Wall clock time and date at job start Wed Apr 1 2020 00:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.47335 * 2 1 4 4 H 1.08997 * 109.47433 * 54.13422 * 3 2 1 5 5 O 1.42898 * 109.46935 * 294.13561 * 3 2 1 6 6 C 1.42899 * 114.00109 * 151.89439 * 5 3 2 7 7 C 1.54268 * 110.02920 * 270.65127 * 6 5 3 8 8 C 1.54969 * 104.16132 * 217.13335 * 7 6 5 9 9 C 1.54894 * 102.77297 * 37.89207 * 8 7 6 10 10 C 1.53873 * 110.03537 * 153.43608 * 6 5 3 11 11 C 1.50700 * 109.47437 * 174.13558 * 3 2 1 12 12 O 1.21290 * 120.00098 * 114.99247 * 11 3 2 13 13 N 1.34779 * 119.99940 * 295.00331 * 11 3 2 14 14 C 1.46498 * 119.99649 * 179.97438 * 13 11 3 15 15 C 1.53003 * 109.47142 * 179.97438 * 14 13 11 16 16 H 1.09005 * 109.58128 * 61.41645 * 15 14 13 17 17 C 1.53181 * 109.58940 * 181.70361 * 15 14 13 18 18 C 1.53049 * 109.31271 * 174.56564 * 17 15 14 19 19 C 1.53042 * 109.52514 * 298.64188 * 18 17 15 20 20 C 1.53164 * 109.32777 * 61.36936 * 19 18 17 21 21 N 1.46921 * 108.77105 * 305.35635 * 20 19 18 22 22 C 1.36935 * 120.62985 * 233.58842 * 21 20 19 23 23 H 1.07998 * 119.99829 * 147.24377 * 22 21 20 24 24 C 1.38813 * 120.00072 * 327.23590 * 22 21 20 25 25 N 1.31615 * 119.99715 * 347.55238 * 24 22 21 26 26 Si 1.86795 * 119.99997 * 167.54362 * 24 22 21 27 27 H 1.48504 * 109.47288 * 0.02562 * 26 24 22 28 28 H 1.48499 * 109.46971 * 120.00409 * 26 24 22 29 29 H 1.48497 * 109.47452 * 240.00343 * 26 24 22 30 30 H 1.09002 * 109.46572 * 55.74380 * 1 2 3 31 31 H 1.08998 * 109.47056 * 175.73697 * 1 2 3 32 32 H 1.09001 * 109.47178 * 295.74410 * 1 2 3 33 33 H 1.08994 * 109.47297 * 239.99122 * 2 1 3 34 34 H 1.09004 * 109.46688 * 119.99593 * 2 1 3 35 35 H 1.08994 * 110.01670 * 32.03919 * 6 5 3 36 36 H 1.09000 * 110.49007 * 335.78164 * 7 6 5 37 37 H 1.08997 * 110.48770 * 98.42728 * 7 6 5 38 38 H 1.08997 * 110.72326 * 279.58160 * 8 7 6 39 39 H 1.08998 * 110.76464 * 156.22210 * 8 7 6 40 40 H 1.09000 * 110.48587 * 203.40808 * 9 8 7 41 41 H 1.09002 * 110.48870 * 80.76193 * 9 8 7 42 42 H 1.08997 * 110.03547 * 238.57173 * 10 6 5 43 43 H 1.08999 * 110.03146 * 359.94936 * 10 6 5 44 44 H 0.97000 * 120.00224 * 359.97438 * 13 11 3 45 45 H 1.09004 * 109.47419 * 59.99632 * 14 13 11 46 46 H 1.08995 * 109.47308 * 299.99446 * 14 13 11 47 47 H 1.08997 * 109.49789 * 54.61458 * 17 15 14 48 48 H 1.09000 * 109.52774 * 294.52704 * 17 15 14 49 49 H 1.08996 * 109.46008 * 58.65771 * 18 17 15 50 50 H 1.09004 * 109.45758 * 178.62985 * 18 17 15 51 51 H 1.09000 * 109.49636 * 181.30985 * 19 18 17 52 52 H 1.09005 * 109.49685 * 301.40616 * 19 18 17 53 53 H 1.09003 * 109.58821 * 185.56611 * 20 19 18 54 54 H 1.09005 * 109.70193 * 65.21253 * 20 19 18 55 55 H 0.97002 * 119.99537 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5935 1.9858 0.8328 5 8 1.6794 2.0751 -1.2295 6 6 1.5135 3.4908 -1.1279 7 6 0.0536 3.8266 -0.7592 8 6 -0.2536 5.1154 -1.5630 9 6 0.4842 4.8678 -2.9023 10 6 1.7874 4.1528 -2.4897 11 6 3.5400 1.4450 0.1452 12 8 4.2361 1.8571 -0.7586 13 7 4.1081 0.9891 1.2792 14 6 5.5663 0.9910 1.4200 15 6 5.9470 0.4277 2.7907 16 1 5.5974 -0.6015 2.8727 17 6 7.4692 0.4679 2.9577 18 6 7.8342 0.0313 4.3784 19 6 7.2116 0.9994 5.3870 20 6 5.6867 0.9652 5.2477 21 7 5.3335 1.2420 3.8487 22 6 4.4489 2.2398 3.5368 23 1 4.5640 2.7956 2.6180 24 6 3.4044 2.5367 4.4015 25 7 3.1132 1.7156 5.3880 26 14 2.4122 4.1015 4.1649 27 1 2.9360 4.8474 2.9925 28 1 0.9871 3.7538 3.9335 29 1 2.5242 4.9472 5.3804 30 1 -0.3632 0.5785 -0.8494 31 1 -0.3633 -1.0248 -0.0764 32 1 -0.3633 0.4464 0.9257 33 1 1.8933 -0.5139 -0.8898 34 1 1.8933 -0.5138 0.8901 35 1 2.1908 3.8927 -0.3744 36 1 -0.6122 3.0193 -1.0641 37 1 -0.0364 4.0130 0.3109 38 1 0.1502 5.9917 -1.0559 39 1 -1.3259 5.2223 -1.7268 40 1 0.7078 5.8138 -3.3952 41 1 -0.1118 4.2286 -3.5537 42 1 2.5972 4.8765 -2.3969 43 1 2.0478 3.3943 -3.2279 44 1 3.5514 0.6597 2.0021 45 1 5.9386 2.0116 1.3308 46 1 6.0077 0.3735 0.6378 47 1 7.8273 1.4829 2.7857 48 1 7.9325 -0.2081 2.2390 49 1 7.4543 -0.9744 4.5581 50 1 8.9183 0.0356 4.4923 51 1 7.4911 0.7014 6.3975 52 1 7.5723 2.0094 5.1921 53 1 5.2437 1.7234 5.8934 54 1 5.3138 -0.0192 5.5308 55 1 2.3835 1.9232 5.9925 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731544389.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:10:49 Heat of formation + Delta-G solvation = -102.162036 kcal Electronic energy + Delta-G solvation = -32224.233657 eV Core-core repulsion = 28259.985893 eV Total energy + Delta-G solvation = -3964.247764 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 6.65 seconds Orbital eigenvalues (eV) -41.24954 -39.88386 -39.09597 -37.12012 -35.74994 -34.91290 -34.24649 -32.29561 -31.70022 -29.70541 -29.17304 -28.26879 -27.32872 -25.95302 -23.83584 -23.07703 -22.30185 -21.78108 -21.34304 -21.18639 -20.68006 -18.81102 -18.26335 -17.88330 -17.34816 -16.87757 -16.66233 -16.10508 -15.84605 -15.70377 -15.43630 -15.14213 -14.90213 -14.88091 -14.72041 -14.53647 -14.31015 -14.08439 -13.66355 -13.56301 -13.42707 -13.23706 -12.92313 -12.86378 -12.80376 -12.75452 -12.59516 -12.35230 -12.10603 -12.05793 -12.05283 -11.99679 -11.86511 -11.81038 -11.55931 -11.53962 -11.52762 -11.30485 -11.12348 -11.05559 -10.55194 -10.18688 -9.84825 -8.54765 -7.84939 -5.33640 1.34275 1.42274 1.47693 1.64298 2.19731 2.45461 2.70448 3.29845 3.56104 3.56946 3.61079 3.77321 3.87826 3.96258 3.98714 4.01478 4.21061 4.22126 4.26148 4.35861 4.41898 4.46588 4.49119 4.53091 4.56550 4.64239 4.66393 4.74487 4.75695 4.84798 4.85666 4.86550 4.97911 4.98752 5.04605 5.05621 5.13374 5.15135 5.19475 5.21001 5.22895 5.27428 5.37345 5.38153 5.41375 5.45460 5.61015 5.62464 5.73598 5.83227 6.10620 6.43815 6.71002 7.18215 7.32158 7.86420 8.41076 9.19140 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012456 B = 0.003939 C = 0.003536 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.410056 B = 7106.442269 C = 7916.738061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.108 4.108 3 C 0.079 3.921 4 H 0.078 0.922 5 O -0.354 6.354 6 C 0.076 3.924 7 C -0.148 4.148 8 C -0.119 4.119 9 C -0.113 4.113 10 C -0.119 4.119 11 C 0.480 3.520 12 O -0.584 6.584 13 N -0.689 5.689 14 C 0.140 3.860 15 C 0.161 3.839 16 H 0.035 0.965 17 C -0.123 4.123 18 C -0.102 4.102 19 C -0.136 4.136 20 C 0.179 3.821 21 N -0.601 5.601 22 C -0.235 4.235 23 H 0.055 0.945 24 C -0.027 4.027 25 N -0.920 5.920 26 Si 0.928 3.072 27 H -0.283 1.283 28 H -0.282 1.282 29 H -0.294 1.294 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.031 0.969 36 H 0.086 0.914 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.077 0.923 42 H 0.064 0.936 43 H 0.069 0.931 44 H 0.412 0.588 45 H 0.040 0.960 46 H 0.071 0.929 47 H 0.051 0.949 48 H 0.081 0.919 49 H 0.059 0.941 50 H 0.074 0.926 51 H 0.065 0.935 52 H 0.044 0.956 53 H 0.047 0.953 54 H 0.004 0.996 55 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.449 -1.502 -9.634 10.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.146 4.146 3 C 0.018 3.982 4 H 0.096 0.904 5 O -0.272 6.272 6 C 0.018 3.982 7 C -0.185 4.185 8 C -0.157 4.157 9 C -0.150 4.150 10 C -0.156 4.156 11 C 0.267 3.733 12 O -0.465 6.465 13 N -0.341 5.341 14 C 0.015 3.985 15 C 0.055 3.945 16 H 0.053 0.947 17 C -0.162 4.162 18 C -0.140 4.140 19 C -0.175 4.175 20 C 0.054 3.946 21 N -0.326 5.326 22 C -0.366 4.366 23 H 0.073 0.927 24 C -0.224 4.224 25 N -0.566 5.566 26 Si 0.758 3.242 27 H -0.208 1.208 28 H -0.208 1.208 29 H -0.221 1.221 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.050 0.950 36 H 0.105 0.895 37 H 0.076 0.924 38 H 0.085 0.915 39 H 0.108 0.892 40 H 0.101 0.899 41 H 0.096 0.904 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.250 0.750 45 H 0.058 0.942 46 H 0.089 0.911 47 H 0.070 0.930 48 H 0.100 0.900 49 H 0.077 0.923 50 H 0.092 0.908 51 H 0.083 0.917 52 H 0.063 0.937 53 H 0.066 0.934 54 H 0.022 0.978 55 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -3.112 -1.301 -10.331 10.868 hybrid contribution -0.511 1.105 1.103 1.642 sum -3.623 -0.196 -9.228 9.916 Atomic orbital electron populations 1.21695 0.93047 1.03060 1.02168 1.21554 0.98479 0.91099 1.03487 1.22096 0.89606 0.97781 0.88748 0.90384 1.87962 1.88354 1.20322 1.30546 1.22974 0.96183 0.80747 0.98249 1.22955 0.95608 0.99848 1.00129 1.22464 1.01536 0.96191 0.95492 1.22322 0.94669 1.00685 0.97356 1.22162 0.99197 0.99124 0.95158 1.21750 0.92196 0.77415 0.81984 1.90606 1.65250 1.49076 1.41599 1.46101 1.08316 1.62624 1.17065 1.21234 0.80451 0.99958 0.96810 1.20871 0.93293 0.93463 0.86853 0.94743 1.21900 0.95216 1.01275 0.97826 1.21343 1.00146 0.98469 0.94000 1.22053 0.97480 0.99004 0.98951 1.20558 0.91093 0.97432 0.85513 1.44240 1.49620 1.37442 1.01285 1.19148 1.02941 1.08820 1.05682 0.92703 1.25479 0.97873 0.99617 0.99432 1.70093 1.30957 1.36180 1.19365 0.85814 0.79523 0.81847 0.77064 1.20830 1.20823 1.22098 0.91972 0.90497 0.92804 0.90639 0.89719 0.95037 0.89519 0.92408 0.91538 0.89230 0.89916 0.90416 0.91711 0.91183 0.75019 0.94163 0.91094 0.93033 0.90040 0.92272 0.90780 0.91671 0.93748 0.93429 0.97830 0.94107 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.22 9.86 71.98 0.71 -2.51 16 2 C -0.11 -2.95 5.61 30.59 0.17 -2.78 16 3 C 0.08 2.67 2.33 29.85 0.07 2.74 16 4 H 0.08 2.71 7.84 -2.39 -0.02 2.69 16 5 O -0.35 -11.90 8.60 -129.99 -1.12 -13.02 16 6 C 0.08 2.38 3.12 31.32 0.10 2.48 16 7 C -0.15 -3.73 6.53 31.70 0.21 -3.52 16 8 C -0.12 -2.39 6.91 31.91 0.22 -2.17 16 9 C -0.11 -2.22 6.83 31.67 0.22 -2.00 16 10 C -0.12 -3.19 6.61 31.32 0.21 -2.99 16 11 C 0.48 19.06 7.04 87.66 0.62 19.68 16 12 O -0.58 -26.74 16.49 15.93 0.26 -26.48 16 13 N -0.69 -26.84 3.72 -463.05 -1.72 -28.56 16 14 C 0.14 5.31 4.44 86.38 0.38 5.69 16 15 C 0.16 6.03 3.02 44.97 0.14 6.16 16 16 H 0.03 1.30 8.14 -2.38 -0.02 1.29 16 17 C -0.12 -3.82 5.37 30.67 0.16 -3.66 16 18 C -0.10 -3.01 5.89 30.62 0.18 -2.83 16 19 C -0.14 -4.78 6.08 30.66 0.19 -4.59 16 20 C 0.18 7.99 5.25 86.35 0.45 8.45 16 21 N -0.60 -27.12 2.96 -675.28 -2.00 -29.12 16 22 C -0.24 -11.70 6.82 84.03 0.57 -11.12 16 23 H 0.06 2.87 5.95 -2.91 -0.02 2.86 16 24 C -0.03 -1.39 4.99 84.86 0.42 -0.97 16 25 N -0.92 -49.63 11.27 21.65 0.24 -49.38 16 26 Si 0.93 42.85 29.57 68.60 2.03 44.87 16 27 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 28 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 29 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 30 H 0.06 1.40 7.74 -2.39 -0.02 1.39 16 31 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 34 H 0.08 2.25 7.75 -2.38 -0.02 2.23 16 35 H 0.03 1.16 7.82 -2.39 -0.02 1.14 16 36 H 0.09 2.03 8.08 -2.39 -0.02 2.01 16 37 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 40 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 42 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 43 H 0.07 1.99 7.95 -2.39 -0.02 1.97 16 44 H 0.41 16.59 6.98 -92.71 -0.65 15.94 16 45 H 0.04 1.71 7.49 -2.38 -0.02 1.70 16 46 H 0.07 2.46 8.14 -2.39 -0.02 2.44 16 47 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 51 H 0.06 2.04 8.14 -2.39 -0.02 2.02 16 52 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 53 H 0.05 2.44 6.28 -2.39 -0.01 2.42 16 54 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 55 H 0.25 13.23 8.31 -92.71 -0.77 12.46 16 Total: -1.00 -61.21 419.38 2.91 -58.30 By element: Atomic # 1 Polarization: 37.14 SS G_CDS: 0.19 Total: 37.33 kcal Atomic # 6 Polarization: 1.04 SS G_CDS: 5.02 Total: 6.06 kcal Atomic # 7 Polarization: -103.59 SS G_CDS: -3.48 Total: -107.06 kcal Atomic # 8 Polarization: -38.64 SS G_CDS: -0.85 Total: -39.50 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.87 kcal Total: -61.21 2.91 -58.30 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731544389.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.863 kcal (2) G-P(sol) polarization free energy of solvation -61.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.65 seconds