Wall clock time and date at job start Tue Mar 31 2020 23:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.46995 * 2 1 4 4 H 1.08998 * 109.47591 * 305.00616 * 3 2 1 5 5 C 1.53008 * 109.46959 * 65.00428 * 3 2 1 6 6 C 1.53001 * 109.47352 * 185.00182 * 3 2 1 7 7 H 1.08998 * 109.46884 * 59.99824 * 6 3 2 8 8 O 1.42904 * 109.46843 * 300.00403 * 6 3 2 9 9 C 1.42902 * 114.00073 * 149.99925 * 8 6 3 10 10 C 1.50699 * 109.47373 * 180.02562 * 6 3 2 11 11 O 1.21278 * 120.00263 * 114.99855 * 10 6 3 12 12 N 1.34783 * 119.99670 * 295.00131 * 10 6 3 13 13 C 1.46500 * 119.99750 * 179.97438 * 12 10 6 14 14 C 1.52995 * 115.54614 * 179.97438 * 13 12 10 15 15 C 1.53042 * 109.45213 * 274.38077 * 14 13 12 16 16 C 1.53184 * 109.31733 * 181.38069 * 15 14 13 17 17 N 1.46926 * 108.77662 * 305.36921 * 16 15 14 18 18 C 1.36945 * 120.63247 * 233.58523 * 17 16 15 19 19 H 1.08003 * 119.99538 * 27.69046 * 18 17 16 20 20 C 1.38804 * 119.99927 * 207.69116 * 18 17 16 21 21 N 1.31618 * 120.00488 * 17.36142 * 20 18 17 22 22 Si 1.86806 * 119.99788 * 197.36620 * 20 18 17 23 23 H 1.48498 * 109.46827 * 359.97438 * 22 20 18 24 24 H 1.48500 * 109.47161 * 120.00192 * 22 20 18 25 25 H 1.48493 * 109.47159 * 240.00031 * 22 20 18 26 26 C 1.46929 * 118.73924 * 53.60225 * 17 16 15 27 27 C 1.53037 * 109.46365 * 34.44251 * 14 13 12 28 28 C 1.52993 * 117.50071 * 325.67141 * 13 12 10 29 29 C 1.53004 * 117.49832 * 34.33103 * 13 12 10 30 30 H 1.09004 * 109.47243 * 299.99753 * 1 2 3 31 31 H 1.08994 * 109.47610 * 59.99514 * 1 2 3 32 32 H 1.09007 * 109.47324 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46905 * 240.00829 * 2 1 3 34 34 H 1.09001 * 109.47361 * 120.00228 * 2 1 3 35 35 H 1.09003 * 109.46413 * 299.99732 * 5 3 2 36 36 H 1.08998 * 109.46816 * 59.99713 * 5 3 2 37 37 H 1.08995 * 109.46729 * 180.02562 * 5 3 2 38 38 H 1.09002 * 109.46791 * 299.99832 * 9 8 6 39 39 H 1.09004 * 109.46844 * 59.99230 * 9 8 6 40 40 H 1.08993 * 109.46925 * 179.97438 * 9 8 6 41 41 H 0.96996 * 119.99699 * 359.97438 * 12 10 6 42 42 H 1.09004 * 109.46084 * 154.41956 * 14 13 12 43 43 H 1.09000 * 109.49982 * 301.33488 * 15 14 13 44 44 H 1.09008 * 109.49484 * 61.42896 * 15 14 13 45 45 H 1.09003 * 109.59057 * 185.58194 * 16 15 14 46 46 H 1.09001 * 109.58867 * 65.15082 * 16 15 14 47 47 H 0.97003 * 120.00197 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.58690 * 186.60588 * 26 17 16 49 49 H 1.09002 * 109.58449 * 66.18664 * 26 17 16 50 50 H 1.08997 * 109.50227 * 298.58195 * 27 14 13 51 51 H 1.09007 * 109.49301 * 58.64576 * 27 14 13 52 52 H 1.09000 * 117.49992 * 215.00554 * 28 13 12 53 53 H 1.09008 * 117.49900 * 0.02562 * 28 13 12 54 54 H 1.08995 * 117.49865 * 359.97215 * 29 13 12 55 55 H 1.09002 * 117.49424 * 144.97407 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9817 -0.8417 5 6 1.6352 2.1265 1.3075 6 6 3.5648 1.4445 -0.1258 7 1 3.8531 0.9571 -1.0571 8 8 4.1346 0.7377 0.9778 9 6 5.3746 0.0938 0.6779 10 6 4.0671 2.8652 -0.1251 11 8 4.7644 3.2615 0.7846 12 7 3.7414 3.6956 -1.1356 13 6 4.2293 5.0770 -1.1348 14 6 3.7990 5.9294 -2.3301 15 6 4.7756 5.7129 -3.4884 16 6 4.3618 6.5936 -4.6714 17 7 2.9590 6.3105 -5.0040 18 6 2.5996 5.9693 -6.2806 19 1 3.3106 5.4785 -6.9288 20 6 1.3218 6.2544 -6.7416 21 7 0.5749 7.1343 -6.1089 22 14 0.6619 5.3890 -8.2599 23 1 1.6901 4.4537 -8.7826 24 1 -0.5635 4.6296 -7.9035 25 1 0.3347 6.3962 -9.3008 26 6 1.9488 6.4007 -3.9408 27 6 2.3897 5.5220 -2.7660 28 6 4.3677 5.7764 0.2189 29 6 5.6179 5.3354 -0.5464 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8932 -0.5137 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 0.5489 2.1252 1.3970 36 1 2.0699 1.5874 2.1492 37 1 1.9981 3.1543 1.3072 38 1 5.2239 -0.6292 -0.1238 39 1 6.1041 0.8396 0.3622 40 1 5.7415 -0.4197 1.5665 41 1 3.1840 3.3785 -1.8634 42 1 3.8011 6.9816 -2.0454 43 1 5.7829 5.9811 -3.1700 44 1 4.7556 4.6655 -3.7901 45 1 4.9933 6.3707 -5.5315 46 1 4.4681 7.6439 -4.3999 47 1 -0.3180 7.3338 -6.4313 48 1 0.9883 6.0506 -4.3187 49 1 1.8583 7.4353 -3.6096 50 1 2.3922 4.4766 -3.0744 51 1 1.6990 5.6540 -1.9331 52 1 4.1518 6.8441 0.2581 53 1 4.0961 5.2087 1.1089 54 1 6.1681 4.4777 -0.1596 55 1 6.2246 6.1127 -1.0110 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734607445.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:13:54 Heat of formation + Delta-G solvation = -63.266563 kcal Electronic energy + Delta-G solvation = -31932.934214 eV Core-core repulsion = 27970.373084 eV Total energy + Delta-G solvation = -3962.561130 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.82991 -40.00284 -38.67793 -37.19402 -36.64430 -34.54769 -34.07862 -32.16988 -31.35723 -31.13057 -28.54663 -27.44025 -27.03284 -25.26170 -24.36121 -24.01278 -22.98979 -22.04221 -21.33612 -20.88014 -20.15960 -18.86297 -18.57135 -17.69970 -16.99047 -16.82552 -16.49149 -16.06091 -15.76193 -15.59737 -15.32351 -15.28195 -14.95728 -14.82997 -14.61646 -14.57353 -14.42425 -14.25014 -14.00346 -13.88449 -13.12983 -13.02142 -12.95608 -12.89892 -12.71294 -12.61018 -12.52147 -12.33307 -12.19937 -12.15983 -11.99317 -11.87364 -11.78102 -11.76479 -11.68382 -11.48151 -11.44910 -11.34590 -11.11336 -10.88335 -10.50931 -10.12900 -9.55349 -8.64933 -7.84514 -5.28995 1.47799 1.50602 1.51194 1.60294 1.99045 2.53796 2.78814 2.96521 3.29672 3.48580 3.60239 3.70781 3.74405 3.81639 3.92871 4.02043 4.05854 4.20080 4.27580 4.35365 4.45301 4.49280 4.51288 4.54172 4.60633 4.62710 4.69541 4.70954 4.76340 4.76441 4.81351 4.82523 4.95515 5.01765 5.03061 5.03821 5.14033 5.19071 5.19890 5.22922 5.25127 5.27651 5.35629 5.39628 5.47047 5.52574 5.55191 5.62996 5.68688 5.80093 6.01207 6.42349 6.55158 7.18638 7.22138 7.90287 8.41497 9.21725 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.011067 B = 0.003457 C = 0.002928 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2529.327276 B = 8096.901965 C = 9561.446761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.109 4.109 3 C -0.081 4.081 4 H 0.093 0.907 5 C -0.140 4.140 6 C 0.079 3.921 7 H 0.105 0.895 8 O -0.368 6.368 9 C 0.025 3.975 10 C 0.491 3.509 11 O -0.555 6.555 12 N -0.684 5.684 13 C 0.112 3.888 14 C -0.033 4.033 15 C -0.110 4.110 16 C 0.140 3.860 17 N -0.609 5.609 18 C -0.259 4.259 19 H 0.066 0.934 20 C -0.048 4.048 21 N -0.934 5.934 22 Si 0.962 3.038 23 H -0.267 1.267 24 H -0.289 1.289 25 H -0.296 1.296 26 C 0.178 3.822 27 C -0.117 4.117 28 C -0.178 4.178 29 C -0.170 4.170 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.033 0.967 38 H 0.062 0.938 39 H 0.030 0.970 40 H 0.100 0.900 41 H 0.411 0.589 42 H 0.076 0.924 43 H 0.076 0.924 44 H 0.056 0.944 45 H 0.052 0.948 46 H 0.012 0.988 47 H 0.249 0.751 48 H 0.055 0.945 49 H -0.007 1.007 50 H 0.059 0.941 51 H 0.064 0.936 52 H 0.101 0.899 53 H 0.089 0.911 54 H 0.090 0.910 55 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.367 -14.165 13.452 20.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.146 4.146 3 C -0.100 4.100 4 H 0.111 0.889 5 C -0.197 4.197 6 C 0.018 3.982 7 H 0.122 0.878 8 O -0.285 6.285 9 C -0.071 4.071 10 C 0.278 3.722 11 O -0.433 6.433 12 N -0.336 5.336 13 C 0.025 3.975 14 C -0.052 4.052 15 C -0.149 4.149 16 C 0.015 3.985 17 N -0.333 5.333 18 C -0.390 4.390 19 H 0.083 0.917 20 C -0.244 4.244 21 N -0.581 5.581 22 Si 0.791 3.209 23 H -0.191 1.191 24 H -0.215 1.215 25 H -0.223 1.223 26 C 0.053 3.947 27 C -0.156 4.156 28 C -0.216 4.216 29 C -0.208 4.208 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.074 0.926 37 H 0.052 0.948 38 H 0.081 0.919 39 H 0.049 0.951 40 H 0.118 0.882 41 H 0.249 0.751 42 H 0.094 0.906 43 H 0.095 0.905 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.030 0.970 47 H 0.058 0.942 48 H 0.074 0.926 49 H 0.011 0.989 50 H 0.078 0.922 51 H 0.083 0.917 52 H 0.119 0.881 53 H 0.108 0.892 54 H 0.109 0.891 55 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 5.639 -13.887 14.230 20.667 hybrid contribution -0.559 0.093 -1.353 1.467 sum 5.080 -13.794 12.877 19.542 Atomic orbital electron populations 1.21830 0.95113 1.02190 1.02044 1.21449 0.96290 0.94096 1.02786 1.21323 0.89874 0.99012 0.99765 0.88911 1.21743 1.01773 0.98996 0.97185 1.22240 0.95513 0.88193 0.92266 0.87757 1.87960 1.37805 1.67599 1.35159 1.22989 0.84966 0.96150 1.03007 1.21765 0.79979 0.89071 0.81366 1.90641 1.38711 1.77298 1.36635 1.45470 1.52687 1.10280 1.25182 1.20705 0.98988 0.82970 0.94851 1.20619 0.95233 0.97761 0.91561 1.21885 0.98239 1.00116 0.94648 1.21058 0.85620 0.95630 0.96224 1.44337 1.02872 1.80439 1.05632 1.19535 0.97929 1.30642 0.90870 0.91653 1.25724 0.99418 0.98335 1.00902 1.70191 1.10488 1.34044 1.43348 0.85282 0.78171 0.78040 0.79403 1.19103 1.21542 1.22339 1.20568 0.92924 0.94483 0.86773 1.21967 0.95774 0.99946 0.97929 1.23381 1.02347 1.00335 0.95550 1.23294 0.91017 1.03360 1.03134 0.92554 0.92645 0.91906 0.91038 0.91489 0.91058 0.92627 0.94827 0.91916 0.95125 0.88201 0.75096 0.90583 0.90530 0.92510 0.92916 0.96991 0.94198 0.92631 0.98898 0.92203 0.91741 0.88083 0.89242 0.89115 0.87680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 9.67 71.98 0.70 -1.46 16 2 C -0.11 -1.61 5.19 30.59 0.16 -1.45 16 3 C -0.08 -1.44 2.24 -10.79 -0.02 -1.47 16 4 H 0.09 1.56 7.93 -2.39 -0.02 1.54 16 5 C -0.14 -2.88 8.56 71.98 0.62 -2.27 16 6 C 0.08 1.59 2.26 29.85 0.07 1.66 16 7 H 0.10 1.64 7.79 -2.39 -0.02 1.63 16 8 O -0.37 -8.07 8.63 -129.98 -1.12 -9.20 16 9 C 0.02 0.42 10.81 113.37 1.23 1.65 16 10 C 0.49 12.50 5.57 87.66 0.49 12.99 16 11 O -0.55 -17.62 11.99 15.97 0.19 -17.43 16 12 N -0.68 -16.75 5.35 -422.93 -2.26 -19.02 16 13 C 0.11 3.01 2.48 3.60 0.01 3.02 16 14 C -0.03 -0.97 2.28 -10.77 -0.02 -0.99 16 15 C -0.11 -3.39 5.22 30.67 0.16 -3.23 16 16 C 0.14 5.51 6.52 86.36 0.56 6.08 16 17 N -0.61 -29.19 3.00 -699.10 -2.09 -31.29 16 18 C -0.26 -13.79 9.59 84.03 0.81 -12.98 16 19 H 0.07 3.40 7.89 -2.91 -0.02 3.38 16 20 C -0.05 -2.62 4.91 84.86 0.42 -2.21 16 21 N -0.93 -53.96 11.19 21.65 0.24 -53.71 16 22 Si 0.96 43.53 29.59 68.60 2.03 45.56 16 23 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 24 H -0.29 -12.94 7.11 99.48 0.71 -12.24 16 25 H -0.30 -13.57 7.11 99.48 0.71 -12.86 16 26 C 0.18 8.14 5.31 86.36 0.46 8.59 16 27 C -0.12 -3.94 4.83 30.67 0.15 -3.79 16 28 C -0.18 -4.87 9.37 30.62 0.29 -4.58 16 29 C -0.17 -4.51 8.91 30.62 0.27 -4.23 16 30 H 0.06 0.80 6.57 -2.39 -0.02 0.78 16 31 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 33 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 34 H 0.07 1.07 7.84 -2.39 -0.02 1.05 16 35 H 0.07 1.27 6.56 -2.39 -0.02 1.25 16 36 H 0.05 1.24 7.68 -2.39 -0.02 1.22 16 37 H 0.03 0.82 7.22 -2.39 -0.02 0.80 16 38 H 0.06 0.77 8.09 -2.39 -0.02 0.75 16 39 H 0.03 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.41 9.18 6.44 -92.71 -0.60 8.58 16 42 H 0.08 2.35 7.90 -2.38 -0.02 2.33 16 43 H 0.08 2.03 7.24 -2.39 -0.02 2.01 16 44 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 45 H 0.05 2.05 7.93 -2.39 -0.02 2.03 16 46 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 47 H 0.25 13.94 8.31 -92.71 -0.77 13.17 16 48 H 0.06 2.90 6.04 -2.39 -0.01 2.88 16 49 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 50 H 0.06 1.92 6.50 -2.39 -0.02 1.90 16 51 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 52 H 0.10 2.53 8.05 -2.39 -0.02 2.51 16 53 H 0.09 2.77 6.38 -2.38 -0.02 2.76 16 54 H 0.09 2.69 6.37 -2.39 -0.02 2.68 16 55 H 0.10 2.49 7.60 -2.39 -0.02 2.47 16 Total: -1.00 -65.19 414.34 3.57 -61.62 By element: Atomic # 1 Polarization: 27.90 SS G_CDS: 0.26 Total: 28.16 kcal Atomic # 6 Polarization: -11.01 SS G_CDS: 6.32 Total: -4.69 kcal Atomic # 7 Polarization: -99.90 SS G_CDS: -4.11 Total: -104.02 kcal Atomic # 8 Polarization: -25.70 SS G_CDS: -0.93 Total: -26.63 kcal Atomic # 14 Polarization: 43.53 SS G_CDS: 2.03 Total: 45.56 kcal Total: -65.19 3.57 -61.62 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734607445.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.649 kcal (2) G-P(sol) polarization free energy of solvation -65.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds