Wall clock time and date at job start Tue Mar 31 2020 23:56:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46755 * 2 1 4 4 H 1.08998 * 109.47379 * 304.99950 * 3 2 1 5 5 C 1.53008 * 109.46961 * 185.00581 * 3 2 1 6 6 O 1.42899 * 109.47032 * 65.00789 * 3 2 1 7 7 C 1.42897 * 113.99645 * 209.99481 * 6 3 2 8 8 C 1.50706 * 109.46997 * 179.97438 * 7 6 3 9 9 O 1.21279 * 119.99752 * 0.02562 * 8 7 6 10 10 N 1.34778 * 119.99905 * 180.02562 * 8 7 6 11 11 C 1.46929 * 120.62908 * 180.02562 * 10 8 7 12 12 C 1.53180 * 108.77671 * 233.63120 * 11 10 8 13 13 C 1.53049 * 109.31348 * 305.36538 * 12 11 10 14 14 C 1.52996 * 109.46102 * 181.38679 * 13 12 11 15 15 H 1.09002 * 110.64132 * 296.83311 * 14 13 12 16 16 C 1.55159 * 110.72242 * 59.97096 * 14 13 12 17 17 C 1.54908 * 101.58083 * 154.04102 * 16 14 13 18 18 N 1.47421 * 104.83305 * 322.99266 * 17 16 14 19 19 C 1.36942 * 125.64472 * 204.09023 * 18 17 16 20 20 H 1.08000 * 119.99381 * 168.12967 * 19 18 17 21 21 C 1.38804 * 120.00181 * 348.12742 * 19 18 17 22 22 N 1.31613 * 120.00573 * 325.96336 * 21 19 18 23 23 Si 1.86806 * 119.99822 * 145.95871 * 21 19 18 24 24 H 1.48494 * 109.47031 * 0.02562 * 23 21 19 25 25 H 1.48498 * 109.47105 * 120.00386 * 23 21 19 26 26 H 1.48499 * 109.47222 * 240.00274 * 23 21 19 27 27 C 1.47021 * 108.70481 * 24.35688 * 18 17 16 28 28 C 1.53040 * 109.52689 * 61.37214 * 13 12 11 29 29 C 1.46919 * 120.63236 * 0.02562 * 10 8 7 30 30 H 1.09006 * 109.46719 * 299.99271 * 1 2 3 31 31 H 1.08991 * 109.47527 * 59.99796 * 1 2 3 32 32 H 1.08998 * 109.46934 * 180.02562 * 1 2 3 33 33 H 1.09006 * 109.46719 * 240.00729 * 2 1 3 34 34 H 1.08991 * 109.47527 * 120.00204 * 2 1 3 35 35 H 1.09001 * 109.46777 * 300.00607 * 5 3 2 36 36 H 1.08996 * 109.46798 * 60.00132 * 5 3 2 37 37 H 1.08998 * 109.46830 * 180.02562 * 5 3 2 38 38 H 1.09008 * 109.46961 * 60.00360 * 7 6 3 39 39 H 1.08992 * 109.47850 * 300.00034 * 7 6 3 40 40 H 1.08998 * 109.58444 * 113.84090 * 11 10 8 41 41 H 1.09005 * 109.58497 * 353.42273 * 11 10 8 42 42 H 1.08999 * 109.50286 * 185.41508 * 12 11 10 43 43 H 1.08997 * 109.52819 * 65.32892 * 12 11 10 44 44 H 1.09004 * 109.45631 * 301.35547 * 13 12 11 45 45 H 1.08998 * 111.00172 * 35.96952 * 16 14 13 46 46 H 1.08997 * 111.00305 * 272.11668 * 16 14 13 47 47 H 1.09001 * 110.36366 * 204.14954 * 17 16 14 48 48 H 1.09001 * 110.45875 * 81.88065 * 17 16 14 49 49 H 0.97003 * 119.99786 * 354.24651 * 22 21 19 50 50 H 1.08994 * 109.88129 * 118.13016 * 27 18 17 51 51 H 1.08996 * 109.87975 * 239.29678 * 27 18 17 52 52 H 1.09000 * 109.49419 * 58.57796 * 28 13 12 53 53 H 1.08997 * 109.49631 * 178.68204 * 28 13 12 54 54 H 1.09001 * 109.58614 * 246.15725 * 29 10 8 55 55 H 1.09001 * 109.58967 * 6.44121 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 6 3.5648 1.4444 -0.1259 6 8 1.6620 2.0813 1.2211 7 6 1.4560 3.4902 1.1004 8 6 1.0628 4.0570 2.4403 9 8 0.9688 3.3264 3.4038 10 7 0.8156 5.3758 2.5679 11 6 0.4319 5.9431 3.8678 12 6 -0.8723 6.7282 3.6974 13 6 -0.6972 7.7656 2.5858 14 6 -1.9868 8.5750 2.4362 15 1 -2.8107 7.9316 2.1274 16 6 -2.3303 9.3099 3.7588 17 6 -3.1614 10.5102 3.2409 18 7 -2.5147 10.8984 1.9742 19 6 -2.5750 12.1375 1.3944 20 1 -1.9181 12.3816 0.5726 21 6 -3.4803 13.0797 1.8628 22 7 -4.6539 12.6954 2.3180 23 14 -3.0329 14.8933 1.8472 24 1 -1.6666 15.0613 1.2903 25 1 -4.0050 15.6358 1.0052 26 1 -3.0717 15.4247 3.2334 27 6 -1.7998 9.7331 1.4334 28 6 -0.3857 7.0544 1.2669 29 6 0.9248 6.2733 1.4099 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8899 35 1 3.9995 0.9053 0.7158 36 1 3.8530 0.9572 -1.0573 37 1 3.9281 2.4721 -0.1254 38 1 0.6617 3.6807 0.3785 39 1 2.3768 3.9644 0.7610 40 1 1.2172 6.6114 4.2209 41 1 0.2828 5.1386 4.5879 42 1 -1.1174 7.2338 4.6314 43 1 -1.6778 6.0434 3.4322 44 1 0.1244 8.4352 2.8403 45 1 -1.4258 9.6496 4.2632 46 1 -2.9268 8.6757 4.4146 47 1 -3.1236 11.3336 3.9541 48 1 -4.1941 10.2103 3.0633 49 1 -4.9197 11.7650 2.2495 50 1 -2.2177 9.4586 0.4648 51 1 -0.7396 9.9640 1.3300 52 1 -1.1954 6.3661 1.0247 53 1 -0.2842 7.7922 0.4710 54 1 1.7503 6.9685 1.5630 55 1 1.1034 5.6869 0.5086 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733265806.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:30 Heat of formation + Delta-G solvation = -99.047454 kcal Electronic energy + Delta-G solvation = -30300.362097 eV Core-core repulsion = 26336.249391 eV Total energy + Delta-G solvation = -3964.112706 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.41864 -40.05082 -39.19622 -37.98371 -35.43781 -34.76062 -33.60297 -32.34512 -31.06263 -30.76657 -29.58828 -28.69680 -26.55092 -25.17020 -24.58782 -24.09793 -22.21445 -21.97080 -21.89178 -20.89964 -20.11621 -19.52359 -18.41838 -17.82651 -17.17988 -16.85913 -16.47509 -16.40861 -15.69632 -15.67547 -15.46035 -15.23018 -14.90206 -14.88196 -14.73263 -14.53078 -14.40618 -14.20833 -13.97336 -13.72824 -13.61614 -13.33418 -13.19058 -12.96486 -12.66391 -12.61135 -12.57343 -12.44235 -12.30437 -12.26901 -12.17723 -11.92580 -11.88290 -11.84166 -11.65299 -11.47636 -11.44454 -11.30223 -11.16903 -10.73881 -10.59475 -10.44562 -9.69559 -9.01927 -8.39711 -5.27283 1.51513 1.56800 1.64272 1.71177 1.81495 2.63936 2.83678 3.13042 3.47262 3.54432 3.61717 3.70564 3.83299 3.90121 4.00830 4.04948 4.11253 4.13660 4.19400 4.24521 4.26608 4.35703 4.40597 4.41479 4.43566 4.52336 4.55245 4.66829 4.71841 4.72539 4.79055 4.82516 4.85879 4.89800 4.92586 4.95917 5.04558 5.05146 5.08129 5.09566 5.17812 5.19988 5.24020 5.29608 5.30180 5.36023 5.42324 5.53385 5.57018 5.68802 6.15619 6.29428 6.38095 6.89802 7.10736 7.72266 8.32216 8.94862 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023965 B = 0.001938 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1168.114317 B =14446.463209 C =14708.139628 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C 0.077 3.923 4 H 0.080 0.920 5 C -0.174 4.174 6 O -0.388 6.388 7 C 0.046 3.954 8 C 0.509 3.491 9 O -0.577 6.577 10 N -0.606 5.606 11 C 0.114 3.886 12 C -0.119 4.119 13 C -0.064 4.064 14 C -0.077 4.077 15 H 0.069 0.931 16 C -0.113 4.113 17 C 0.143 3.857 18 N -0.628 5.628 19 C -0.350 4.350 20 H 0.061 0.939 21 C -0.080 4.080 22 N -0.939 5.939 23 Si 1.114 2.886 24 H -0.271 1.271 25 H -0.291 1.291 26 H -0.288 1.288 27 C 0.140 3.860 28 C -0.129 4.129 29 C 0.107 3.893 30 H 0.037 0.963 31 H 0.061 0.939 32 H 0.060 0.940 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.051 0.949 36 H 0.085 0.915 37 H 0.061 0.939 38 H 0.102 0.898 39 H 0.105 0.895 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.058 0.942 44 H 0.077 0.923 45 H 0.074 0.926 46 H 0.085 0.915 47 H 0.015 0.985 48 H -0.004 1.004 49 H 0.253 0.747 50 H 0.010 0.990 51 H 0.035 0.965 52 H 0.065 0.935 53 H 0.083 0.917 54 H 0.088 0.912 55 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.809 -22.852 -5.871 28.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C 0.020 3.980 4 H 0.098 0.902 5 C -0.231 4.231 6 O -0.307 6.307 7 C -0.033 4.033 8 C 0.298 3.702 9 O -0.456 6.456 10 N -0.340 5.340 11 C -0.008 4.008 12 C -0.158 4.158 13 C -0.083 4.083 14 C -0.096 4.096 15 H 0.087 0.913 16 C -0.151 4.151 17 C 0.018 3.982 18 N -0.355 5.355 19 C -0.478 4.478 20 H 0.079 0.921 21 C -0.276 4.276 22 N -0.581 5.581 23 Si 0.938 3.062 24 H -0.196 1.196 25 H -0.218 1.218 26 H -0.215 1.215 27 C 0.015 3.985 28 C -0.167 4.167 29 C -0.015 4.015 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.079 0.921 33 H 0.116 0.884 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.104 0.896 37 H 0.080 0.920 38 H 0.119 0.881 39 H 0.123 0.877 40 H 0.100 0.900 41 H 0.093 0.907 42 H 0.102 0.898 43 H 0.077 0.923 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.104 0.896 47 H 0.034 0.966 48 H 0.014 0.986 49 H 0.062 0.938 50 H 0.028 0.972 51 H 0.053 0.947 52 H 0.084 0.916 53 H 0.102 0.898 54 H 0.107 0.893 55 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 16.264 -21.757 -4.835 27.591 hybrid contribution -0.215 -1.049 -0.535 1.197 sum 16.049 -22.806 -5.370 28.399 Atomic orbital electron populations 1.21726 0.95756 1.01938 1.01487 1.21670 0.96311 0.94708 1.03114 1.22456 0.95168 0.94271 0.86154 0.90153 1.22298 0.95074 1.02799 1.02961 1.88032 1.89788 1.18845 1.34063 1.22390 1.03261 0.83683 0.93962 1.20869 0.76563 0.81838 0.90898 1.90689 1.53429 1.59356 1.42136 1.48191 1.67716 1.06629 1.11504 1.21598 0.96867 0.97547 0.84792 1.21886 0.96934 0.97246 0.99688 1.21030 0.95902 0.95744 0.95629 1.22075 0.98322 0.94752 0.94446 0.91271 1.22748 0.99806 0.95525 0.97034 1.21446 0.93946 0.95309 0.87512 1.44959 1.60297 1.08392 1.21885 1.19989 1.18687 0.89978 1.19193 0.92089 1.27057 0.92060 1.08494 1.00001 1.70856 1.17878 1.18473 1.50880 0.82914 0.75647 0.71024 0.76608 1.19606 1.21847 1.21486 1.21496 0.95275 0.86747 0.94962 1.21972 0.97702 0.99487 0.97513 1.22024 0.98170 0.93245 0.88049 0.94365 0.91958 0.92070 0.88389 0.92432 0.93003 0.89609 0.91978 0.88055 0.87728 0.90007 0.90668 0.89816 0.92293 0.90484 0.90687 0.89634 0.96637 0.98590 0.93757 0.97224 0.94718 0.91623 0.89832 0.89332 0.87227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.81 71.98 0.71 -1.38 16 2 C -0.12 -1.49 5.64 30.60 0.17 -1.32 16 3 C 0.08 0.97 2.72 30.60 0.08 1.05 16 4 H 0.08 0.70 7.79 -2.39 -0.02 0.69 16 5 C -0.17 -1.76 9.53 71.98 0.69 -1.08 16 6 O -0.39 -7.84 9.06 -129.94 -1.18 -9.01 16 7 C 0.05 0.71 4.57 71.24 0.33 1.03 16 8 C 0.51 11.59 7.78 87.66 0.68 12.27 16 9 O -0.58 -18.96 15.91 16.01 0.25 -18.70 16 10 N -0.61 -11.20 2.97 -818.84 -2.43 -13.63 16 11 C 0.11 2.25 6.43 86.36 0.56 2.80 16 12 C -0.12 -2.38 5.16 30.67 0.16 -2.22 16 13 C -0.06 -1.37 1.57 -10.77 -0.02 -1.39 16 14 C -0.08 -2.31 2.47 -9.60 -0.02 -2.33 16 15 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 16 C -0.11 -3.77 5.37 31.99 0.17 -3.60 16 17 C 0.14 6.83 5.34 86.86 0.46 7.29 16 18 N -0.63 -32.21 3.33 -692.00 -2.30 -34.51 16 19 C -0.35 -20.15 9.97 84.03 0.84 -19.31 16 20 H 0.06 3.48 8.02 -2.91 -0.02 3.46 16 21 C -0.08 -4.67 4.95 84.86 0.42 -4.25 16 22 N -0.94 -58.83 12.87 21.65 0.28 -58.55 16 23 Si 1.11 51.85 30.03 68.60 2.06 53.91 16 24 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 25 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 26 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 27 C 0.14 5.49 5.99 86.73 0.52 6.01 16 28 C -0.13 -2.19 5.23 30.69 0.16 -2.03 16 29 C 0.11 1.35 6.34 86.38 0.55 1.90 16 30 H 0.04 0.72 7.82 -2.38 -0.02 0.70 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 34 H 0.06 0.87 8.14 -2.39 -0.02 0.86 16 35 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 36 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.06 0.56 7.87 -2.39 -0.02 0.54 16 38 H 0.10 1.07 7.64 -2.38 -0.02 1.05 16 39 H 0.11 1.00 7.67 -2.39 -0.02 0.98 16 40 H 0.08 1.40 8.14 -2.39 -0.02 1.39 16 41 H 0.07 1.77 7.01 -2.38 -0.02 1.75 16 42 H 0.08 1.62 7.19 -2.39 -0.02 1.60 16 43 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.08 1.67 8.08 -2.39 -0.02 1.65 16 45 H 0.07 2.37 8.05 -2.39 -0.02 2.35 16 46 H 0.09 2.45 8.07 -2.39 -0.02 2.44 16 47 H 0.02 0.81 7.82 -2.39 -0.02 0.80 16 48 H 0.00 -0.19 7.02 -2.39 -0.02 -0.21 16 49 H 0.25 16.18 6.45 -92.71 -0.60 15.58 16 50 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 51 H 0.03 1.30 7.77 -2.39 -0.02 1.28 16 52 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 53 H 0.08 1.45 7.45 -2.39 -0.02 1.43 16 54 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 55 H 0.11 0.79 5.93 -2.39 -0.01 0.77 16 Total: -1.00 -78.97 419.69 4.13 -74.84 By element: Atomic # 1 Polarization: 11.22 SS G_CDS: 1.00 Total: 12.22 kcal Atomic # 6 Polarization: -13.00 SS G_CDS: 6.45 Total: -6.55 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -4.46 Total: -106.70 kcal Atomic # 8 Polarization: -26.80 SS G_CDS: -0.92 Total: -27.72 kcal Atomic # 14 Polarization: 51.85 SS G_CDS: 2.06 Total: 53.91 kcal Total: -78.97 4.13 -74.84 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733265806.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.203 kcal (2) G-P(sol) polarization free energy of solvation -78.972 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds