Wall clock time and date at job start Tue Mar 31 2020 22:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.52996 * 109.47263 * 2 1 4 4 H 1.08998 * 109.47791 * 304.97702 * 3 2 1 5 5 C 1.53089 * 109.47916 * 184.94526 * 3 2 1 6 6 C 1.53180 * 109.15922 * 182.40926 * 5 3 2 7 7 H 1.09006 * 109.54194 * 176.84573 * 6 5 3 8 8 C 1.52997 * 109.54389 * 297.10531 * 6 5 3 9 9 C 1.50702 * 109.47186 * 184.55735 * 8 6 5 10 10 O 1.21273 * 120.00099 * 0.02562 * 9 8 6 11 11 N 1.34778 * 119.99791 * 180.02562 * 9 8 6 12 12 C 1.46496 * 120.00046 * 180.02562 * 11 9 8 13 13 C 1.53006 * 109.46058 * 60.02707 * 12 11 9 14 14 C 1.53047 * 109.46186 * 300.07234 * 12 11 9 15 15 C 1.53197 * 109.30775 * 301.34334 * 14 12 11 16 16 N 1.46928 * 108.77532 * 305.36250 * 15 14 12 17 17 C 1.36937 * 120.63194 * 233.63300 * 16 15 14 18 18 H 1.08001 * 119.99858 * 27.66008 * 17 16 15 19 19 C 1.38811 * 120.00147 * 207.66761 * 17 16 15 20 20 N 1.31620 * 119.99895 * 17.35692 * 19 17 16 21 21 Si 1.86801 * 120.00168 * 197.36082 * 19 17 16 22 22 H 1.48502 * 109.47045 * 89.99674 * 21 19 17 23 23 H 1.48492 * 109.47184 * 209.99602 * 21 19 17 24 24 H 1.48497 * 109.46776 * 329.99877 * 21 19 17 25 25 C 1.46925 * 118.73870 * 53.60840 * 16 15 14 26 26 C 1.53043 * 109.46454 * 180.02562 * 12 11 9 27 27 C 1.53171 * 109.04096 * 56.97792 * 6 5 3 28 28 C 1.53090 * 109.16509 * 303.02020 * 27 6 5 29 29 O 1.42899 * 109.48291 * 64.99736 * 3 2 1 30 30 H 1.08998 * 109.46699 * 300.00541 * 1 2 3 31 31 H 1.09000 * 109.46738 * 60.00125 * 1 2 3 32 32 H 1.08998 * 109.47059 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46966 * 239.99925 * 2 1 3 34 34 H 1.09000 * 109.46738 * 119.99875 * 2 1 3 35 35 H 1.08998 * 109.52525 * 62.50276 * 5 3 2 36 36 H 1.08998 * 109.52190 * 302.30788 * 5 3 2 37 37 H 1.09002 * 109.47454 * 304.56149 * 8 6 5 38 38 H 1.09005 * 109.46871 * 64.56340 * 8 6 5 39 39 H 0.96999 * 119.99946 * 0.02562 * 11 9 8 40 40 H 1.09001 * 109.47310 * 60.00163 * 13 12 11 41 41 H 1.09003 * 109.47359 * 180.02562 * 13 12 11 42 42 H 1.08997 * 109.46963 * 300.00142 * 13 12 11 43 43 H 1.09000 * 109.49965 * 61.28764 * 14 12 11 44 44 H 1.09000 * 109.50176 * 181.39224 * 14 12 11 45 45 H 1.08998 * 109.58354 * 185.57706 * 15 14 12 46 46 H 1.08997 * 109.58918 * 65.15010 * 15 14 12 47 47 H 0.97002 * 119.99831 * 180.02562 * 20 19 17 48 48 H 1.08994 * 109.59008 * 186.60215 * 25 16 15 49 49 H 1.09010 * 109.58693 * 66.17972 * 25 16 15 50 50 H 1.09002 * 109.49992 * 178.60554 * 26 12 11 51 51 H 1.08996 * 109.49349 * 298.70198 * 26 12 11 52 52 H 1.09001 * 109.52034 * 62.92468 * 27 6 5 53 53 H 1.09001 * 109.52549 * 183.04839 * 27 6 5 54 54 H 1.08992 * 109.48212 * 177.59156 * 28 27 6 55 55 H 1.09001 * 109.47518 * 297.61721 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6059 1.9815 -0.8420 5 6 3.5660 1.4444 -0.1244 6 6 4.0735 2.8884 -0.0631 7 1 5.1631 2.8936 -0.0948 8 6 3.5214 3.6759 -1.2530 9 6 4.1098 5.0633 -1.2537 10 8 4.8939 5.3899 -0.3881 11 7 3.7646 5.9412 -2.2164 12 6 4.3370 7.2897 -2.2174 13 6 5.8600 7.1969 -2.3311 14 6 3.9658 8.0022 -0.9148 15 6 2.4403 8.0628 -0.7875 16 7 1.8895 8.6901 -1.9966 17 6 1.0503 9.7681 -1.9029 18 1 1.1214 10.4358 -1.0570 19 6 0.1081 10.0026 -2.8950 20 7 -0.2204 9.0407 -3.7311 21 14 -0.6933 11.6835 -3.0435 22 1 0.1124 12.5374 -3.9529 23 1 -2.0644 11.5313 -3.5928 24 1 -0.7647 12.3179 -1.7027 25 6 2.2565 8.1390 -3.3082 26 6 3.7835 8.0777 -3.4069 27 6 3.5959 3.5309 1.2427 28 6 2.0689 3.4484 1.3143 29 8 1.6622 2.0816 1.2209 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 3.8545 0.9970 -1.0755 36 1 3.9990 0.8711 0.6952 37 1 3.7875 3.1679 -2.1799 38 1 2.4362 3.7416 -1.1732 39 1 3.1372 5.6800 -2.9085 40 1 6.1249 6.6890 -3.2585 41 1 6.2861 8.2002 -2.3315 42 1 6.2540 6.6355 -1.4840 43 1 4.3798 7.4532 -0.0691 44 1 4.3705 9.0142 -0.9256 45 1 2.1699 8.6548 0.0868 46 1 2.0417 7.0535 -0.6855 47 1 -0.8785 9.2047 -4.4246 48 1 1.8648 8.7811 -4.0970 49 1 1.8429 7.1357 -3.4118 50 1 4.1899 9.0890 -3.3942 51 1 4.0679 7.5824 -4.3353 52 1 4.0295 2.9997 2.0899 53 1 3.9068 4.5753 1.2698 54 1 1.7263 3.8657 2.2611 55 1 1.6353 4.0139 0.4895 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754630969.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:10:06 Heat of formation + Delta-G solvation = -100.438098 kcal Electronic energy + Delta-G solvation = -32168.521622 eV Core-core repulsion = 28204.348614 eV Total energy + Delta-G solvation = -3964.173008 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.69423 -40.56724 -38.80701 -36.19767 -35.33959 -34.83863 -33.69438 -32.48723 -31.61163 -30.71794 -29.28437 -29.01166 -25.96351 -25.71063 -24.52664 -23.95086 -22.91432 -22.22472 -21.92653 -20.10462 -19.85081 -18.71552 -17.98589 -17.34038 -17.11536 -16.85198 -16.55005 -16.24513 -15.72140 -15.50241 -15.29543 -15.08671 -15.05824 -14.80359 -14.68820 -14.53801 -14.33446 -13.98155 -13.89870 -13.69240 -13.30412 -13.11205 -13.00378 -12.87953 -12.65367 -12.60788 -12.56249 -12.52169 -12.35774 -12.18427 -12.14601 -12.02931 -11.98014 -11.76266 -11.75826 -11.43509 -11.28803 -11.27293 -11.03203 -10.53915 -10.35468 -10.16111 -9.83349 -8.66169 -7.88087 -5.31727 1.46105 1.47808 1.55934 1.81201 2.36496 2.50984 2.89158 3.26515 3.62943 3.69740 3.76720 3.80224 3.90961 4.01192 4.05018 4.14256 4.16345 4.23889 4.25318 4.33215 4.47586 4.48772 4.52225 4.61995 4.64500 4.67579 4.74127 4.76234 4.78795 4.83465 4.90741 4.91984 4.96748 4.99730 5.02116 5.12956 5.16246 5.18839 5.20328 5.23996 5.26714 5.30398 5.35219 5.38846 5.39954 5.48392 5.49703 5.63755 5.73372 5.81236 6.36243 6.39053 6.76147 7.16001 7.43784 7.86400 8.37802 9.17495 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.012387 B = 0.003282 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2259.807862 B = 8528.726051 C = 9819.576622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C 0.079 3.921 4 H 0.057 0.943 5 C -0.136 4.136 6 C -0.065 4.065 7 H 0.077 0.923 8 C -0.139 4.139 9 C 0.514 3.486 10 O -0.563 6.563 11 N -0.712 5.712 12 C 0.188 3.812 13 C -0.149 4.149 14 C -0.130 4.130 15 C 0.155 3.845 16 N -0.606 5.606 17 C -0.265 4.265 18 H 0.058 0.942 19 C -0.043 4.043 20 N -0.928 5.928 21 Si 0.962 3.038 22 H -0.284 1.284 23 H -0.294 1.294 24 H -0.274 1.274 25 C 0.180 3.820 26 C -0.132 4.132 27 C -0.149 4.149 28 C 0.061 3.939 29 O -0.393 6.393 30 H 0.044 0.956 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.096 0.904 34 H 0.068 0.932 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.118 0.882 38 H 0.090 0.910 39 H 0.403 0.597 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.056 0.944 45 H 0.037 0.963 46 H 0.009 0.991 47 H 0.250 0.750 48 H 0.055 0.945 49 H 0.009 0.991 50 H 0.064 0.936 51 H 0.080 0.920 52 H 0.068 0.932 53 H 0.073 0.927 54 H 0.091 0.909 55 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.150 -17.374 2.696 19.820 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C 0.021 3.979 4 H 0.075 0.925 5 C -0.174 4.174 6 C -0.084 4.084 7 H 0.096 0.904 8 C -0.179 4.179 9 C 0.302 3.698 10 O -0.443 6.443 11 N -0.363 5.363 12 C 0.102 3.898 13 C -0.207 4.207 14 C -0.169 4.169 15 C 0.029 3.971 16 N -0.330 5.330 17 C -0.396 4.396 18 H 0.076 0.924 19 C -0.239 4.239 20 N -0.574 5.574 21 Si 0.791 3.209 22 H -0.211 1.211 23 H -0.220 1.220 24 H -0.199 1.199 25 C 0.054 3.946 26 C -0.172 4.172 27 C -0.187 4.187 28 C -0.015 4.015 29 O -0.313 6.313 30 H 0.063 0.937 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.114 0.886 34 H 0.087 0.913 35 H 0.113 0.887 36 H 0.093 0.907 37 H 0.136 0.864 38 H 0.108 0.892 39 H 0.239 0.761 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.082 0.918 43 H 0.091 0.909 44 H 0.075 0.925 45 H 0.056 0.944 46 H 0.027 0.973 47 H 0.060 0.940 48 H 0.073 0.927 49 H 0.027 0.973 50 H 0.082 0.918 51 H 0.099 0.901 52 H 0.086 0.914 53 H 0.091 0.909 54 H 0.109 0.891 55 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 9.477 -17.217 3.339 19.934 hybrid contribution -1.024 1.342 -0.532 1.770 sum 8.452 -15.875 2.807 18.203 Atomic orbital electron populations 1.21726 0.95737 1.01925 1.01499 1.21574 0.96316 0.93617 1.03491 1.22381 0.94281 0.94552 0.86641 0.92531 1.22222 0.95468 0.95642 1.04065 1.20848 1.00625 0.94127 0.92812 0.90444 1.21898 1.01915 0.92062 1.02004 1.20951 0.80947 0.87477 0.80463 1.90565 1.36520 1.79586 1.37630 1.46192 1.47231 1.12762 1.30124 1.20111 0.93185 0.81498 0.94988 1.22095 0.93783 1.02384 1.02416 1.22227 0.96694 0.99690 0.98324 1.20822 0.92477 0.94613 0.89144 1.44264 1.53252 1.34357 1.01098 1.19453 1.10462 1.01636 1.08005 0.92408 1.25657 0.97535 1.00595 1.00100 1.70146 1.34444 1.31640 1.21173 0.85350 0.77173 0.80537 0.77882 1.21107 1.22023 1.19915 1.20571 0.90405 0.95848 0.87742 1.22319 0.97871 0.99924 0.97045 1.22208 0.95743 1.02513 0.98213 1.22557 0.94506 0.82771 1.01708 1.87887 1.79028 1.24758 1.39594 0.93711 0.93006 0.91596 0.88607 0.91331 0.88655 0.90665 0.86386 0.89169 0.76110 0.91817 0.91755 0.91805 0.90893 0.92512 0.94414 0.97333 0.94046 0.92680 0.97326 0.91755 0.90138 0.91368 0.90865 0.89122 0.94214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.81 71.99 0.71 -1.79 16 2 C -0.11 -1.70 5.64 30.60 0.17 -1.52 16 3 C 0.08 1.46 2.37 30.62 0.07 1.53 16 4 H 0.06 1.08 6.71 -2.39 -0.02 1.06 16 5 C -0.14 -2.17 4.92 30.68 0.15 -2.02 16 6 C -0.07 -1.31 2.34 -10.68 -0.02 -1.34 16 7 H 0.08 1.65 7.97 -2.38 -0.02 1.63 16 8 C -0.14 -2.85 4.61 29.85 0.14 -2.71 16 9 C 0.51 14.00 6.95 87.66 0.61 14.60 16 10 O -0.56 -18.06 10.21 -3.01 -0.03 -18.09 16 11 N -0.71 -20.20 4.10 -422.79 -1.73 -21.93 16 12 C 0.19 5.92 0.66 3.64 0.00 5.92 16 13 C -0.15 -4.08 8.40 71.98 0.60 -3.47 16 14 C -0.13 -4.71 4.67 30.68 0.14 -4.57 16 15 C 0.16 6.68 6.26 86.36 0.54 7.22 16 16 N -0.61 -29.83 2.99 -699.19 -2.09 -31.93 16 17 C -0.27 -14.58 9.58 84.03 0.81 -13.77 16 18 H 0.06 3.18 7.89 -2.91 -0.02 3.16 16 19 C -0.04 -2.36 4.91 84.86 0.42 -1.94 16 20 N -0.93 -52.98 11.19 21.65 0.24 -52.74 16 21 Si 0.96 44.48 29.59 68.60 2.03 46.51 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 23 H -0.29 -13.60 7.11 99.48 0.71 -12.90 16 24 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 25 C 0.18 8.03 5.04 86.34 0.43 8.46 16 26 C -0.13 -4.54 4.95 30.66 0.15 -4.39 16 27 C -0.15 -3.55 5.40 30.68 0.17 -3.39 16 28 C 0.06 1.50 6.57 72.01 0.47 1.97 16 29 O -0.39 -9.51 9.94 -148.98 -1.48 -11.00 16 30 H 0.04 0.89 7.82 -2.39 -0.02 0.87 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.87 16 33 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 34 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 36 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 37 H 0.12 1.77 8.14 -2.39 -0.02 1.75 16 38 H 0.09 1.94 5.03 -2.38 -0.01 1.93 16 39 H 0.40 10.82 7.27 -92.71 -0.67 10.15 16 40 H 0.06 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.06 1.91 6.17 -2.39 -0.01 1.89 16 43 H 0.07 2.68 6.20 -2.39 -0.01 2.66 16 44 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 45 H 0.04 1.67 7.93 -2.39 -0.02 1.65 16 46 H 0.01 0.38 7.74 -2.39 -0.02 0.36 16 47 H 0.25 13.87 8.31 -92.71 -0.77 13.10 16 48 H 0.05 2.84 6.03 -2.39 -0.01 2.83 16 49 H 0.01 0.40 6.94 -2.38 -0.02 0.38 16 50 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 51 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 52 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 53 H 0.07 2.10 5.92 -2.39 -0.01 2.09 16 54 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 55 H 0.04 1.05 6.50 -2.39 -0.02 1.04 16 Total: -1.00 -63.64 400.81 2.68 -60.96 By element: Atomic # 1 Polarization: 29.22 SS G_CDS: 0.19 Total: 29.40 kcal Atomic # 6 Polarization: -6.75 SS G_CDS: 5.56 Total: -1.19 kcal Atomic # 7 Polarization: -103.01 SS G_CDS: -3.58 Total: -106.60 kcal Atomic # 8 Polarization: -27.57 SS G_CDS: -1.51 Total: -29.08 kcal Atomic # 14 Polarization: 44.48 SS G_CDS: 2.03 Total: 46.51 kcal Total: -63.64 2.68 -60.96 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754630969.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.483 kcal (2) G-P(sol) polarization free energy of solvation -63.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds