Wall clock time and date at job start Tue Mar 31 2020 22:12:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47343 * 2 1 4 4 H 1.09006 * 109.47677 * 55.02197 * 3 2 1 5 5 C 1.53103 * 109.49625 * 174.96140 * 3 2 1 6 6 C 1.53180 * 109.15856 * 177.50930 * 5 3 2 7 7 H 1.09004 * 109.53877 * 63.06586 * 6 5 3 8 8 C 1.50698 * 109.54250 * 183.24333 * 6 5 3 9 9 O 1.21280 * 120.00158 * 7.74395 * 8 6 5 10 10 N 1.34772 * 120.00124 * 187.74479 * 8 6 5 11 11 C 1.46928 * 120.62799 * 4.40332 * 10 8 6 12 12 C 1.53190 * 108.77750 * 126.41232 * 11 10 8 13 13 C 1.53049 * 109.31146 * 54.63538 * 12 11 10 14 14 C 1.52997 * 109.45897 * 178.61529 * 13 12 11 15 15 C 1.52998 * 109.46774 * 186.14654 * 14 13 12 16 16 N 1.46500 * 109.45815 * 58.65212 * 13 12 11 17 17 C 1.36946 * 119.99716 * 60.42675 * 16 13 12 18 18 H 1.07996 * 119.99698 * 7.11609 * 17 16 13 19 19 C 1.38808 * 119.99595 * 187.11386 * 17 16 13 20 20 N 1.31621 * 120.00182 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99950 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.47054 * 60.00079 * 21 19 17 23 23 H 1.48500 * 109.47486 * 180.02562 * 21 19 17 24 24 H 1.48508 * 109.46891 * 300.00451 * 21 19 17 25 25 C 1.53043 * 109.53522 * 298.63687 * 13 12 11 26 26 C 1.46923 * 120.63579 * 184.42430 * 10 8 6 27 27 C 1.53176 * 109.11026 * 303.15493 * 6 5 3 28 28 C 1.53095 * 109.16285 * 56.93530 * 27 6 5 29 29 O 1.42899 * 109.48021 * 295.00384 * 3 2 1 30 30 H 1.08997 * 109.47163 * 299.99822 * 1 2 3 31 31 H 1.08998 * 109.47554 * 59.99635 * 1 2 3 32 32 H 1.09000 * 109.47102 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47163 * 240.00178 * 2 1 3 34 34 H 1.08998 * 109.47554 * 120.00364 * 2 1 3 35 35 H 1.09004 * 109.44957 * 57.64883 * 5 3 2 36 36 H 1.09003 * 109.59424 * 297.46063 * 5 3 2 37 37 H 1.08996 * 109.58906 * 6.62318 * 11 10 8 38 38 H 1.09005 * 109.58662 * 246.20459 * 11 10 8 39 39 H 1.08992 * 109.49899 * 294.68631 * 12 11 10 40 40 H 1.09003 * 109.49996 * 174.58300 * 12 11 10 41 41 H 1.09000 * 109.47198 * 306.14210 * 14 13 12 42 42 H 1.08996 * 109.47139 * 66.14811 * 14 13 12 43 43 H 1.08999 * 109.47087 * 173.39580 * 15 14 13 44 44 H 1.08997 * 109.47514 * 293.39445 * 15 14 13 45 45 H 1.09003 * 109.47272 * 53.40238 * 15 14 13 46 46 H 0.97003 * 120.00302 * 240.41856 * 16 13 12 47 47 H 0.96996 * 119.99724 * 179.97438 * 20 19 17 48 48 H 1.09003 * 109.49614 * 181.31493 * 25 13 12 49 49 H 1.08997 * 109.49447 * 301.40952 * 25 13 12 50 50 H 1.09002 * 109.58599 * 113.79558 * 26 10 8 51 51 H 1.09003 * 109.70104 * 353.44284 * 26 10 8 52 52 H 1.08991 * 109.52417 * 176.84000 * 27 6 5 53 53 H 1.09002 * 109.52291 * 297.02954 * 27 6 5 54 54 H 1.09000 * 109.47901 * 62.37238 * 28 27 6 55 55 H 1.09004 * 109.48144 * 182.41295 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6057 1.9816 0.8421 5 6 3.5658 1.4450 0.1268 6 6 4.0732 2.8889 0.0634 7 1 3.6808 3.4507 0.9111 8 6 5.5795 2.8963 0.1073 9 8 6.1933 1.8524 0.0402 10 7 6.2446 4.0629 0.2212 11 6 5.5155 5.3259 0.4002 12 6 6.0620 6.0392 1.6408 13 6 7.5777 6.2023 1.5043 14 6 8.1224 6.9452 2.7259 15 6 9.6089 7.2436 2.5202 16 7 7.8788 6.9689 0.2927 17 6 7.4019 8.2451 0.1538 18 1 6.9031 8.7282 0.9809 19 6 7.5599 8.9177 -1.0501 20 7 8.1675 8.3288 -2.0583 21 14 6.9088 10.6583 -1.2400 22 1 7.5659 11.5438 -0.2454 23 1 7.2014 11.1496 -2.6105 24 1 5.4409 10.6649 -1.0151 25 6 8.2345 4.8232 1.4114 26 6 7.7125 4.0961 0.1682 27 6 3.5954 3.5314 -1.2425 28 6 2.0684 3.4485 -1.3141 29 8 1.6620 2.0816 -1.2209 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.9989 0.8704 -0.6920 36 1 3.8542 0.9989 1.0786 37 1 4.4539 5.1190 0.5357 38 1 5.6577 5.9574 -0.4768 39 1 5.8383 5.4479 2.5286 40 1 5.5971 7.0211 1.7304 41 1 7.5784 7.8809 2.8545 42 1 7.9956 6.3261 3.6139 43 1 9.9691 7.8730 3.3339 44 1 10.1690 6.3086 2.5088 45 1 9.7475 7.7619 1.5713 46 1 8.4161 6.5726 -0.4110 47 1 8.2775 8.7987 -2.8996 48 1 9.3158 4.9394 1.3377 49 1 7.9903 4.2433 2.3014 50 1 8.0339 4.6273 -0.7277 51 1 8.1026 3.0785 0.1494 52 1 3.9051 4.5761 -1.2690 53 1 4.0292 3.0003 -2.0898 54 1 1.6346 4.0138 -0.4893 55 1 1.7257 3.8658 -2.2610 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733806662.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:46 Heat of formation + Delta-G solvation = -105.387327 kcal Electronic energy + Delta-G solvation = -32048.444865 eV Core-core repulsion = 28084.057242 eV Total energy + Delta-G solvation = -3964.387623 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = -0.57 seconds Orbital eigenvalues (eV) -41.77312 -40.29443 -39.20731 -36.27904 -35.06717 -34.72609 -34.34243 -32.05146 -31.61506 -30.80423 -30.69536 -27.37005 -26.11770 -25.57817 -24.81642 -24.02041 -23.13563 -22.30544 -21.55579 -20.42960 -19.47785 -18.88363 -18.19844 -17.39104 -17.16680 -16.73744 -16.55151 -16.11517 -15.74821 -15.50592 -15.41724 -15.31668 -15.00833 -14.88392 -14.55541 -14.50844 -14.39158 -14.16353 -13.90088 -13.78714 -13.42452 -13.04863 -12.86562 -12.76909 -12.71787 -12.67059 -12.58322 -12.35428 -12.27388 -12.18404 -12.10741 -12.06829 -11.80325 -11.77018 -11.63175 -11.49548 -11.35402 -11.29763 -10.95262 -10.83491 -10.73898 -10.32104 -9.57904 -8.80904 -7.81215 -5.06341 1.51437 1.52720 1.57563 1.58447 2.04389 2.64142 2.85582 3.39949 3.52938 3.58843 3.73558 3.84822 3.91068 3.94364 3.98558 4.13016 4.18678 4.19515 4.25524 4.35593 4.37636 4.42990 4.46172 4.52897 4.60957 4.62343 4.70256 4.72867 4.73171 4.78865 4.82654 4.84459 4.88040 4.91861 5.05144 5.08796 5.11204 5.15288 5.15406 5.20064 5.21210 5.27437 5.33078 5.39746 5.40529 5.49075 5.56012 5.67519 5.69980 5.77193 6.32421 6.40866 6.50156 7.15567 7.48254 8.24790 8.48846 9.41959 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013945 B = 0.003233 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2007.415341 B = 8659.742166 C = 9818.037058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.117 4.117 3 C 0.092 3.908 4 H 0.075 0.925 5 C -0.123 4.123 6 C -0.101 4.101 7 H 0.118 0.882 8 C 0.514 3.486 9 O -0.588 6.588 10 N -0.596 5.596 11 C 0.121 3.879 12 C -0.131 4.131 13 C 0.195 3.805 14 C -0.119 4.119 15 C -0.137 4.137 16 N -0.715 5.715 17 C -0.201 4.201 18 H 0.074 0.926 19 C -0.072 4.072 20 N -0.969 5.969 21 Si 0.951 3.049 22 H -0.287 1.287 23 H -0.308 1.308 24 H -0.278 1.278 25 C -0.118 4.118 26 C 0.118 3.882 27 C -0.146 4.146 28 C 0.067 3.933 29 O -0.392 6.392 30 H 0.060 0.940 31 H 0.050 0.950 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.056 0.944 39 H 0.073 0.927 40 H 0.069 0.931 41 H 0.046 0.954 42 H 0.069 0.931 43 H 0.047 0.953 44 H 0.051 0.949 45 H 0.040 0.960 46 H 0.370 0.630 47 H 0.243 0.757 48 H 0.075 0.925 49 H 0.079 0.921 50 H 0.050 0.950 51 H 0.077 0.923 52 H 0.084 0.916 53 H 0.055 0.945 54 H 0.073 0.927 55 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.980 -12.069 9.234 19.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C 0.035 3.965 4 H 0.093 0.907 5 C -0.161 4.161 6 C -0.122 4.122 7 H 0.136 0.864 8 C 0.303 3.697 9 O -0.469 6.469 10 N -0.327 5.327 11 C -0.001 4.001 12 C -0.171 4.171 13 C 0.105 3.895 14 C -0.158 4.158 15 C -0.195 4.195 16 N -0.355 5.355 17 C -0.333 4.333 18 H 0.092 0.908 19 C -0.264 4.264 20 N -0.621 5.621 21 Si 0.783 3.217 22 H -0.214 1.214 23 H -0.235 1.235 24 H -0.204 1.204 25 C -0.157 4.157 26 C -0.005 4.005 27 C -0.185 4.185 28 C -0.010 4.010 29 O -0.312 6.312 30 H 0.079 0.921 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.107 0.893 35 H 0.074 0.926 36 H 0.099 0.901 37 H 0.118 0.882 38 H 0.074 0.926 39 H 0.091 0.909 40 H 0.087 0.913 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.202 0.798 47 H 0.052 0.948 48 H 0.093 0.907 49 H 0.097 0.903 50 H 0.068 0.932 51 H 0.095 0.905 52 H 0.103 0.897 53 H 0.073 0.927 54 H 0.091 0.909 55 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -12.855 -12.535 9.087 20.123 hybrid contribution 0.764 1.419 -0.872 1.832 sum -12.091 -11.116 8.214 18.364 Atomic orbital electron populations 1.21684 0.94486 1.02056 1.02066 1.21567 0.97215 0.93610 1.03015 1.22265 0.92023 0.95016 0.87243 0.90711 1.22000 0.96465 0.94366 1.03255 1.21369 0.90185 0.99611 1.01032 0.86399 1.21076 0.91046 0.82562 0.75000 1.90624 1.70831 1.32696 1.52774 1.48130 1.06929 1.07256 1.70375 1.21741 0.95870 0.83363 0.99107 1.22258 0.97680 1.00297 0.96870 1.19821 0.92649 0.89751 0.87296 1.21841 0.96336 0.99922 0.97722 1.21596 0.96285 1.00645 1.00935 1.42571 1.61716 1.12996 1.18235 1.19285 1.27578 0.91024 0.95462 0.90786 1.25267 1.03504 1.01134 0.96476 1.69793 1.50563 1.38256 1.03485 0.85538 0.78505 0.82096 0.75577 1.21374 1.23523 1.20431 1.22009 1.00609 0.95495 0.97538 1.21410 0.79937 1.00603 0.98528 1.22237 0.98589 1.01825 0.95810 1.22636 0.91587 0.82881 1.03850 1.87919 1.78405 1.25393 1.39462 0.92099 0.93083 0.91892 0.92188 0.89275 0.92576 0.90141 0.88182 0.92569 0.90854 0.91281 0.93497 0.91271 0.93343 0.92979 0.94053 0.79767 0.94765 0.90677 0.90256 0.93162 0.90478 0.89704 0.92652 0.90896 0.87544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 9.81 71.98 0.71 -1.32 16 2 C -0.12 -1.86 5.64 30.59 0.17 -1.69 16 3 C 0.09 1.68 2.64 30.63 0.08 1.76 16 4 H 0.08 1.13 8.14 -2.38 -0.02 1.11 16 5 C -0.12 -2.73 4.10 30.69 0.13 -2.60 16 6 C -0.10 -2.34 1.75 -11.42 -0.02 -2.36 16 7 H 0.12 2.17 7.07 -2.38 -0.02 2.16 16 8 C 0.51 15.97 6.98 87.66 0.61 16.58 16 9 O -0.59 -22.24 15.35 -3.03 -0.05 -22.29 16 10 N -0.60 -18.60 2.97 -818.93 -2.43 -21.04 16 11 C 0.12 3.58 4.83 86.36 0.42 3.99 16 12 C -0.13 -3.85 4.71 30.67 0.14 -3.70 16 13 C 0.19 6.44 0.43 3.63 0.00 6.44 16 14 C -0.12 -3.67 4.69 30.59 0.14 -3.53 16 15 C -0.14 -4.42 9.42 71.98 0.68 -3.74 16 16 N -0.72 -30.64 3.06 -303.21 -0.93 -31.57 16 17 C -0.20 -9.71 8.45 84.03 0.71 -9.00 16 18 H 0.07 3.46 6.80 -2.91 -0.02 3.44 16 19 C -0.07 -3.81 5.50 84.86 0.47 -3.34 16 20 N -0.97 -56.04 13.07 21.65 0.28 -55.76 16 21 Si 0.95 43.82 29.55 68.60 2.03 45.85 16 22 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 23 H -0.31 -14.86 7.11 99.48 0.71 -14.16 16 24 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 25 C -0.12 -3.58 4.76 30.67 0.15 -3.44 16 26 C 0.12 3.98 6.16 86.36 0.53 4.51 16 27 C -0.15 -3.33 5.09 30.68 0.16 -3.17 16 28 C 0.07 1.23 6.84 72.01 0.49 1.73 16 29 O -0.39 -8.40 9.94 -148.98 -1.48 -9.88 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.05 0.83 7.82 -2.39 -0.02 0.81 16 32 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 34 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.06 1.53 7.92 -2.38 -0.02 1.51 16 36 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.10 2.29 4.99 -2.39 -0.01 2.28 16 38 H 0.06 2.10 7.74 -2.38 -0.02 2.08 16 39 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 40 H 0.07 2.15 7.49 -2.39 -0.02 2.13 16 41 H 0.05 1.56 7.34 -2.39 -0.02 1.54 16 42 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.05 1.52 6.89 -2.39 -0.02 1.50 16 45 H 0.04 1.64 7.00 -2.39 -0.02 1.63 16 46 H 0.37 17.96 6.47 -92.71 -0.60 17.36 16 47 H 0.24 14.11 8.31 -92.71 -0.77 13.33 16 48 H 0.07 2.28 6.69 -2.39 -0.02 2.27 16 49 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 50 H 0.05 1.95 6.93 -2.39 -0.02 1.94 16 51 H 0.08 2.65 7.01 -2.39 -0.02 2.63 16 52 H 0.08 1.97 6.12 -2.39 -0.01 1.96 16 53 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 54 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 55 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 Total: -1.00 -62.41 405.52 3.25 -59.16 By element: Atomic # 1 Polarization: 38.13 SS G_CDS: 0.26 Total: 38.39 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: 5.57 Total: -2.87 kcal Atomic # 7 Polarization: -105.29 SS G_CDS: -3.08 Total: -108.36 kcal Atomic # 8 Polarization: -30.64 SS G_CDS: -1.53 Total: -32.17 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 2.03 Total: 45.85 kcal Total: -62.41 3.25 -59.16 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733806662.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.229 kcal (2) G-P(sol) polarization free energy of solvation -62.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.247 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.57 seconds