Wall clock time and date at job start Tue Mar 31 2020 22:26:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52994 * 1
3 3 C 1.53002 * 109.47003 * 2 1
4 4 H 1.08999 * 109.52522 * 305.07993 * 3 2 1
5 5 C 1.53191 * 109.49707 * 65.16204 * 3 2 1
6 6 N 1.46927 * 108.77866 * 174.58683 * 5 3 2
7 7 C 1.34770 * 120.63067 * 126.41221 * 6 5 3
8 8 O 1.21281 * 120.00538 * 354.57679 * 7 6 5
9 9 C 1.50708 * 119.99748 * 174.57325 * 7 6 5
10 10 C 1.52999 * 110.43522 * 302.16594 * 9 7 6
11 11 O 1.42904 * 109.47121 * 305.49962 * 10 9 7
12 12 C 1.42902 * 113.99953 * 179.97438 * 11 10 9
13 13 C 1.54891 * 110.48424 * 179.48175 * 9 7 6
14 14 C 1.54892 * 102.74779 * 279.26640 * 13 9 7
15 15 C 1.54262 * 104.19428 * 322.05637 * 14 13 9
16 16 C 1.53874 * 106.59979 * 23.61409 * 15 14 13
17 17 C 1.46925 * 118.73547 * 306.39267 * 6 5 3
18 18 C 1.53190 * 108.77685 * 53.60917 * 17 6 5
19 19 C 1.53039 * 109.31256 * 305.35916 * 18 17 6
20 20 H 1.08997 * 109.45181 * 181.37807 * 19 18 17
21 21 N 1.46496 * 109.46233 * 301.34699 * 19 18 17
22 22 C 1.36932 * 120.00027 * 275.06240 * 21 19 18
23 23 H 1.07996 * 120.00218 * 0.02562 * 22 21 19
24 24 C 1.38814 * 119.99918 * 179.97438 * 22 21 19
25 25 N 1.31626 * 120.00076 * 180.02562 * 24 22 21
26 26 Si 1.86797 * 120.00137 * 0.02562 * 24 22 21
27 27 H 1.48507 * 109.46903 * 90.00016 * 26 24 22
28 28 H 1.48493 * 109.47272 * 330.00030 * 26 24 22
29 29 H 1.48503 * 109.47303 * 209.99393 * 26 24 22
30 30 H 1.09000 * 109.47107 * 299.99693 * 1 2 3
31 31 H 1.09000 * 109.47383 * 60.00009 * 1 2 3
32 32 H 1.09001 * 109.46882 * 179.97438 * 1 2 3
33 33 H 1.09000 * 109.47107 * 240.00307 * 2 1 3
34 34 H 1.09000 * 109.47383 * 119.99991 * 2 1 3
35 35 H 1.08998 * 109.59008 * 294.37791 * 5 3 2
36 36 H 1.09005 * 109.58701 * 54.65558 * 5 3 2
37 37 H 1.08995 * 109.46870 * 65.49923 * 10 9 7
38 38 H 1.08997 * 109.46969 * 185.50112 * 10 9 7
39 39 H 1.09000 * 109.47137 * 299.99994 * 12 11 10
40 40 H 1.08998 * 109.46820 * 60.00513 * 12 11 10
41 41 H 1.08993 * 109.46895 * 180.02562 * 12 11 10
42 42 H 1.09003 * 110.75402 * 37.58015 * 13 9 7
43 43 H 1.09001 * 110.75287 * 160.95053 * 13 9 7
44 44 H 1.09002 * 110.48571 * 203.37905 * 14 13 9
45 45 H 1.09000 * 110.59652 * 80.79179 * 14 13 9
46 46 H 1.08998 * 110.03573 * 264.32420 * 15 14 13
47 47 H 1.09003 * 110.07318 * 142.92190 * 15 14 13
48 48 H 1.09003 * 110.03008 * 240.71346 * 16 15 14
49 49 H 1.08997 * 110.07419 * 119.30590 * 16 15 14
50 50 H 1.09002 * 109.58536 * 173.39245 * 17 6 5
51 51 H 1.09004 * 109.59200 * 293.67570 * 17 6 5
52 52 H 1.09003 * 109.50060 * 185.41062 * 18 17 6
53 53 H 1.09003 * 109.49977 * 65.31403 * 18 17 6
54 54 H 0.97004 * 119.99747 * 95.06640 * 21 19 18
55 55 H 0.96997 * 120.00402 * 179.97438 * 25 24 22
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0399 1.4425 0.0000
4 1 1.6047 1.9828 -0.8407
5 6 1.6384 2.1268 1.3105
6 7 2.2449 3.4644 1.3508
7 6 1.4856 4.5564 1.5682
8 8 0.2791 4.4526 1.6349
9 6 2.1357 5.9065 1.7286
10 6 3.1346 5.8841 2.8874
11 8 2.4797 5.4261 4.0720
12 6 3.3289 5.3669 5.2198
13 6 1.0634 7.0011 1.9545
14 6 0.5636 7.2917 0.5176
15 6 1.8365 7.2081 -0.3498
16 6 2.8361 6.3273 0.4201
17 6 3.6951 3.5888 1.1499
18 6 4.0735 2.8883 -0.1588
19 6 3.5652 1.4451 -0.1257
20 1 3.8546 0.9372 -1.0457
21 7 4.1507 0.7476 1.0218
22 6 5.3885 0.1719 0.9143
23 1 5.9333 0.2324 -0.0162
24 6 5.9435 -0.4886 2.0018
25 7 7.1335 -1.0415 1.8988
26 14 5.0015 -0.5927 3.6116
27 1 4.1596 -1.8160 3.6142
28 1 4.1353 0.6047 3.7566
29 1 5.9609 -0.6497 4.7437
30 1 -0.3633 0.5138 0.8900
31 1 -0.3634 0.5138 -0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 1.8933 -0.5138 -0.8900
34 1 1.8933 -0.5138 0.8900
35 1 0.5532 2.2160 1.3586
36 1 1.9942 1.5364 2.1549
37 1 3.9578 5.2124 2.6444
38 1 3.5224 6.8894 3.0522
39 1 4.1560 4.6841 5.0250
40 1 3.7211 6.3613 5.4332
41 1 2.7575 5.0098 6.0765
42 1 0.2518 6.6242 2.5770
43 1 1.5086 7.8926 2.3964
44 1 0.1274 8.2889 0.4597
45 1 -0.1614 6.5404 0.2045
46 1 2.2535 8.2042 -0.4980
47 1 1.6037 6.7541 -1.3131
48 1 3.7382 6.8960 0.6457
49 1 3.0884 5.4454 -0.1686
50 1 3.9668 4.6428 1.0919
51 1 4.2208 3.1212 1.9824
52 1 5.1576 2.8896 -0.2719
53 1 3.6191 3.4149 -0.9980
54 1 3.6615 0.6935 1.8577
55 1 7.5215 -1.5027 2.6588
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001733196523.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:26:37
Heat of formation + Delta-G solvation = -91.729773 kcal
Electronic energy + Delta-G solvation = -33241.371445 eV
Core-core repulsion = 29277.576058 eV
Total energy + Delta-G solvation = -3963.795387 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.35 seconds
Orbital eigenvalues (eV)
-42.13021 -39.95543 -38.67167 -37.70025 -36.04136 -35.42114 -33.57040 -32.02457
-31.49522 -30.15042 -29.44040 -27.68492 -26.81890 -25.42346 -25.24452 -24.84776
-22.86737 -22.09444 -21.40750 -20.40112 -19.89835 -19.39002 -18.08878 -17.44446
-16.97572 -16.92416 -16.63427 -16.46293 -16.13296 -15.97229 -15.80444 -15.37949
-15.02619 -14.96968 -14.68872 -14.36068 -14.32669 -14.27012 -14.14368 -13.75194
-13.44379 -13.26747 -13.02515 -12.92200 -12.67752 -12.53396 -12.47752 -12.45033
-12.35550 -12.14084 -12.06145 -11.90545 -11.88521 -11.83685 -11.71614 -11.58373
-11.51931 -11.27896 -11.16007 -10.93061 -10.75551 -10.42479 -9.60855 -9.22813
-7.98904 -5.28833 1.33874 1.35911 1.41545 1.66141 2.00483 2.47400
2.69634 3.31601 3.34341 3.56489 3.60335 3.63680 3.76868 3.92800
3.95074 3.99025 4.13370 4.22289 4.26966 4.30666 4.36187 4.41679
4.43933 4.47828 4.50948 4.52000 4.55959 4.56650 4.64441 4.70546
4.75891 4.78986 4.80593 4.87034 4.92011 4.95341 5.01298 5.08218
5.09714 5.14041 5.17368 5.20788 5.25435 5.30067 5.34833 5.36753
5.46621 5.51596 5.64648 5.84138 6.14150 6.25495 6.48569 7.11878
7.20408 7.89159 8.07382 9.23040
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.011338 B = 0.004654 C = 0.004034
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2469.050165 B = 6014.957692 C = 6939.108093
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C -0.110 4.110
3 C -0.093 4.093
4 H 0.088 0.912
5 C 0.122 3.878
6 N -0.603 5.603
7 C 0.536 3.464
8 O -0.579 6.579
9 C -0.082 4.082
10 C 0.060 3.940
11 O -0.413 6.413
12 C 0.028 3.972
13 C -0.091 4.091
14 C -0.123 4.123
15 C -0.117 4.117
16 C -0.119 4.119
17 C 0.108 3.892
18 C -0.143 4.143
19 C 0.177 3.823
20 H 0.053 0.947
21 N -0.742 5.742
22 C -0.209 4.209
23 H 0.065 0.935
24 C -0.055 4.055
25 N -0.982 5.982
26 Si 0.934 3.066
27 H -0.285 1.285
28 H -0.263 1.263
29 H -0.299 1.299
30 H 0.048 0.952
31 H 0.062 0.938
32 H 0.061 0.939
33 H 0.066 0.934
34 H 0.046 0.954
35 H 0.084 0.916
36 H 0.043 0.957
37 H 0.061 0.939
38 H 0.089 0.911
39 H 0.036 0.964
40 H 0.065 0.935
41 H 0.088 0.912
42 H 0.051 0.949
43 H 0.094 0.906
44 H 0.083 0.917
45 H 0.044 0.956
46 H 0.091 0.909
47 H 0.063 0.937
48 H 0.105 0.895
49 H 0.074 0.926
50 H 0.113 0.887
51 H 0.049 0.951
52 H 0.069 0.931
53 H 0.080 0.920
54 H 0.360 0.640
55 H 0.254 0.746
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.621 19.215 -2.241 22.069
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C -0.148 4.148
3 C -0.113 4.113
4 H 0.107 0.893
5 C -0.001 4.001
6 N -0.334 5.334
7 C 0.326 3.674
8 O -0.459 6.459
9 C -0.085 4.085
10 C -0.016 4.016
11 O -0.332 6.332
12 C -0.068 4.068
13 C -0.129 4.129
14 C -0.161 4.161
15 C -0.155 4.155
16 C -0.157 4.157
17 C -0.014 4.014
18 C -0.183 4.183
19 C 0.069 3.931
20 H 0.071 0.929
21 N -0.385 5.385
22 C -0.340 4.340
23 H 0.083 0.917
24 C -0.246 4.246
25 N -0.634 5.634
26 Si 0.764 3.236
27 H -0.211 1.211
28 H -0.188 1.188
29 H -0.226 1.226
30 H 0.067 0.933
31 H 0.081 0.919
32 H 0.080 0.920
33 H 0.085 0.915
34 H 0.065 0.935
35 H 0.103 0.897
36 H 0.062 0.938
37 H 0.079 0.921
38 H 0.107 0.893
39 H 0.055 0.945
40 H 0.083 0.917
41 H 0.106 0.894
42 H 0.070 0.930
43 H 0.112 0.888
44 H 0.102 0.898
45 H 0.063 0.937
46 H 0.110 0.890
47 H 0.082 0.918
48 H 0.123 0.877
49 H 0.093 0.907
50 H 0.131 0.869
51 H 0.067 0.933
52 H 0.088 0.912
53 H 0.099 0.901
54 H 0.194 0.806
55 H 0.064 0.936
Dipole moment (debyes) X Y Z Total
from point charges -11.253 19.036 -2.302 22.233
hybrid contribution 0.241 -1.006 1.494 1.817
sum -11.012 18.030 -0.807 21.142
Atomic orbital electron populations
1.21786 0.94718 1.02007 1.01885 1.21402 0.96181 0.95156 1.02059
1.21693 0.95544 0.96600 0.97460 0.89338 1.21506 0.98841 0.82420
0.97302 1.48043 1.08696 1.06165 1.70498 1.20656 0.86472 0.86161
0.74135 1.90594 1.15865 1.86625 1.52809 1.21732 0.97505 0.92382
0.96857 1.23021 0.93868 1.00727 0.83963 1.87908 1.38374 1.87965
1.18956 1.22870 0.94780 1.01437 0.87763 1.22329 0.96503 0.96297
0.97777 1.22342 0.97743 1.01690 0.94328 1.22120 0.94472 1.00714
0.98156 1.22465 0.99705 1.01004 0.92491 1.22054 0.78935 1.02261
0.98156 1.22398 1.01642 0.97385 0.96891 1.20420 0.90883 0.91503
0.90267 0.92937 1.42820 1.18266 1.65856 1.11608 1.19013 0.92928
1.24437 0.97604 0.91692 1.25204 0.97369 1.01409 1.00647 1.69840
1.18298 1.43618 1.31640 0.85727 0.78126 0.78284 0.81448 1.21131
1.18827 1.22556 0.93289 0.91869 0.92007 0.91511 0.93524 0.89735
0.93849 0.92063 0.89340 0.94497 0.91663 0.89364 0.93031 0.88798
0.89822 0.93687 0.89042 0.91803 0.87666 0.90704 0.86911 0.93288
0.91247 0.90104 0.80605 0.93643
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.62 9.67 71.98 0.70 -2.93 16
2 C -0.11 -3.26 5.19 30.59 0.16 -3.10 16
3 C -0.09 -2.80 2.14 -10.71 -0.02 -2.82 16
4 H 0.09 2.42 8.14 -2.39 -0.02 2.40 16
5 C 0.12 3.98 5.04 86.36 0.43 4.42 16
6 N -0.60 -18.46 2.96 -818.90 -2.43 -20.88 16
7 C 0.54 16.54 5.82 87.66 0.51 17.05 16
8 O -0.58 -21.69 14.50 -3.03 -0.04 -21.73 16
9 C -0.08 -1.86 0.35 -51.85 -0.02 -1.87 16
10 C 0.06 1.30 4.38 71.98 0.32 1.61 16
11 O -0.41 -11.12 10.09 -148.98 -1.50 -12.62 16
12 C 0.03 0.57 11.01 113.37 1.25 1.82 16
13 C -0.09 -1.96 5.40 31.89 0.17 -1.79 16
14 C -0.12 -2.35 6.52 31.67 0.21 -2.15 16
15 C -0.12 -1.78 6.80 31.32 0.21 -1.57 16
16 C -0.12 -2.00 4.57 31.32 0.14 -1.85 16
17 C 0.11 3.08 3.70 86.36 0.32 3.40 16
18 C -0.14 -4.18 5.65 30.67 0.17 -4.01 16
19 C 0.18 6.12 2.53 45.02 0.11 6.23 16
20 H 0.05 1.91 8.08 -2.39 -0.02 1.89 16
21 N -0.74 -31.96 3.53 -322.82 -1.14 -33.10 16
22 C -0.21 -11.07 10.41 84.03 0.87 -10.20 16
23 H 0.07 3.76 8.06 -2.91 -0.02 3.73 16
24 C -0.05 -3.12 5.50 84.86 0.47 -2.65 16
25 N -0.98 -61.18 13.97 21.65 0.30 -60.88 16
26 Si 0.93 45.31 27.74 68.60 1.90 47.21 16
27 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16
28 H -0.26 -11.88 6.52 99.48 0.65 -11.23 16
29 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16
30 H 0.05 1.25 6.70 -2.39 -0.02 1.24 16
31 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16
32 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16
33 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16
34 H 0.05 1.59 7.70 -2.39 -0.02 1.57 16
35 H 0.08 2.83 5.72 -2.39 -0.01 2.82 16
36 H 0.04 1.58 6.65 -2.38 -0.02 1.56 16
37 H 0.06 1.35 5.15 -2.39 -0.01 1.34 16
38 H 0.09 1.35 8.07 -2.39 -0.02 1.33 16
39 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16
40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16
41 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16
42 H 0.05 1.43 7.42 -2.39 -0.02 1.41 16
43 H 0.09 1.54 8.01 -2.39 -0.02 1.53 16
44 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16
45 H 0.04 1.11 7.63 -2.39 -0.02 1.09 16
46 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16
47 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16
48 H 0.10 1.21 7.84 -2.39 -0.02 1.19 16
49 H 0.07 1.38 5.44 -2.39 -0.01 1.37 16
50 H 0.11 2.53 3.12 -2.39 -0.01 2.52 16
51 H 0.05 1.69 7.72 -2.39 -0.02 1.67 16
52 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16
53 H 0.08 1.95 7.73 -2.39 -0.02 1.94 16
54 H 0.36 15.78 3.81 -92.71 -0.35 15.43 16
55 H 0.25 15.31 8.31 -92.71 -0.77 14.54 16
Total: -1.00 -70.17 400.89 3.55 -66.62
By element:
Atomic # 1 Polarization: 35.33 SS G_CDS: 0.46 Total: 35.79 kcal
Atomic # 6 Polarization: -6.40 SS G_CDS: 6.01 Total: -0.40 kcal
Atomic # 7 Polarization: -111.60 SS G_CDS: -3.26 Total: -114.87 kcal
Atomic # 8 Polarization: -32.80 SS G_CDS: -1.55 Total: -34.35 kcal
Atomic # 14 Polarization: 45.31 SS G_CDS: 1.90 Total: 47.21 kcal
Total: -70.17 3.55 -66.62 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001733196523.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -25.113 kcal
(2) G-P(sol) polarization free energy of solvation -70.171 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.284 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.554 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.617 kcal
(6) G-S(sol) free energy of system = (1) + (5) -91.730 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.35 seconds