Wall clock time and date at job start Tue Mar 31 2020 23:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47360 * 2 1 4 4 H 1.09004 * 109.46995 * 55.00350 * 3 2 1 5 5 C 1.53002 * 109.47086 * 174.99932 * 3 2 1 6 6 O 1.42898 * 109.47214 * 295.00506 * 3 2 1 7 7 C 1.42906 * 113.99828 * 150.00036 * 6 3 2 8 8 C 1.50706 * 109.46702 * 179.97438 * 7 6 3 9 9 O 1.21279 * 120.00072 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99762 * 179.97438 * 8 7 6 11 11 C 1.46933 * 120.62902 * 359.72617 * 10 8 7 12 12 C 1.53625 * 108.54354 * 126.36782 * 11 10 8 13 13 C 1.53042 * 109.24315 * 54.85108 * 12 11 10 14 14 C 1.52999 * 109.45778 * 178.49024 * 13 12 11 15 15 H 1.09002 * 110.88861 * 59.36715 * 14 13 12 16 16 C 1.55153 * 111.00413 * 183.24959 * 14 13 12 17 17 C 1.54323 * 102.94479 * 153.57771 * 16 14 13 18 18 N 1.47021 * 107.26635 * 337.80499 * 17 16 14 19 19 C 1.36942 * 125.64620 * 178.90074 * 18 17 16 20 20 H 1.07991 * 120.00097 * 180.02562 * 19 18 17 21 21 C 1.38818 * 119.99781 * 0.02890 * 19 18 17 22 22 N 1.31617 * 120.00267 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99799 * 180.02562 * 21 19 18 24 24 H 1.48492 * 109.47231 * 59.99809 * 23 21 19 25 25 H 1.48498 * 109.46912 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.46746 * 299.99297 * 23 21 19 27 27 C 1.47461 * 108.72729 * 358.97770 * 18 17 16 28 28 C 1.53036 * 109.53740 * 298.51425 * 13 12 11 29 29 C 1.46923 * 120.63273 * 179.97438 * 10 8 7 30 30 H 1.09002 * 109.47635 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46986 * 300.00116 * 1 2 3 32 32 H 1.09002 * 109.47009 * 59.99369 * 1 2 3 33 33 H 1.09005 * 109.46754 * 240.00317 * 2 1 3 34 34 H 1.09002 * 109.47009 * 120.00631 * 2 1 3 35 35 H 1.08995 * 109.47093 * 300.00262 * 5 3 2 36 36 H 1.08996 * 109.47002 * 60.00646 * 5 3 2 37 37 H 1.08997 * 109.46936 * 180.02562 * 5 3 2 38 38 H 1.09000 * 109.46890 * 59.99811 * 7 6 3 39 39 H 1.09000 * 109.47141 * 299.99454 * 7 6 3 40 40 H 1.09005 * 109.58222 * 246.19866 * 11 10 8 41 41 H 1.08997 * 109.58563 * 6.61805 * 11 10 8 42 42 H 1.09003 * 109.63112 * 294.86217 * 12 11 10 43 43 H 1.09002 * 109.45456 * 174.73848 * 12 11 10 44 44 H 1.08999 * 109.44445 * 58.52789 * 13 12 11 45 45 H 1.09002 * 110.72198 * 271.94407 * 16 14 13 46 46 H 1.09000 * 110.72210 * 35.21186 * 16 14 13 47 47 H 1.08997 * 109.88416 * 97.22541 * 17 16 14 48 48 H 1.09003 * 109.88140 * 218.39249 * 17 16 14 49 49 H 0.96998 * 120.00597 * 180.02562 * 22 21 19 50 50 H 1.09000 * 110.34921 * 265.24986 * 27 18 17 51 51 H 1.09004 * 110.40853 * 142.91236 * 27 18 17 52 52 H 1.09003 * 109.49703 * 301.40970 * 28 13 12 53 53 H 1.09003 * 109.51979 * 181.33539 * 28 13 12 54 54 H 1.09007 * 109.58345 * 353.37889 * 29 10 8 55 55 H 1.09004 * 109.58281 * 113.65687 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9815 0.8419 5 6 3.5649 1.4442 0.1257 6 8 1.6619 2.0814 -1.2210 7 6 1.4560 3.4904 -1.1001 8 6 1.0638 4.0574 -2.4402 9 8 0.9704 3.3270 -3.4039 10 7 0.8169 5.3762 -2.5677 11 6 0.9201 6.2727 -1.4081 12 6 1.8658 7.4289 -1.7670 13 6 1.3687 8.1091 -3.0446 14 6 2.2859 9.2852 -3.3859 15 1 3.3118 8.9479 -3.5337 16 6 1.7675 10.0515 -4.6314 17 6 2.3263 11.4743 -4.4192 18 7 2.5983 11.6265 -2.9824 19 6 3.1237 12.7402 -2.3832 20 1 3.2869 12.7528 -1.3157 21 6 3.4463 13.8528 -3.1479 22 7 3.2479 13.8373 -4.4490 23 14 4.1636 15.3718 -2.3307 24 1 5.4390 15.0164 -1.6582 25 1 4.4197 16.4125 -3.3584 26 1 3.2027 15.8936 -1.3258 27 6 2.2137 10.3809 -2.2932 28 6 1.3795 7.1028 -4.1976 29 6 0.4342 5.9440 -3.8676 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 3.8532 0.9569 1.0571 36 1 3.9994 0.9053 -0.7161 37 1 3.9282 2.4719 0.1262 38 1 2.3770 3.9644 -0.7608 39 1 0.6619 3.6809 -0.3781 40 1 -0.0660 6.6665 -1.1619 41 1 1.3195 5.7231 -0.5558 42 1 2.8721 7.0422 -1.9286 43 1 1.8806 8.1523 -0.9517 44 1 0.3531 8.4735 -2.8901 45 1 2.1653 9.6135 -5.5469 46 1 0.6778 10.0640 -4.6506 47 1 3.2486 11.5988 -4.9864 48 1 1.5904 12.2128 -4.7374 49 1 3.4737 14.6146 -4.9834 50 1 1.1991 10.4613 -1.9030 51 1 2.9143 10.1602 -1.4878 52 1 2.3903 6.7193 -4.3363 53 1 1.0479 7.5937 -5.1126 54 1 0.5130 5.1774 -4.6386 55 1 -0.5917 6.3092 -3.8190 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733265807.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:56:34 Heat of formation + Delta-G solvation = -94.644282 kcal Electronic energy + Delta-G solvation = -30234.648926 eV Core-core repulsion = 26270.727156 eV Total energy + Delta-G solvation = -3963.921770 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.36056 -39.91291 -39.12767 -37.85646 -35.23341 -34.73354 -33.51292 -32.26622 -31.08862 -30.75576 -29.41406 -28.66081 -26.72341 -25.07754 -24.55895 -24.06755 -22.14794 -21.94458 -21.71988 -20.85534 -20.06749 -18.82144 -18.37116 -17.82021 -17.12611 -16.86838 -16.66961 -16.19461 -15.79097 -15.70486 -15.37009 -15.15986 -14.81696 -14.74777 -14.54324 -14.26662 -14.09622 -13.97961 -13.82737 -13.79901 -13.59209 -13.38208 -13.20153 -12.94257 -12.89271 -12.69106 -12.54985 -12.32933 -12.25082 -12.18464 -12.14083 -12.02086 -11.90207 -11.79517 -11.60389 -11.45567 -11.32366 -11.14466 -11.02335 -10.69839 -10.67935 -10.57379 -9.65021 -8.86146 -7.82954 -5.18121 1.45311 1.48912 1.54645 1.55156 1.74920 2.50910 2.86742 3.34720 3.51424 3.66386 3.72203 3.83828 3.90694 3.96838 4.06930 4.12339 4.16324 4.21219 4.22992 4.29284 4.33212 4.44249 4.44818 4.48502 4.50113 4.63937 4.68358 4.73711 4.75268 4.82167 4.85087 4.87359 4.93972 4.97677 5.03797 5.07089 5.10310 5.11827 5.13303 5.22293 5.23606 5.29205 5.30931 5.44084 5.44736 5.48158 5.57888 5.63324 5.72206 5.81126 6.18363 6.22625 6.41741 7.12493 7.14148 7.81927 8.46661 9.27338 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.023350 B = 0.001947 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1198.854523 B =14375.740078 C =15132.090357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.078 3.922 4 H 0.083 0.917 5 C -0.176 4.176 6 O -0.388 6.388 7 C 0.046 3.954 8 C 0.509 3.491 9 O -0.578 6.578 10 N -0.606 5.606 11 C 0.106 3.894 12 C -0.128 4.128 13 C -0.064 4.064 14 C -0.079 4.079 15 H 0.062 0.938 16 C -0.124 4.124 17 C 0.183 3.817 18 N -0.631 5.631 19 C -0.240 4.240 20 H 0.084 0.916 21 C -0.072 4.072 22 N -0.954 5.954 23 Si 0.979 3.021 24 H -0.276 1.276 25 H -0.297 1.297 26 H -0.275 1.275 27 C 0.139 3.861 28 C -0.120 4.120 29 C 0.115 3.885 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.038 0.962 33 H 0.055 0.945 34 H 0.097 0.903 35 H 0.085 0.915 36 H 0.049 0.951 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.062 0.938 43 H 0.088 0.912 44 H 0.080 0.920 45 H 0.072 0.928 46 H 0.072 0.928 47 H 0.003 0.997 48 H 0.001 0.999 49 H 0.245 0.755 50 H 0.028 0.972 51 H 0.042 0.958 52 H 0.054 0.946 53 H 0.081 0.919 54 H 0.072 0.928 55 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.006 -25.618 12.423 29.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C 0.021 3.979 4 H 0.101 0.899 5 C -0.233 4.233 6 O -0.308 6.308 7 C -0.033 4.033 8 C 0.297 3.703 9 O -0.458 6.458 10 N -0.340 5.340 11 C -0.015 4.015 12 C -0.166 4.166 13 C -0.083 4.083 14 C -0.098 4.098 15 H 0.081 0.919 16 C -0.162 4.162 17 C 0.058 3.942 18 N -0.358 5.358 19 C -0.370 4.370 20 H 0.102 0.898 21 C -0.265 4.265 22 N -0.603 5.603 23 Si 0.807 3.193 24 H -0.202 1.202 25 H -0.223 1.223 26 H -0.201 1.201 27 C 0.014 3.986 28 C -0.158 4.158 29 C -0.007 4.007 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.104 0.896 36 H 0.068 0.932 37 H 0.078 0.922 38 H 0.118 0.882 39 H 0.126 0.874 40 H 0.110 0.890 41 H 0.127 0.873 42 H 0.081 0.919 43 H 0.106 0.894 44 H 0.099 0.901 45 H 0.090 0.910 46 H 0.091 0.909 47 H 0.021 0.979 48 H 0.019 0.981 49 H 0.054 0.946 50 H 0.046 0.954 51 H 0.060 0.940 52 H 0.073 0.927 53 H 0.099 0.901 54 H 0.091 0.909 55 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.007 -25.911 11.708 29.061 hybrid contribution 0.694 1.568 -0.211 1.728 sum -5.313 -24.343 11.497 27.441 Atomic orbital electron populations 1.21718 0.95486 1.01963 1.01610 1.21670 0.96554 0.94602 1.03027 1.22446 0.94910 0.94358 0.86231 0.89883 1.22311 0.95433 1.02667 1.02905 1.88034 1.89754 1.18873 1.34114 1.22397 1.03254 0.83580 0.94051 1.20883 0.76449 0.81988 0.90931 1.90687 1.53435 1.59519 1.42136 1.48205 1.67837 1.06525 1.11476 1.22141 1.01334 0.90884 0.87183 1.22046 0.99186 0.97469 0.97943 1.21003 0.99144 0.93073 0.95059 1.22222 0.98890 0.93953 0.94732 0.91933 1.22761 1.00357 0.94856 0.98259 1.20898 0.95934 0.92795 0.84616 1.44858 1.74148 1.12704 1.04063 1.19463 1.33488 0.91456 0.92549 0.89808 1.25700 1.02922 1.01504 0.96374 1.70207 1.54938 1.29898 1.05293 0.85145 0.78496 0.78742 0.76926 1.20234 1.22302 1.20141 1.21781 0.97111 0.85109 0.94565 1.21869 0.99603 0.95274 0.99067 1.21583 0.98738 0.95553 0.84875 0.92087 0.91744 0.94250 0.92615 0.88439 0.89574 0.93177 0.92215 0.88240 0.87438 0.89042 0.87276 0.91940 0.89393 0.90118 0.90952 0.90937 0.97872 0.98086 0.94601 0.95429 0.94006 0.92707 0.90054 0.90914 0.89832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.81 71.98 0.71 -1.19 16 2 C -0.12 -1.47 5.64 30.59 0.17 -1.29 16 3 C 0.08 0.99 2.72 30.59 0.08 1.08 16 4 H 0.08 0.69 7.79 -2.39 -0.02 0.67 16 5 C -0.18 -1.99 9.53 71.98 0.69 -1.30 16 6 O -0.39 -7.92 9.06 -129.94 -1.18 -9.10 16 7 C 0.05 0.71 4.57 71.24 0.33 1.04 16 8 C 0.51 11.71 7.78 87.66 0.68 12.39 16 9 O -0.58 -19.27 15.91 16.01 0.25 -19.01 16 10 N -0.61 -11.31 2.97 -818.12 -2.43 -13.73 16 11 C 0.11 1.31 6.37 86.51 0.55 1.86 16 12 C -0.13 -2.16 5.23 30.82 0.16 -2.00 16 13 C -0.06 -1.37 1.65 -10.77 -0.02 -1.39 16 14 C -0.08 -2.42 2.56 -9.40 -0.02 -2.44 16 15 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 16 C -0.12 -4.39 5.42 31.78 0.17 -4.21 16 17 C 0.18 9.16 5.37 86.73 0.47 9.63 16 18 N -0.63 -32.39 3.40 -691.89 -2.35 -34.74 16 19 C -0.24 -13.52 10.28 84.03 0.86 -12.66 16 20 H 0.08 4.44 7.83 -2.92 -0.02 4.42 16 21 C -0.07 -4.18 5.49 84.86 0.47 -3.72 16 22 N -0.95 -58.61 10.31 21.65 0.22 -58.39 16 23 Si 0.98 46.04 29.55 68.60 2.03 48.07 16 24 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 25 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 26 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 27 C 0.14 5.27 5.80 86.85 0.50 5.78 16 28 C -0.12 -2.50 5.20 30.65 0.16 -2.34 16 29 C 0.11 2.30 6.43 86.35 0.55 2.86 16 30 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.04 0.69 7.82 -2.39 -0.02 0.67 16 33 H 0.06 0.85 8.14 -2.38 -0.02 0.84 16 34 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 37 H 0.06 0.65 7.87 -2.39 -0.02 0.63 16 38 H 0.10 1.09 7.43 -2.39 -0.02 1.07 16 39 H 0.11 0.98 7.87 -2.39 -0.02 0.96 16 40 H 0.09 0.90 8.14 -2.38 -0.02 0.88 16 41 H 0.11 0.75 5.93 -2.39 -0.01 0.73 16 42 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 43 H 0.09 1.43 7.32 -2.39 -0.02 1.41 16 44 H 0.08 1.67 8.13 -2.39 -0.02 1.65 16 45 H 0.07 2.34 8.09 -2.39 -0.02 2.32 16 46 H 0.07 2.33 8.04 -2.39 -0.02 2.31 16 47 H 0.00 0.17 7.38 -2.39 -0.02 0.15 16 48 H 0.00 0.05 7.51 -2.39 -0.02 0.03 16 49 H 0.24 14.68 8.31 -92.71 -0.77 13.91 16 50 H 0.03 1.01 8.03 -2.39 -0.02 0.99 16 51 H 0.04 1.52 8.02 -2.38 -0.02 1.50 16 52 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 53 H 0.08 1.68 7.32 -2.39 -0.02 1.66 16 54 H 0.07 1.76 7.01 -2.38 -0.02 1.74 16 55 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 Total: -1.00 -77.92 419.62 3.89 -74.03 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: 0.82 Total: 10.80 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 6.51 Total: 2.08 kcal Atomic # 7 Polarization: -102.31 SS G_CDS: -4.55 Total: -106.86 kcal Atomic # 8 Polarization: -27.19 SS G_CDS: -0.92 Total: -28.11 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -77.92 3.89 -74.03 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733265807.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.610 kcal (2) G-P(sol) polarization free energy of solvation -77.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.644 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds