Wall clock time and date at job start Tue Mar 31 2020 22:37:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47063 * 2 1 4 4 H 1.09008 * 109.46947 * 177.76906 * 3 2 1 5 5 C 1.52998 * 109.46996 * 297.76693 * 3 2 1 6 6 C 1.52998 * 109.47455 * 295.28973 * 5 3 2 7 7 C 1.54260 * 110.03217 * 292.34045 * 6 5 3 8 8 C 1.54964 * 104.16010 * 217.13797 * 7 6 5 9 9 C 1.54886 * 102.77861 * 37.88929 * 8 7 6 10 10 C 1.53875 * 110.03242 * 175.12252 * 6 5 3 11 11 C 1.50694 * 109.47126 * 57.77520 * 3 2 1 12 12 O 1.21284 * 119.99727 * 240.00169 * 11 3 2 13 13 N 1.34777 * 120.00860 * 59.99569 * 11 3 2 14 14 C 1.46499 * 120.00361 * 180.02562 * 13 11 3 15 15 C 1.52997 * 109.46904 * 180.02562 * 14 13 11 16 16 H 1.09008 * 109.67915 * 301.13213 * 15 14 13 17 17 C 1.53294 * 109.67893 * 180.61803 * 15 14 13 18 18 O 1.42971 * 109.22310 * 187.97039 * 17 15 14 19 19 C 1.42965 * 114.16145 * 62.57699 * 18 17 15 20 20 C 1.53288 * 109.22531 * 297.42182 * 19 18 17 21 21 N 1.47151 * 108.38859 * 52.30536 * 20 19 18 22 22 C 1.36937 * 120.98453 * 129.48490 * 21 20 19 23 23 H 1.07999 * 119.99822 * 210.38870 * 22 21 20 24 24 C 1.38814 * 119.99893 * 30.38933 * 22 21 20 25 25 N 1.31613 * 119.99755 * 12.89924 * 24 22 21 26 26 Si 1.86801 * 119.99758 * 192.89487 * 24 22 21 27 27 H 1.48500 * 109.46904 * 60.00287 * 26 24 22 28 28 H 1.48498 * 109.46980 * 180.02562 * 26 24 22 29 29 H 1.48499 * 109.47256 * 300.00275 * 26 24 22 30 30 H 1.08999 * 109.46929 * 302.40292 * 1 2 3 31 31 H 1.08992 * 109.46967 * 62.40655 * 1 2 3 32 32 H 1.09001 * 109.46945 * 182.40203 * 1 2 3 33 33 H 1.09001 * 109.46971 * 239.99708 * 2 1 3 34 34 H 1.09002 * 109.47168 * 120.00197 * 2 1 3 35 35 H 1.09005 * 109.46560 * 55.29267 * 5 3 2 36 36 H 1.09000 * 109.46668 * 175.28512 * 5 3 2 37 37 H 1.09004 * 110.01651 * 53.73085 * 6 5 3 38 38 H 1.09007 * 110.48733 * 335.78485 * 7 6 5 39 39 H 1.09007 * 110.48870 * 98.42654 * 7 6 5 40 40 H 1.09004 * 110.71581 * 279.56975 * 8 7 6 41 41 H 1.09001 * 110.92332 * 156.29828 * 8 7 6 42 42 H 1.09004 * 110.48553 * 203.40980 * 9 8 7 43 43 H 1.08998 * 110.48737 * 80.76443 * 9 8 7 44 44 H 1.08996 * 110.03535 * 238.56856 * 10 6 5 45 45 H 1.09008 * 110.03160 * 359.97438 * 10 6 5 46 46 H 0.97000 * 119.99308 * 0.02562 * 13 11 3 47 47 H 1.09000 * 109.47124 * 300.00234 * 14 13 11 48 48 H 1.08992 * 109.46952 * 60.00374 * 14 13 11 49 49 H 1.08993 * 109.51532 * 307.89543 * 17 15 14 50 50 H 1.09003 * 109.51633 * 68.00069 * 17 15 14 51 51 H 1.09004 * 109.50993 * 57.35086 * 19 18 17 52 52 H 1.09004 * 109.50779 * 177.49357 * 19 18 17 53 53 H 1.09000 * 109.67912 * 172.02929 * 20 19 18 54 54 H 1.08999 * 109.68411 * 292.57811 * 20 19 18 55 55 H 0.97007 * 119.99681 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1294 1.4427 0.0400 5 6 1.5764 2.1473 -1.2764 6 6 2.2260 1.4818 -2.4913 7 6 3.7462 1.7437 -2.4874 8 6 4.1016 1.9359 -3.9834 9 6 2.8804 2.7177 -4.5279 10 6 1.6756 2.1003 -3.7882 11 6 1.4932 2.1686 1.2019 12 8 0.8006 3.1530 1.0524 13 7 1.7735 1.7242 2.4431 14 6 1.2413 2.4299 3.6114 15 6 1.7056 1.7254 4.8877 16 1 1.3617 0.6910 4.8819 17 6 1.1386 2.4511 6.1133 18 8 1.7239 1.9034 7.2971 19 6 3.1407 2.0746 7.3826 20 6 3.8101 1.3297 6.2221 21 7 3.1746 1.7597 4.9664 22 6 3.9280 2.1789 3.9025 23 1 3.5332 2.9151 3.2181 24 6 5.1990 1.6575 3.7039 25 7 5.5845 0.5908 4.3716 26 14 6.3623 2.4698 2.4888 27 1 6.6112 3.8735 2.9046 28 1 7.6472 1.7260 2.4607 29 1 5.7528 2.4554 1.1347 30 1 -0.3633 0.5507 0.8677 31 1 -0.3633 0.4760 -0.9107 32 1 -0.3633 -1.0268 0.0431 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 0.4919 2.0739 -1.3584 36 1 1.8677 3.1970 -1.2380 37 1 2.0319 0.4092 -2.4774 38 1 3.9763 2.6467 -1.9217 39 1 4.2799 0.8875 -2.0746 40 1 4.1978 0.9723 -4.4837 41 1 5.0151 2.5201 -4.0946 42 1 2.7830 2.5720 -5.6038 43 1 2.9703 3.7781 -4.2922 44 1 1.2151 1.3279 -4.4042 45 1 0.9453 2.8744 -3.5522 46 1 2.3276 0.9371 2.5626 47 1 1.6042 3.4577 3.6115 48 1 0.1521 2.4292 3.5713 49 1 1.3741 3.5133 6.0487 50 1 0.0571 2.3192 6.1465 51 1 3.3834 3.1356 7.3226 52 1 3.4996 1.6713 8.3295 53 1 4.8731 1.5696 6.1964 54 1 3.6787 0.2554 6.3509 55 1 6.4729 0.2267 4.2330 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733707141.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:37:02 Heat of formation + Delta-G solvation = -102.893930 kcal Electronic energy + Delta-G solvation = -32010.687225 eV Core-core repulsion = 28046.407724 eV Total energy + Delta-G solvation = -3964.279501 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 3.79 seconds Orbital eigenvalues (eV) -41.25288 -40.11648 -39.19079 -36.96892 -36.12140 -35.28999 -33.22858 -32.14980 -31.51599 -29.63168 -29.11440 -28.61948 -26.83960 -25.25747 -24.99826 -23.63364 -22.77919 -21.58126 -21.41725 -20.69048 -19.81045 -18.62700 -17.73212 -17.48666 -17.38174 -16.88110 -16.60280 -16.28581 -16.18159 -15.91289 -15.82419 -15.38993 -15.35162 -14.96808 -14.59417 -14.46424 -14.21196 -14.12332 -13.81872 -13.70287 -13.44793 -13.12041 -12.91602 -12.87216 -12.72569 -12.50884 -12.45402 -12.17796 -12.05310 -12.01448 -11.95396 -11.90802 -11.85025 -11.78984 -11.53530 -11.43445 -11.32538 -11.28412 -11.09083 -10.81656 -10.56967 -10.47108 -9.81253 -8.63482 -7.87368 -5.36762 1.40369 1.45254 1.49113 1.79972 2.38375 2.47207 3.02190 3.28507 3.43436 3.64470 3.70084 3.76438 3.91877 4.01739 4.02586 4.04451 4.20690 4.29300 4.37817 4.41839 4.46508 4.54231 4.56756 4.60451 4.62183 4.63090 4.65056 4.68189 4.74351 4.78425 4.82871 4.85213 4.93006 4.99243 5.01460 5.08316 5.10210 5.10495 5.18408 5.20681 5.25246 5.28233 5.29575 5.43170 5.45570 5.50659 5.58320 5.61612 5.65777 5.69992 6.28327 6.36272 6.75561 7.10559 7.39827 7.76485 8.32541 9.17076 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012979 B = 0.003740 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.848974 B = 7485.016670 C = 8889.546670 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.105 4.105 4 H 0.085 0.915 5 C -0.081 4.081 6 C -0.087 4.087 7 C -0.130 4.130 8 C -0.123 4.123 9 C -0.124 4.124 10 C -0.119 4.119 11 C 0.514 3.486 12 O -0.593 6.593 13 N -0.697 5.697 14 C 0.142 3.858 15 C 0.128 3.872 16 H 0.037 0.963 17 C 0.057 3.943 18 O -0.397 6.397 19 C 0.046 3.954 20 C 0.150 3.850 21 N -0.604 5.604 22 C -0.241 4.241 23 H 0.066 0.934 24 C -0.029 4.029 25 N -0.924 5.924 26 Si 0.939 3.061 27 H -0.291 1.291 28 H -0.294 1.294 29 H -0.273 1.273 30 H 0.033 0.967 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.070 0.930 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.045 0.955 39 H 0.063 0.937 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.077 0.923 45 H 0.059 0.941 46 H 0.410 0.590 47 H 0.046 0.954 48 H 0.076 0.924 49 H 0.048 0.952 50 H 0.117 0.883 51 H 0.042 0.958 52 H 0.105 0.895 53 H 0.065 0.935 54 H 0.007 0.993 55 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.472 -1.333 -11.399 13.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.147 4.147 3 C -0.127 4.127 4 H 0.103 0.897 5 C -0.119 4.119 6 C -0.106 4.106 7 C -0.167 4.167 8 C -0.160 4.160 9 C -0.161 4.161 10 C -0.156 4.156 11 C 0.302 3.698 12 O -0.476 6.476 13 N -0.347 5.347 14 C 0.018 3.982 15 C 0.021 3.979 16 H 0.054 0.946 17 C -0.021 4.021 18 O -0.315 6.315 19 C -0.032 4.032 20 C 0.024 3.976 21 N -0.330 5.330 22 C -0.371 4.371 23 H 0.083 0.917 24 C -0.226 4.226 25 N -0.570 5.570 26 Si 0.769 3.231 27 H -0.217 1.217 28 H -0.220 1.220 29 H -0.198 1.198 30 H 0.052 0.948 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.089 0.911 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.064 0.936 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.096 0.904 43 H 0.074 0.926 44 H 0.096 0.904 45 H 0.078 0.922 46 H 0.246 0.754 47 H 0.064 0.936 48 H 0.094 0.906 49 H 0.066 0.934 50 H 0.135 0.865 51 H 0.061 0.939 52 H 0.123 0.877 53 H 0.083 0.917 54 H 0.025 0.975 55 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -7.915 -0.828 -11.347 13.860 hybrid contribution 1.663 0.323 -0.221 1.709 sum -6.252 -0.505 -11.568 13.159 Atomic orbital electron populations 1.21802 0.95016 1.02217 1.01547 1.21519 0.96782 0.92946 1.03503 1.21394 1.01251 0.97214 0.92803 0.89666 1.21444 1.00655 0.98088 0.91725 1.21839 0.94263 1.00657 0.93816 1.22531 0.96024 1.00850 0.97331 1.22505 0.97986 1.00747 0.94766 1.22360 0.94513 0.99144 1.00127 1.22203 0.97801 1.00197 0.95427 1.20992 0.79592 0.84073 0.85167 1.90597 1.41342 1.28621 1.87010 1.46038 1.51795 1.31935 1.04907 1.21066 0.97431 0.95498 0.84242 1.21528 0.85343 0.97276 0.93728 0.94571 1.22986 0.98387 0.96321 0.84437 1.87806 1.21685 1.80949 1.41092 1.23218 0.80815 0.99357 0.99787 1.21226 0.97254 0.94770 0.84325 1.44291 0.99953 1.77454 1.11335 1.19187 0.97122 1.16309 1.04525 0.91669 1.25535 1.00518 0.96409 1.00134 1.70096 1.19337 1.22216 1.45313 0.85777 0.79151 0.77766 0.80419 1.21750 1.21977 1.19841 0.94827 0.91649 0.91007 0.88688 0.92107 0.91140 0.93699 0.89387 0.93571 0.91846 0.90464 0.91864 0.90411 0.92552 0.90419 0.92205 0.75367 0.93596 0.90563 0.93406 0.86507 0.93916 0.87694 0.91692 0.97456 0.94057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.39 9.32 71.98 0.67 -2.72 16 2 C -0.11 -2.66 5.41 30.60 0.17 -2.49 16 3 C -0.11 -3.13 2.43 -11.54 -0.03 -3.16 16 4 H 0.09 2.74 7.37 -2.38 -0.02 2.73 16 5 C -0.08 -2.17 2.97 30.59 0.09 -2.08 16 6 C -0.09 -1.84 2.79 -10.07 -0.03 -1.87 16 7 C -0.13 -2.98 5.46 31.69 0.17 -2.81 16 8 C -0.12 -2.29 6.91 31.91 0.22 -2.06 16 9 C -0.12 -2.16 6.83 31.67 0.22 -1.95 16 10 C -0.12 -2.16 6.46 31.32 0.20 -1.95 16 11 C 0.51 18.79 5.74 87.66 0.50 19.30 16 12 O -0.59 -24.88 15.93 -3.04 -0.05 -24.93 16 13 N -0.70 -25.98 3.71 -463.08 -1.72 -27.70 16 14 C 0.14 5.21 4.44 86.38 0.38 5.59 16 15 C 0.13 4.86 3.20 44.96 0.14 5.01 16 16 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 17 C 0.06 1.91 6.29 72.08 0.45 2.36 16 18 O -0.40 -14.59 10.74 -148.98 -1.60 -16.19 16 19 C 0.05 1.71 6.98 72.08 0.50 2.21 16 20 C 0.15 6.80 5.39 86.35 0.47 7.27 16 21 N -0.60 -27.67 3.03 -673.74 -2.04 -29.71 16 22 C -0.24 -11.94 7.16 84.03 0.60 -11.33 16 23 H 0.07 3.31 5.79 -2.91 -0.02 3.30 16 24 C -0.03 -1.50 5.01 84.86 0.43 -1.07 16 25 N -0.92 -50.08 11.20 21.65 0.24 -49.84 16 26 Si 0.94 42.78 29.57 68.60 2.03 44.81 16 27 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 28 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 29 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 30 H 0.03 0.91 7.06 -2.39 -0.02 0.89 16 31 H 0.06 1.38 6.50 -2.39 -0.02 1.37 16 32 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.09 1.87 6.34 -2.39 -0.02 1.86 16 34 H 0.06 1.58 7.63 -2.39 -0.02 1.56 16 35 H 0.07 1.86 6.31 -2.38 -0.02 1.85 16 36 H 0.04 1.40 7.83 -2.39 -0.02 1.38 16 37 H 0.09 1.63 6.28 -2.38 -0.01 1.62 16 38 H 0.05 1.25 7.76 -2.38 -0.02 1.23 16 39 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 40 H 0.08 1.25 8.14 -2.38 -0.02 1.23 16 41 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 45 H 0.06 1.16 7.67 -2.38 -0.02 1.14 16 46 H 0.41 16.09 6.87 -92.71 -0.64 15.46 16 47 H 0.05 1.87 7.51 -2.39 -0.02 1.85 16 48 H 0.08 2.49 8.14 -2.39 -0.02 2.47 16 49 H 0.05 1.60 8.14 -2.39 -0.02 1.58 16 50 H 0.12 3.12 8.14 -2.39 -0.02 3.10 16 51 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 52 H 0.11 3.35 8.14 -2.39 -0.02 3.33 16 53 H 0.06 3.29 6.34 -2.39 -0.02 3.27 16 54 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 55 H 0.25 13.39 8.31 -92.70 -0.77 12.62 16 Total: -1.00 -60.05 407.84 2.25 -57.80 By element: Atomic # 1 Polarization: 37.30 SS G_CDS: 0.22 Total: 37.52 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: 5.16 Total: 8.24 kcal Atomic # 7 Polarization: -103.73 SS G_CDS: -3.52 Total: -107.24 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -1.65 Total: -41.12 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Total: -60.05 2.25 -57.80 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733707141.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.096 kcal (2) G-P(sol) polarization free energy of solvation -60.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.80 seconds