Wall clock time and date at job start Tue Mar 31 2020 22:09:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53005 * 109.47524 * 2 1 4 4 H 1.08995 * 109.48188 * 55.02783 * 3 2 1 5 5 C 1.53084 * 109.48120 * 175.05927 * 3 2 1 6 6 C 1.53181 * 109.16634 * 62.37592 * 5 3 2 7 7 H 1.09000 * 109.61282 * 297.07348 * 6 5 3 8 8 C 1.52997 * 109.54563 * 176.84547 * 6 5 3 9 9 C 1.50690 * 109.47248 * 175.44282 * 8 6 5 10 10 O 1.21284 * 120.00251 * 0.02562 * 9 8 6 11 11 N 1.34776 * 120.00366 * 180.02562 * 9 8 6 12 12 C 1.46497 * 120.00410 * 180.27775 * 11 9 8 13 13 C 1.53004 * 109.46033 * 59.75037 * 12 11 9 14 14 C 1.53044 * 109.45972 * 299.79542 * 12 11 9 15 15 C 1.53194 * 109.30873 * 301.33907 * 14 12 11 16 16 N 1.46920 * 108.77730 * 305.36784 * 15 14 12 17 17 C 1.36943 * 120.62920 * 233.62718 * 16 15 14 18 18 H 1.07996 * 119.99351 * 27.66216 * 17 16 15 19 19 C 1.38808 * 120.00072 * 207.66100 * 17 16 15 20 20 N 1.31621 * 120.00069 * 17.37388 * 19 17 16 21 21 Si 1.86798 * 120.00185 * 197.37499 * 19 17 16 22 22 H 1.48504 * 109.46780 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47386 * 119.99730 * 21 19 17 24 24 H 1.48499 * 109.47277 * 240.00214 * 21 19 17 25 25 C 1.46932 * 118.74097 * 53.60926 * 16 15 14 26 26 C 1.53041 * 109.46160 * 179.72230 * 12 11 9 27 27 C 1.53180 * 109.03409 * 56.97837 * 6 5 3 28 28 C 1.53097 * 109.16346 * 303.02080 * 27 6 5 29 29 O 1.42898 * 109.41361 * 57.60804 * 28 27 6 30 30 H 1.09008 * 109.47416 * 59.99624 * 1 2 3 31 31 H 1.09003 * 109.47591 * 180.02562 * 1 2 3 32 32 H 1.09006 * 109.47294 * 299.99680 * 1 2 3 33 33 H 1.09006 * 109.47294 * 240.00319 * 2 1 3 34 34 H 1.08994 * 109.47303 * 120.00420 * 2 1 3 35 35 H 1.09007 * 109.52201 * 302.46868 * 5 3 2 36 36 H 1.08998 * 109.52042 * 182.28128 * 5 3 2 37 37 H 1.09003 * 109.46850 * 55.44525 * 8 6 5 38 38 H 1.09001 * 109.46734 * 295.44671 * 8 6 5 39 39 H 0.96998 * 119.99496 * 359.97438 * 11 9 8 40 40 H 1.08998 * 109.46935 * 59.99938 * 13 12 11 41 41 H 1.08997 * 109.47130 * 180.02562 * 13 12 11 42 42 H 1.09000 * 109.47552 * 300.00275 * 13 12 11 43 43 H 1.08997 * 109.49815 * 61.29073 * 14 12 11 44 44 H 1.09004 * 109.49711 * 181.39205 * 14 12 11 45 45 H 1.08996 * 109.58500 * 185.57712 * 15 14 12 46 46 H 1.08999 * 109.58081 * 65.15536 * 15 14 12 47 47 H 0.97003 * 120.00270 * 179.97438 * 20 19 17 48 48 H 1.08999 * 109.58450 * 186.60446 * 25 16 15 49 49 H 1.09003 * 109.58287 * 66.17754 * 25 16 15 50 50 H 1.09005 * 109.49796 * 178.60498 * 26 12 11 51 51 H 1.09001 * 109.49681 * 298.70533 * 26 12 11 52 52 H 1.08995 * 109.52003 * 62.92351 * 27 6 5 53 53 H 1.08996 * 109.52023 * 183.11452 * 27 6 5 54 54 H 1.09002 * 109.47790 * 177.59184 * 28 27 6 55 55 H 1.08994 * 109.48050 * 297.62779 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6060 1.9816 0.8420 5 6 3.5658 1.4445 0.1243 6 6 4.1704 0.7377 -1.0928 7 1 3.8506 -0.3042 -1.1071 8 6 5.6971 0.8035 -1.0168 9 6 6.2912 0.0128 -2.1538 10 8 5.5651 -0.5479 -2.9471 11 7 7.6295 -0.0714 -2.2891 12 6 8.2070 -0.8351 -3.3979 13 6 7.7328 -0.2426 -4.7265 14 6 7.7564 -2.2945 -3.3011 15 6 8.2030 -2.8744 -1.9553 16 7 9.6523 -2.6797 -1.8141 17 6 10.4745 -3.7385 -1.5343 18 1 10.1946 -4.7353 -1.8415 19 6 11.6676 -3.5305 -0.8561 20 7 11.8585 -2.4129 -0.1877 21 14 13.0024 -4.8368 -0.8920 22 1 12.5439 -5.9908 -1.7065 23 1 14.2365 -4.2673 -1.4902 24 1 13.2877 -5.2912 0.4927 25 6 10.2030 -1.3275 -1.9790 26 6 9.7341 -0.7650 -3.3245 27 6 3.6901 1.4387 -2.3673 28 6 2.1594 1.4369 -2.3953 29 8 1.6620 2.0816 -1.2210 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 3.8579 0.9185 1.0333 36 1 3.9266 2.4722 0.1651 37 1 6.0321 0.3838 -0.0683 38 1 6.0199 1.8421 -1.0888 39 1 8.2102 0.3773 -1.6549 40 1 8.0530 0.7970 -4.7955 41 1 8.1621 -0.8110 -5.5516 42 1 6.6452 -0.2920 -4.7788 43 1 6.6702 -2.3457 -3.3769 44 1 8.2056 -2.8685 -4.1116 45 1 7.9722 -3.9391 -1.9216 46 1 7.6846 -2.3603 -1.1460 47 1 12.6921 -2.2677 0.2866 48 1 11.2919 -1.3717 -1.9610 49 1 9.8477 -0.6873 -1.1715 50 1 10.1647 -1.3534 -4.1348 51 1 10.0555 0.2725 -3.4170 52 1 4.0533 2.4663 -2.3767 53 1 4.0710 0.9086 -3.2401 54 1 1.8114 1.9721 -3.2789 55 1 1.7976 0.4092 -2.4267 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754630966.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:09:50 Heat of formation + Delta-G solvation = -100.748499 kcal Electronic energy + Delta-G solvation = -31758.079509 eV Core-core repulsion = 27793.893040 eV Total energy + Delta-G solvation = -3964.186468 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -41.60135 -40.69150 -38.87917 -36.20528 -35.37869 -34.30550 -33.68464 -32.49235 -31.60541 -31.07610 -29.50656 -29.03911 -25.94499 -25.14120 -24.40061 -23.94144 -23.28642 -22.52771 -21.38006 -20.14015 -19.95926 -18.77177 -18.01155 -17.38718 -16.85060 -16.80347 -16.60747 -16.08337 -15.86780 -15.61540 -15.48222 -15.28413 -14.99179 -14.79372 -14.49840 -14.43525 -14.12096 -14.09434 -13.67269 -13.55427 -13.28558 -13.15506 -13.08094 -12.91759 -12.82732 -12.69613 -12.59642 -12.54050 -12.42359 -12.14931 -12.11380 -11.97953 -11.86507 -11.75884 -11.66088 -11.50280 -11.29406 -11.24242 -10.91323 -10.54307 -10.40335 -10.14944 -9.81803 -8.65982 -7.88218 -5.31683 1.44785 1.47707 1.57370 1.83899 2.37876 2.50868 2.99638 3.26443 3.65628 3.72500 3.77526 3.83198 3.87852 4.00493 4.06315 4.08805 4.16662 4.24670 4.35519 4.44348 4.45000 4.49213 4.53994 4.64208 4.66626 4.68604 4.74352 4.80445 4.83352 4.90071 4.91853 4.91941 4.92265 4.96689 5.01153 5.05867 5.12745 5.16106 5.18453 5.24046 5.29484 5.30360 5.37511 5.40057 5.41898 5.49675 5.50862 5.63933 5.73871 5.82181 6.36920 6.39169 6.77955 7.15887 7.45735 7.86350 8.37799 9.17571 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018791 B = 0.002608 C = 0.002466 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.754688 B =10732.995616 C =11350.355075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.159 4.159 3 C 0.089 3.911 4 H 0.112 0.888 5 C -0.141 4.141 6 C -0.067 4.067 7 H 0.064 0.936 8 C -0.133 4.133 9 C 0.512 3.488 10 O -0.565 6.565 11 N -0.712 5.712 12 C 0.188 3.812 13 C -0.149 4.149 14 C -0.129 4.129 15 C 0.154 3.846 16 N -0.606 5.606 17 C -0.263 4.263 18 H 0.058 0.942 19 C -0.045 4.045 20 N -0.929 5.929 21 Si 0.962 3.038 22 H -0.272 1.272 23 H -0.288 1.288 24 H -0.292 1.292 25 C 0.179 3.821 26 C -0.132 4.132 27 C -0.147 4.147 28 C 0.060 3.940 29 O -0.390 6.390 30 H 0.049 0.951 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.077 0.923 37 H 0.100 0.900 38 H 0.110 0.890 39 H 0.404 0.596 40 H 0.062 0.938 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.056 0.944 45 H 0.038 0.962 46 H 0.010 0.990 47 H 0.250 0.750 48 H 0.055 0.945 49 H 0.010 0.990 50 H 0.064 0.936 51 H 0.080 0.920 52 H 0.066 0.934 53 H 0.075 0.925 54 H 0.097 0.903 55 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.292 11.356 -1.941 20.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.197 4.197 3 C 0.032 3.968 4 H 0.130 0.870 5 C -0.179 4.179 6 C -0.086 4.086 7 H 0.082 0.918 8 C -0.173 4.173 9 C 0.301 3.699 10 O -0.445 6.445 11 N -0.364 5.364 12 C 0.102 3.898 13 C -0.207 4.207 14 C -0.169 4.169 15 C 0.029 3.971 16 N -0.330 5.330 17 C -0.393 4.393 18 H 0.076 0.924 19 C -0.241 4.241 20 N -0.575 5.575 21 Si 0.791 3.209 22 H -0.197 1.197 23 H -0.214 1.214 24 H -0.219 1.219 25 C 0.054 3.946 26 C -0.172 4.172 27 C -0.185 4.185 28 C -0.017 4.017 29 O -0.309 6.309 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.096 0.904 37 H 0.118 0.882 38 H 0.128 0.872 39 H 0.239 0.761 40 H 0.081 0.919 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.027 0.973 47 H 0.060 0.940 48 H 0.073 0.927 49 H 0.028 0.972 50 H 0.082 0.918 51 H 0.098 0.902 52 H 0.084 0.916 53 H 0.093 0.907 54 H 0.115 0.885 55 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -17.779 11.143 -2.424 21.122 hybrid contribution 1.544 -1.007 0.482 1.906 sum -16.234 10.136 -1.942 19.237 Atomic orbital electron populations 1.21678 0.94873 1.01626 1.02100 1.22194 0.97237 0.97338 1.02889 1.22319 0.93829 0.93340 0.87343 0.87024 1.22248 0.95634 1.01860 0.98145 1.20865 0.92637 0.99821 0.95244 0.91800 1.21770 0.96432 1.01826 0.97248 1.21016 0.81848 0.80564 0.86509 1.90560 1.60415 1.47906 1.45574 1.46192 1.06906 1.52838 1.30415 1.20100 0.92526 0.90333 0.86803 1.22096 1.02350 1.00712 0.95527 1.22221 1.00884 0.95689 0.98113 1.20828 0.84434 0.97281 0.94583 1.44275 1.01401 1.05150 1.82172 1.19471 1.01237 0.89185 1.29446 0.92408 1.25673 1.01953 0.99435 0.97024 1.70151 1.25455 1.27650 1.34201 0.85289 0.79482 0.79172 0.76976 1.19664 1.21414 1.21948 1.20586 0.98067 0.84082 0.91875 1.22329 0.93688 1.01274 0.99887 1.22247 0.96425 1.00795 0.99003 1.22570 0.93204 0.97799 0.88104 1.87932 1.75005 1.53682 1.14291 0.93152 0.92591 0.91949 0.92255 0.90316 0.89760 0.90392 0.88198 0.87179 0.76078 0.91915 0.91786 0.91750 0.90937 0.92542 0.94372 0.97256 0.94038 0.92682 0.97241 0.91767 0.90185 0.91570 0.90671 0.88498 0.93303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.21 9.81 71.98 0.71 -1.51 16 2 C -0.16 -2.63 4.74 30.59 0.15 -2.49 16 3 C 0.09 1.48 3.29 30.62 0.10 1.58 16 4 H 0.11 1.57 8.14 -2.39 -0.02 1.55 16 5 C -0.14 -2.27 4.92 30.68 0.15 -2.11 16 6 C -0.07 -1.34 1.61 -10.67 -0.02 -1.35 16 7 H 0.06 1.53 6.56 -2.39 -0.02 1.51 16 8 C -0.13 -2.69 5.18 29.84 0.15 -2.54 16 9 C 0.51 13.98 6.99 87.65 0.61 14.59 16 10 O -0.56 -18.09 10.19 -3.04 -0.03 -18.12 16 11 N -0.71 -20.27 4.10 -422.80 -1.73 -22.00 16 12 C 0.19 5.95 0.66 3.63 0.00 5.95 16 13 C -0.15 -4.10 8.40 71.98 0.60 -3.50 16 14 C -0.13 -4.71 4.67 30.67 0.14 -4.57 16 15 C 0.15 6.65 6.26 86.36 0.54 7.19 16 16 N -0.61 -29.83 2.99 -699.11 -2.09 -31.92 16 17 C -0.26 -14.43 9.58 84.03 0.81 -13.63 16 18 H 0.06 3.18 7.89 -2.91 -0.02 3.16 16 19 C -0.05 -2.47 4.91 84.86 0.42 -2.06 16 20 N -0.93 -52.93 11.19 21.65 0.24 -52.69 16 21 Si 0.96 44.39 29.59 68.60 2.03 46.42 16 22 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 23 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 24 H -0.29 -13.50 7.11 99.48 0.71 -12.79 16 25 C 0.18 8.01 5.04 86.36 0.44 8.45 16 26 C -0.13 -4.56 4.96 30.67 0.15 -4.41 16 27 C -0.15 -3.05 5.12 30.69 0.16 -2.89 16 28 C 0.06 1.17 6.52 72.01 0.47 1.64 16 29 O -0.39 -7.97 10.13 -148.98 -1.51 -9.48 16 30 H 0.05 0.85 7.82 -2.38 -0.02 0.83 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 33 H 0.06 1.16 4.98 -2.38 -0.01 1.15 16 34 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 36 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.10 1.92 8.14 -2.39 -0.02 1.90 16 38 H 0.11 1.79 8.14 -2.39 -0.02 1.77 16 39 H 0.40 10.84 7.27 -92.71 -0.67 10.16 16 40 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.06 1.93 6.16 -2.39 -0.01 1.91 16 43 H 0.07 2.67 6.21 -2.39 -0.01 2.66 16 44 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.04 1.68 7.93 -2.39 -0.02 1.66 16 46 H 0.01 0.42 7.74 -2.39 -0.02 0.40 16 47 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 48 H 0.05 2.84 6.03 -2.39 -0.01 2.83 16 49 H 0.01 0.43 6.94 -2.39 -0.02 0.42 16 50 H 0.06 2.31 8.14 -2.38 -0.02 2.29 16 51 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 52 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 53 H 0.07 1.88 6.03 -2.39 -0.01 1.86 16 54 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 55 H 0.05 0.99 6.23 -2.39 -0.01 0.98 16 Total: -1.00 -63.09 400.41 2.67 -60.42 By element: Atomic # 1 Polarization: 28.83 SS G_CDS: 0.19 Total: 29.02 kcal Atomic # 6 Polarization: -7.23 SS G_CDS: 5.58 Total: -1.65 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -3.58 Total: -106.61 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -1.54 Total: -27.61 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -63.09 2.67 -60.42 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754630966.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.333 kcal (2) G-P(sol) polarization free energy of solvation -63.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.43 seconds