 -0.02 2.46 16 47 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 48 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 50 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 51 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 52 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 53 H 0.03 1.24 6.57 -2.39 -0.02 1.23 16 54 H 0.04 1.63 7.12 -2.38 -0.02 1.61 16 55 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 Total: -1.00 -66.13 413.57 2.80 -63.33 By element: Atomic # 1 Polarization: 40.88 SS G_CDS: 0.01 Total: 40.89 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 4.86 Total: 6.05 kcal Atomic # 7 Polarization: -106.13 SS G_CDS: -3.05 Total: -109.18 kcal Atomic # 8 Polarization: -41.22 SS G_CDS: -0.85 Total: -42.07 kcal Atomic # 14 Polarization: 39.15 SS G_CDS: 1.83 Total: 40.98 kcal Total: -66.13 2.80 -63.33 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731544387.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.020 kcal (2) G-P(sol) polarization free energy of solvation -66.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds