Wall clock time and date at job start Tue Mar 31 2020 22:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47121 * 2 1 4 4 H 1.09001 * 109.47403 * 303.06155 * 3 2 1 5 5 C 1.53002 * 109.46979 * 63.05851 * 3 2 1 6 6 C 1.52999 * 109.47242 * 62.19354 * 5 3 2 7 7 C 1.54267 * 110.03366 * 279.66627 * 6 5 3 8 8 C 1.54889 * 104.19879 * 217.10493 * 7 6 5 9 9 C 1.54888 * 102.74484 * 37.93615 * 8 7 6 10 10 C 1.53873 * 110.03662 * 162.49887 * 6 5 3 11 11 C 1.50694 * 109.47097 * 183.06016 * 3 2 1 12 12 O 1.21290 * 119.99671 * 240.00066 * 11 3 2 13 13 N 1.34769 * 120.00375 * 59.72350 * 11 3 2 14 14 C 1.46499 * 120.00414 * 180.27557 * 13 11 3 15 15 C 1.53005 * 109.47292 * 180.02562 * 14 13 11 16 16 H 1.09007 * 109.51097 * 59.90016 * 15 14 13 17 17 C 1.53289 * 109.51241 * 179.97438 * 15 14 13 18 18 N 1.47155 * 108.38405 * 172.22461 * 17 15 14 19 19 C 1.36937 * 120.97881 * 129.48736 * 18 17 15 20 20 H 1.07996 * 120.00059 * 210.15564 * 19 18 17 21 21 C 1.38812 * 120.00176 * 30.16185 * 19 18 17 22 22 N 1.31623 * 120.00001 * 10.77686 * 21 19 18 23 23 Si 1.86804 * 120.00236 * 190.77556 * 21 19 18 24 24 H 1.48495 * 109.46834 * 89.99696 * 23 21 19 25 25 H 1.48504 * 109.47010 * 210.00091 * 23 21 19 26 26 H 1.48493 * 109.46944 * 329.99937 * 23 21 19 27 27 C 1.47148 * 118.03805 * 309.47225 * 18 17 15 28 28 C 1.53296 * 108.38553 * 50.52998 * 27 18 17 29 29 O 1.42955 * 109.22290 * 307.70057 * 28 27 18 30 30 H 1.09000 * 109.47144 * 305.04215 * 1 2 3 31 31 H 1.09007 * 109.47261 * 65.04064 * 1 2 3 32 32 H 1.08996 * 109.47265 * 185.04024 * 1 2 3 33 33 H 1.08996 * 109.46663 * 240.00369 * 2 1 3 34 34 H 1.08998 * 109.46663 * 120.00274 * 2 1 3 35 35 H 1.08996 * 109.47182 * 182.19418 * 5 3 2 36 36 H 1.09008 * 109.47273 * 302.19660 * 5 3 2 37 37 H 1.09003 * 110.01885 * 41.10358 * 6 5 3 38 38 H 1.09000 * 110.48446 * 335.77958 * 7 6 5 39 39 H 1.09004 * 110.49092 * 98.42278 * 7 6 5 40 40 H 1.09004 * 110.75468 * 279.62817 * 8 7 6 41 41 H 1.08992 * 110.75726 * 156.25560 * 8 7 6 42 42 H 1.09003 * 110.48614 * 203.37920 * 9 8 7 43 43 H 1.09002 * 110.59989 * 80.80228 * 9 8 7 44 44 H 1.08999 * 110.02861 * 238.56951 * 10 6 5 45 45 H 1.08996 * 110.02861 * 359.94624 * 10 6 5 46 46 H 0.97008 * 119.99873 * 0.28306 * 13 11 3 47 47 H 1.09001 * 109.47330 * 300.00209 * 14 13 11 48 48 H 1.09000 * 109.47039 * 59.99953 * 14 13 11 49 49 H 1.08994 * 109.68674 * 291.95084 * 17 15 14 50 50 H 1.09007 * 109.68278 * 52.47025 * 17 15 14 51 51 H 0.97003 * 120.00315 * 180.02562 * 22 21 19 52 52 H 1.08994 * 109.68399 * 170.25827 * 27 18 17 53 53 H 1.08999 * 109.67954 * 290.77044 * 27 18 17 54 54 H 1.08996 * 109.51327 * 67.62414 * 28 27 18 55 55 H 1.08997 * 109.51084 * 187.77654 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6326 1.9720 -0.8613 5 6 1.5938 2.1412 1.2860 6 6 2.2102 1.4307 2.4927 7 6 1.3957 0.1657 2.8339 8 6 1.4147 0.1077 4.3816 9 6 1.2944 1.5994 4.7810 10 6 2.1458 2.3421 3.7307 11 6 3.5450 1.4432 -0.0758 12 8 4.1967 1.9524 0.8114 13 7 4.1671 0.8731 -1.1267 14 6 5.6304 0.8684 -1.1975 15 6 6.0767 0.1654 -2.4810 16 1 5.6718 0.6929 -3.3448 17 6 7.6077 0.1605 -2.5563 18 7 8.0138 -0.6790 -3.6947 19 6 8.9012 -0.2172 -4.6299 20 1 8.8403 -0.5655 -5.6503 21 6 9.8790 0.6984 -4.2662 22 7 10.0928 0.9628 -2.9946 23 14 10.8917 1.5554 -5.5814 24 1 10.2148 2.8139 -5.9855 25 1 12.2394 1.8691 -5.0424 26 1 11.0257 0.6644 -6.7617 27 6 7.4384 -2.0293 -3.7983 28 6 5.9155 -1.9177 -3.6625 29 8 5.6013 -1.1828 -2.4772 30 1 -0.3633 0.5901 0.8414 31 1 -0.3634 0.4337 -0.9317 32 1 -0.3633 -1.0236 0.0903 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.9237 3.1799 1.2684 36 1 0.5068 2.1063 1.3601 37 1 3.2451 1.1630 2.2795 38 1 0.3733 0.2602 2.4683 39 1 1.8720 -0.7198 2.4131 40 1 2.3535 -0.3138 4.7409 41 1 0.5652 -0.4625 4.7572 42 1 1.6968 1.7602 5.7812 43 1 0.2560 1.9272 4.7315 44 1 3.1493 2.5161 4.1188 45 1 1.6762 3.2911 3.4716 46 1 3.6459 0.4659 -1.8364 47 1 5.9974 1.8948 -1.1994 48 1 6.0342 0.3398 -0.3340 49 1 7.9714 1.1776 -2.7021 50 1 8.0194 -0.2477 -1.6333 51 1 10.7759 1.6029 -2.7405 52 1 7.6899 -2.4623 -4.7664 53 1 7.8334 -2.6588 -3.0009 54 1 5.5096 -1.3988 -4.5308 55 1 5.4817 -2.9155 -3.5980 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732385635.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:36:30 Heat of formation + Delta-G solvation = -98.529708 kcal Electronic energy + Delta-G solvation = -31063.142537 eV Core-core repulsion = 27099.052282 eV Total energy + Delta-G solvation = -3964.090254 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.45855 -40.18177 -39.04131 -36.46176 -36.08975 -35.80721 -33.26655 -32.49510 -31.50810 -29.48108 -29.28823 -28.66040 -27.04633 -25.24623 -24.94593 -23.38542 -22.47037 -21.61450 -21.45775 -20.82305 -20.20823 -18.92953 -18.12685 -17.53548 -17.14812 -17.10761 -16.63971 -16.23449 -16.10986 -15.82746 -15.51527 -15.36990 -15.05454 -14.99658 -14.62334 -14.58580 -14.20183 -14.10836 -13.89863 -13.51699 -13.38653 -13.15287 -12.95231 -12.88359 -12.72528 -12.70449 -12.54111 -12.19126 -12.16189 -12.09829 -11.99154 -11.91144 -11.86676 -11.51813 -11.44341 -11.33137 -11.23674 -11.13083 -10.92551 -10.78764 -10.60250 -10.42696 -9.98164 -8.72381 -7.92513 -5.46293 1.45293 1.45712 1.55318 1.70413 2.21120 2.46201 2.78489 3.23475 3.49185 3.66186 3.76692 3.79177 3.94024 4.00926 4.05439 4.08627 4.14463 4.25899 4.41163 4.45580 4.50776 4.51005 4.54602 4.59645 4.64473 4.67558 4.72652 4.79305 4.82493 4.84171 4.87127 4.96594 4.98226 5.00652 5.02506 5.06331 5.14008 5.18861 5.21466 5.23420 5.30002 5.32715 5.39692 5.44048 5.49504 5.52520 5.56267 5.57615 5.63790 5.79736 6.26212 6.32632 6.62261 7.04473 7.33036 7.71655 8.27010 9.12718 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018190 B = 0.002407 C = 0.002275 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.953736 B =11628.894947 C =12307.440715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.129 4.129 3 C -0.098 4.098 4 H 0.115 0.885 5 C -0.089 4.089 6 C -0.104 4.104 7 C -0.120 4.120 8 C -0.129 4.129 9 C -0.120 4.120 10 C -0.119 4.119 11 C 0.508 3.492 12 O -0.576 6.576 13 N -0.711 5.711 14 C 0.145 3.855 15 C 0.078 3.922 16 H 0.063 0.937 17 C 0.162 3.838 18 N -0.615 5.615 19 C -0.267 4.267 20 H 0.074 0.926 21 C -0.050 4.050 22 N -0.937 5.937 23 Si 0.973 3.027 24 H -0.283 1.283 25 H -0.296 1.296 26 H -0.265 1.265 27 C 0.101 3.899 28 C 0.057 3.943 29 O -0.388 6.388 30 H 0.068 0.932 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.066 0.934 34 H 0.075 0.925 35 H 0.051 0.949 36 H 0.095 0.905 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.060 0.940 40 H 0.051 0.949 41 H 0.078 0.922 42 H 0.061 0.939 43 H 0.077 0.923 44 H 0.039 0.961 45 H 0.064 0.936 46 H 0.413 0.587 47 H 0.070 0.930 48 H 0.053 0.947 49 H 0.065 0.935 50 H -0.003 1.003 51 H 0.251 0.749 52 H 0.072 0.928 53 H 0.014 0.986 54 H 0.054 0.946 55 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.760 -1.621 7.379 25.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.166 4.166 3 C -0.119 4.119 4 H 0.133 0.867 5 C -0.126 4.126 6 C -0.122 4.122 7 C -0.157 4.157 8 C -0.167 4.167 9 C -0.158 4.158 10 C -0.157 4.157 11 C 0.296 3.704 12 O -0.456 6.456 13 N -0.363 5.363 14 C 0.019 3.981 15 C 0.018 3.982 16 H 0.081 0.919 17 C 0.035 3.965 18 N -0.339 5.339 19 C -0.396 4.396 20 H 0.091 0.909 21 C -0.246 4.246 22 N -0.583 5.583 23 Si 0.801 3.199 24 H -0.209 1.209 25 H -0.223 1.223 26 H -0.190 1.190 27 C -0.024 4.024 28 C -0.020 4.020 29 O -0.308 6.308 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.085 0.915 34 H 0.093 0.907 35 H 0.070 0.930 36 H 0.114 0.886 37 H 0.081 0.919 38 H 0.106 0.894 39 H 0.079 0.921 40 H 0.070 0.930 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.095 0.905 44 H 0.058 0.942 45 H 0.083 0.917 46 H 0.249 0.751 47 H 0.088 0.912 48 H 0.071 0.929 49 H 0.083 0.917 50 H 0.015 0.985 51 H 0.060 0.940 52 H 0.091 0.909 53 H 0.032 0.968 54 H 0.073 0.927 55 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -24.250 -1.258 8.188 25.626 hybrid contribution 1.694 0.511 -0.925 1.996 sum -22.557 -0.746 7.263 23.709 Atomic orbital electron populations 1.21876 0.93370 1.02577 1.02731 1.21856 0.98035 0.93298 1.03435 1.21421 0.88671 1.00124 1.01666 0.86731 1.21580 1.01063 0.98187 0.91805 1.21982 1.00254 0.95449 0.94515 1.22812 1.00761 0.96761 0.95374 1.22551 1.01399 0.96564 0.96163 1.22344 1.00239 0.95157 0.98012 1.22165 0.99110 0.98818 0.95585 1.21426 0.91913 0.76552 0.80507 1.90647 1.68855 1.47058 1.39075 1.45895 1.06470 1.59084 1.24832 1.21018 0.81195 0.99431 0.96405 1.22741 0.95419 0.83470 0.96576 0.91882 1.21057 0.90017 0.96597 0.88837 1.44306 1.50629 1.11262 1.27738 1.19546 1.06841 1.23068 0.90179 0.90876 1.26000 0.98288 1.02443 0.97844 1.70148 1.34914 1.36956 1.16271 0.85180 0.77396 0.78651 0.78690 1.20914 1.22259 1.18979 1.21837 0.94088 0.86665 0.99797 1.23080 0.94707 0.97118 0.87119 1.87789 1.77788 1.24043 1.41147 0.91369 0.91839 0.91881 0.91502 0.90715 0.93023 0.88632 0.91938 0.89387 0.92131 0.93009 0.90344 0.92052 0.90471 0.94241 0.91684 0.75086 0.91166 0.92894 0.91714 0.98489 0.93956 0.90910 0.96812 0.92736 0.86063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 9.12 71.98 0.66 -0.87 16 2 C -0.13 -1.95 4.79 30.60 0.15 -1.80 16 3 C -0.10 -1.79 2.53 -11.54 -0.03 -1.82 16 4 H 0.11 1.64 8.14 -2.39 -0.02 1.63 16 5 C -0.09 -1.64 3.98 30.59 0.12 -1.51 16 6 C -0.10 -2.24 2.33 -10.07 -0.02 -2.26 16 7 C -0.12 -2.02 4.53 31.67 0.14 -1.87 16 8 C -0.13 -2.10 6.91 31.88 0.22 -1.88 16 9 C -0.12 -1.94 6.83 31.66 0.22 -1.73 16 10 C -0.12 -2.47 6.42 31.31 0.20 -2.27 16 11 C 0.51 14.08 6.71 87.66 0.59 14.67 16 12 O -0.58 -20.81 13.67 -3.06 -0.04 -20.85 16 13 N -0.71 -19.55 5.32 -463.06 -2.46 -22.01 16 14 C 0.14 5.05 5.37 86.38 0.46 5.52 16 15 C 0.08 2.91 2.86 30.69 0.09 3.00 16 16 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 17 C 0.16 7.91 4.67 86.35 0.40 8.31 16 18 N -0.61 -30.91 3.04 -697.57 -2.12 -33.03 16 19 C -0.27 -14.46 9.64 84.03 0.81 -13.65 16 20 H 0.07 3.80 7.85 -2.91 -0.02 3.78 16 21 C -0.05 -2.79 5.07 84.86 0.43 -2.36 16 22 N -0.94 -55.78 11.06 21.65 0.24 -55.54 16 23 Si 0.97 44.42 29.57 68.60 2.03 46.45 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 26 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 27 C 0.10 4.11 6.73 86.35 0.58 4.69 16 28 C 0.06 1.81 6.98 72.08 0.50 2.32 16 29 O -0.39 -13.60 10.14 -148.98 -1.51 -15.12 16 30 H 0.07 0.63 4.58 -2.39 -0.01 0.62 16 31 H 0.06 0.56 8.14 -2.38 -0.02 0.54 16 32 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.07 1.01 7.47 -2.39 -0.02 0.99 16 34 H 0.07 1.32 4.25 -2.39 -0.01 1.31 16 35 H 0.05 1.10 7.87 -2.39 -0.02 1.08 16 36 H 0.10 1.25 5.95 -2.38 -0.01 1.24 16 37 H 0.06 1.87 5.22 -2.39 -0.01 1.86 16 38 H 0.09 1.13 5.30 -2.39 -0.01 1.12 16 39 H 0.06 1.10 6.14 -2.38 -0.01 1.09 16 40 H 0.05 0.96 8.14 -2.38 -0.02 0.94 16 41 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 43 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.06 1.25 7.54 -2.39 -0.02 1.23 16 46 H 0.41 9.31 7.73 -92.70 -0.72 8.59 16 47 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 48 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.06 3.54 6.25 -2.39 -0.01 3.53 16 50 H 0.00 -0.16 8.14 -2.38 -0.02 -0.18 16 51 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 52 H 0.07 2.75 7.96 -2.39 -0.02 2.73 16 53 H 0.01 0.59 8.14 -2.39 -0.02 0.57 16 54 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 55 H 0.12 2.94 8.14 -2.39 -0.02 2.92 16 Total: -1.00 -68.79 404.14 1.81 -66.98 By element: Atomic # 1 Polarization: 26.48 SS G_CDS: 0.16 Total: 26.63 kcal Atomic # 6 Polarization: 0.95 SS G_CDS: 5.52 Total: 6.47 kcal Atomic # 7 Polarization: -106.23 SS G_CDS: -4.34 Total: -110.58 kcal Atomic # 8 Polarization: -34.41 SS G_CDS: -1.55 Total: -35.96 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 2.03 Total: 46.45 kcal Total: -68.79 1.81 -66.98 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732385635.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.545 kcal (2) G-P(sol) polarization free energy of solvation -68.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.984 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds