Wall clock time and date at job start Tue Mar 31 2020 22:12:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46870 * 2 1 4 4 H 1.09001 * 109.47968 * 305.02247 * 3 2 1 5 5 C 1.53099 * 109.47744 * 184.99941 * 3 2 1 6 6 C 1.53175 * 109.16033 * 182.39894 * 5 3 2 7 7 H 1.09003 * 109.54140 * 297.11315 * 6 5 3 8 8 C 1.50706 * 109.54088 * 176.84925 * 6 5 3 9 9 O 1.21278 * 119.99802 * 345.07105 * 8 6 5 10 10 N 1.34768 * 120.00061 * 165.07436 * 8 6 5 11 11 C 1.46929 * 120.63078 * 5.26787 * 10 8 6 12 12 C 1.52760 * 109.00889 * 233.58714 * 11 10 8 13 13 C 1.53036 * 109.38441 * 305.58559 * 12 11 10 14 14 C 1.53001 * 109.46345 * 181.26167 * 13 12 11 15 15 C 1.53001 * 109.46908 * 63.89762 * 14 13 12 16 16 N 1.46501 * 109.46266 * 301.22092 * 13 12 11 17 17 C 1.36935 * 120.00325 * 175.91175 * 16 13 12 18 18 H 1.08002 * 119.99704 * 2.81327 * 17 16 13 19 19 C 1.38810 * 120.00438 * 182.80383 * 17 16 13 20 20 N 1.31619 * 120.00383 * 180.02562 * 19 17 16 21 21 Si 1.86805 * 119.99542 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47105 * 89.99915 * 21 19 17 23 23 H 1.48500 * 109.47070 * 209.99721 * 21 19 17 24 24 H 1.48494 * 109.47417 * 330.00002 * 21 19 17 25 25 C 1.53037 * 109.53696 * 61.24044 * 13 12 11 26 26 C 1.46926 * 120.63453 * 185.55321 * 10 8 6 27 27 C 1.53178 * 109.03913 * 56.98361 * 6 5 3 28 28 C 1.53096 * 109.15846 * 303.01738 * 27 6 5 29 29 O 1.42903 * 109.41799 * 57.61151 * 28 27 6 30 30 H 1.09001 * 109.47328 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47390 * 299.99777 * 1 2 3 32 32 H 1.08999 * 109.47570 * 59.99903 * 1 2 3 33 33 H 1.09000 * 109.46920 * 240.00374 * 2 1 3 34 34 H 1.08998 * 109.46919 * 120.00467 * 2 1 3 35 35 H 1.08995 * 109.51936 * 302.30557 * 5 3 2 36 36 H 1.09000 * 109.51829 * 62.49176 * 5 3 2 37 37 H 1.09005 * 109.58554 * 353.41909 * 11 10 8 38 38 H 1.08997 * 109.58808 * 113.84768 * 11 10 8 39 39 H 1.09009 * 109.56622 * 185.55207 * 12 11 10 40 40 H 1.08999 * 109.39212 * 65.51749 * 12 11 10 41 41 H 1.09003 * 109.47334 * 183.90110 * 14 13 12 42 42 H 1.09007 * 109.46907 * 303.89972 * 14 13 12 43 43 H 1.08992 * 109.47492 * 53.74089 * 15 14 13 44 44 H 1.09007 * 109.46764 * 173.74305 * 15 14 13 45 45 H 1.09002 * 109.46962 * 293.73571 * 15 14 13 46 46 H 0.97000 * 119.99668 * 355.91619 * 16 13 12 47 47 H 0.96991 * 119.99789 * 180.02562 * 20 19 17 48 48 H 1.09002 * 109.49950 * 178.68494 * 25 13 12 49 49 H 1.09006 * 109.52492 * 58.60602 * 25 13 12 50 50 H 1.09004 * 109.58351 * 246.15717 * 26 10 8 51 51 H 1.08998 * 109.58287 * 6.57318 * 26 10 8 52 52 H 1.08999 * 109.51971 * 183.11263 * 27 6 5 53 53 H 1.08998 * 109.52133 * 62.92282 * 27 6 5 54 54 H 1.08999 * 109.48205 * 297.62488 * 28 27 6 55 55 H 1.09006 * 109.48525 * 177.59866 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9818 -0.8415 5 6 3.5658 1.4446 -0.1258 6 6 4.0733 2.8885 -0.0647 7 1 3.6790 3.4497 -0.9120 8 6 5.5797 2.8957 -0.1100 9 8 6.1971 1.8709 0.0881 10 7 6.2405 4.0410 -0.3706 11 6 5.5143 5.3118 -0.4987 12 6 5.8820 5.9629 -1.8308 13 6 7.4035 6.0955 -1.9284 14 6 7.7723 6.7761 -3.2482 15 6 7.2164 8.2015 -3.2597 16 7 7.8961 6.9025 -0.8093 17 6 9.2421 7.0880 -0.6391 18 1 9.9385 6.6777 -1.3553 19 6 9.7114 7.8037 0.4538 20 7 11.0051 7.9825 0.6171 21 14 8.5067 8.5130 1.6928 22 1 8.2570 7.5176 2.7662 23 1 9.0775 9.7486 2.2867 24 1 7.2280 8.8366 1.0107 25 6 8.0428 4.7061 -1.8753 26 6 7.7002 4.0415 -0.5382 27 6 3.5969 3.5308 1.2417 28 6 2.0699 3.4481 1.3146 29 8 1.6632 2.0814 1.2215 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.9995 0.8711 0.6933 36 1 3.8534 0.9972 -1.0772 37 1 4.4410 5.1239 -0.4694 38 1 5.7935 5.9762 0.3190 39 1 5.4261 6.9512 -1.8922 40 1 5.5176 5.3427 -2.6496 41 1 8.8571 6.8083 -3.3498 42 1 7.3462 6.2132 -4.0787 43 1 7.5542 8.7305 -2.3686 44 1 7.5718 8.7229 -4.1485 45 1 6.1269 8.1665 -3.2704 46 1 7.2686 7.3052 -0.1888 47 1 11.3330 8.4822 1.3810 48 1 9.1248 4.7996 -1.9684 49 1 7.6586 4.0967 -2.6934 50 1 8.1613 4.6002 0.2763 51 1 8.0687 3.0157 -0.5349 52 1 3.9068 4.5755 1.2681 53 1 4.0313 2.9995 2.0884 54 1 1.6354 4.0137 0.4903 55 1 1.7280 3.8654 2.2618 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733806663.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:12:49 Heat of formation + Delta-G solvation = -104.140066 kcal Electronic energy + Delta-G solvation = -32086.349739 eV Core-core repulsion = 28122.016201 eV Total energy + Delta-G solvation = -3964.333538 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 3.05 seconds Orbital eigenvalues (eV) -41.81264 -40.34810 -39.27677 -36.34857 -35.04824 -34.70636 -34.44192 -32.28509 -31.89490 -31.11264 -30.74082 -27.49808 -26.10848 -25.32730 -24.69665 -24.12054 -23.24443 -22.21365 -21.50358 -20.46056 -19.74716 -19.40526 -18.21861 -17.38872 -17.21013 -16.74018 -16.41784 -16.29614 -15.85564 -15.56275 -15.50402 -15.10977 -15.08388 -14.80723 -14.59302 -14.54722 -14.47933 -14.24327 -14.21256 -13.75871 -13.51909 -13.18850 -13.04157 -12.93789 -12.73938 -12.63238 -12.56739 -12.34994 -12.29051 -12.12600 -12.09984 -11.98799 -11.78276 -11.75431 -11.62489 -11.59089 -11.51058 -11.32645 -11.01661 -10.84632 -10.80749 -10.31187 -9.66796 -9.14824 -7.92501 -5.23171 1.36500 1.41479 1.48538 1.57659 1.99726 2.54075 2.87665 3.37666 3.40734 3.57536 3.60029 3.74600 3.80872 3.92268 3.99703 4.09816 4.14066 4.18790 4.21155 4.35302 4.38683 4.44707 4.45670 4.52916 4.53950 4.55966 4.67371 4.70908 4.72601 4.76381 4.79394 4.83541 4.86744 4.92187 5.05665 5.07322 5.11775 5.12464 5.15085 5.15849 5.21133 5.27611 5.31575 5.33777 5.35910 5.49162 5.54336 5.65651 5.68550 5.92084 6.31890 6.35071 6.48245 7.15026 7.19415 7.95714 8.14212 9.29732 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016363 B = 0.003106 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.715528 B = 9012.399655 C = 9393.652087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.119 4.119 3 C 0.095 3.905 4 H 0.079 0.921 5 C -0.127 4.127 6 C -0.100 4.100 7 H 0.126 0.874 8 C 0.512 3.488 9 O -0.592 6.592 10 N -0.599 5.599 11 C 0.102 3.898 12 C -0.129 4.129 13 C 0.201 3.799 14 C -0.121 4.121 15 C -0.137 4.137 16 N -0.735 5.735 17 C -0.192 4.192 18 H 0.056 0.944 19 C -0.070 4.070 20 N -0.991 5.991 21 Si 0.941 3.059 22 H -0.291 1.291 23 H -0.308 1.308 24 H -0.240 1.240 25 C -0.123 4.123 26 C 0.129 3.871 27 C -0.148 4.148 28 C 0.066 3.934 29 O -0.395 6.395 30 H 0.060 0.940 31 H 0.051 0.949 32 H 0.061 0.939 33 H 0.087 0.913 34 H 0.057 0.943 35 H 0.053 0.947 36 H 0.077 0.923 37 H 0.121 0.879 38 H 0.059 0.941 39 H 0.098 0.902 40 H 0.094 0.906 41 H 0.028 0.972 42 H 0.074 0.926 43 H 0.039 0.961 44 H 0.044 0.956 45 H 0.071 0.929 46 H 0.364 0.636 47 H 0.251 0.749 48 H 0.048 0.952 49 H 0.071 0.929 50 H 0.049 0.951 51 H 0.062 0.938 52 H 0.095 0.905 53 H 0.052 0.948 54 H 0.078 0.922 55 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.892 -8.904 -5.889 28.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C 0.038 3.962 4 H 0.097 0.903 5 C -0.165 4.165 6 C -0.120 4.120 7 H 0.144 0.856 8 C 0.302 3.698 9 O -0.472 6.472 10 N -0.330 5.330 11 C -0.020 4.020 12 C -0.167 4.167 13 C 0.111 3.889 14 C -0.161 4.161 15 C -0.194 4.194 16 N -0.378 5.378 17 C -0.323 4.323 18 H 0.074 0.926 19 C -0.260 4.260 20 N -0.643 5.643 21 Si 0.771 3.229 22 H -0.218 1.218 23 H -0.236 1.236 24 H -0.165 1.165 25 C -0.163 4.163 26 C 0.006 3.994 27 C -0.187 4.187 28 C -0.011 4.011 29 O -0.314 6.314 30 H 0.079 0.921 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.076 0.924 35 H 0.072 0.928 36 H 0.095 0.905 37 H 0.139 0.861 38 H 0.077 0.923 39 H 0.117 0.883 40 H 0.113 0.887 41 H 0.047 0.953 42 H 0.092 0.908 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.090 0.910 46 H 0.198 0.802 47 H 0.060 0.940 48 H 0.066 0.934 49 H 0.089 0.911 50 H 0.068 0.932 51 H 0.080 0.920 52 H 0.113 0.887 53 H 0.071 0.929 54 H 0.096 0.904 55 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -25.474 -9.537 -5.686 27.789 hybrid contribution 1.262 0.741 1.102 1.832 sum -24.213 -8.796 -4.584 26.165 Atomic orbital electron populations 1.21682 0.94411 1.01994 1.02155 1.21578 0.97278 0.93922 1.02841 1.22226 0.91780 0.94871 0.87372 0.90289 1.22025 0.96687 0.94722 1.03060 1.21405 0.89468 0.99590 1.01585 0.85575 1.21233 0.91245 0.82204 0.75121 1.90650 1.70806 1.34113 1.51671 1.48172 1.07366 1.08283 1.69206 1.21969 0.97852 0.83767 0.98363 1.22108 0.94130 1.02707 0.97759 1.19798 0.93030 0.88594 0.87463 1.21849 0.99538 0.97172 0.97517 1.21611 1.00927 0.96150 1.00699 1.42792 1.02783 1.60580 1.31640 1.18797 0.83655 1.25088 1.04760 0.92574 1.25354 0.96745 1.02950 1.00958 1.69877 1.13796 1.48506 1.32142 0.85606 0.80272 0.77157 0.79914 1.21803 1.23575 1.16450 1.22144 1.00527 0.97635 0.95988 1.21222 0.80183 0.99778 0.98246 1.22294 0.98694 1.02140 0.95525 1.22687 0.91473 0.82791 1.04127 1.87926 1.78447 1.25696 1.39353 0.92123 0.92972 0.91945 0.89488 0.92427 0.92842 0.90453 0.86074 0.92255 0.88339 0.88717 0.95302 0.90794 0.94195 0.93640 0.91046 0.80175 0.94035 0.93370 0.91054 0.93248 0.91967 0.88677 0.92866 0.90366 0.87385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.81 71.98 0.71 -1.06 16 2 C -0.12 -1.70 5.64 30.60 0.17 -1.53 16 3 C 0.09 1.47 2.64 30.63 0.08 1.55 16 4 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 5 C -0.13 -2.52 4.17 30.69 0.13 -2.39 16 6 C -0.10 -1.90 1.74 -11.42 -0.02 -1.92 16 7 H 0.13 1.62 7.11 -2.39 -0.02 1.60 16 8 C 0.51 14.80 6.93 87.66 0.61 15.40 16 9 O -0.59 -22.47 15.38 -3.02 -0.05 -22.52 16 10 N -0.60 -17.08 2.98 -819.74 -2.44 -19.52 16 11 C 0.10 2.21 5.14 86.22 0.44 2.66 16 12 C -0.13 -2.76 4.69 30.53 0.14 -2.61 16 13 C 0.20 6.25 0.44 3.63 0.00 6.25 16 14 C -0.12 -3.68 4.81 30.59 0.15 -3.54 16 15 C -0.14 -3.87 9.38 71.98 0.68 -3.19 16 16 N -0.73 -29.28 2.85 -303.23 -0.86 -30.15 16 17 C -0.19 -9.95 9.08 84.03 0.76 -9.18 16 18 H 0.06 3.29 6.97 -2.91 -0.02 3.27 16 19 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 20 N -0.99 -62.80 13.97 21.65 0.30 -62.49 16 21 Si 0.94 43.83 27.76 68.60 1.90 45.73 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.96 16 23 H -0.31 -15.07 7.11 99.48 0.71 -14.37 16 24 H -0.24 -9.53 6.48 99.48 0.64 -8.89 16 25 C -0.12 -4.14 4.64 30.67 0.14 -4.00 16 26 C 0.13 4.61 6.16 86.36 0.53 5.15 16 27 C -0.15 -2.55 5.09 30.69 0.16 -2.40 16 28 C 0.07 0.87 6.84 72.01 0.49 1.36 16 29 O -0.39 -7.11 9.95 -148.98 -1.48 -8.59 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.74 7.83 -2.38 -0.02 0.72 16 32 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.05 1.38 7.84 -2.39 -0.02 1.37 16 36 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.12 1.62 4.69 -2.38 -0.01 1.61 16 38 H 0.06 1.48 7.02 -2.39 -0.02 1.46 16 39 H 0.10 1.80 6.61 -2.38 -0.02 1.78 16 40 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.03 1.07 7.58 -2.39 -0.02 1.05 16 42 H 0.07 1.81 8.14 -2.38 -0.02 1.80 16 43 H 0.04 1.39 7.29 -2.39 -0.02 1.37 16 44 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 45 H 0.07 1.56 6.82 -2.39 -0.02 1.54 16 46 H 0.36 14.01 4.45 -92.71 -0.41 13.60 16 47 H 0.25 15.44 8.31 -92.71 -0.77 14.66 16 48 H 0.05 1.92 7.15 -2.39 -0.02 1.90 16 49 H 0.07 2.08 8.14 -2.38 -0.02 2.07 16 50 H 0.05 2.11 7.61 -2.38 -0.02 2.09 16 51 H 0.06 2.39 7.04 -2.39 -0.02 2.38 16 52 H 0.09 1.39 6.22 -2.39 -0.01 1.38 16 53 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 54 H 0.08 0.67 8.14 -2.39 -0.02 0.65 16 55 H 0.11 1.20 8.14 -2.38 -0.02 1.18 16 Total: -1.00 -73.03 402.69 3.40 -69.63 By element: Atomic # 1 Polarization: 30.45 SS G_CDS: 0.39 Total: 30.84 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 5.64 Total: -2.93 kcal Atomic # 7 Polarization: -109.16 SS G_CDS: -3.00 Total: -112.16 kcal Atomic # 8 Polarization: -29.58 SS G_CDS: -1.53 Total: -31.11 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.90 Total: 45.73 kcal Total: -73.03 3.40 -69.63 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733806663.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.507 kcal (2) G-P(sol) polarization free energy of solvation -73.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.538 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.06 seconds