Wall clock time and date at job start Tue Mar 31 2020 23:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.47186 * 2 1 4 4 H 1.08994 * 109.46723 * 55.14771 * 3 2 1 5 5 O 1.42898 * 109.46845 * 295.14748 * 3 2 1 6 6 C 1.42898 * 113.99908 * 154.70521 * 5 3 2 7 7 C 1.54261 * 110.03357 * 272.60354 * 6 5 3 8 8 C 1.54966 * 104.15798 * 217.13585 * 7 6 5 9 9 C 1.54887 * 102.77911 * 37.88626 * 8 7 6 10 10 C 1.53869 * 110.03422 * 155.38036 * 6 5 3 11 11 C 1.50699 * 109.46866 * 175.14858 * 3 2 1 12 12 O 1.21283 * 120.00007 * 114.92296 * 11 3 2 13 13 N 1.34772 * 119.99952 * 294.92455 * 11 3 2 14 14 C 1.47485 * 127.03502 * 355.84233 * 13 11 3 15 15 C 1.54005 * 107.24713 * 154.61734 * 14 13 11 16 16 C 1.54611 * 105.04631 * 1.21300 * 15 14 13 17 17 C 1.52999 * 110.73799 * 263.51179 * 16 15 14 18 18 C 1.53000 * 110.74254 * 140.18509 * 16 15 14 19 19 N 1.46498 * 109.46849 * 61.45526 * 18 16 15 20 20 C 1.36940 * 119.99878 * 180.02562 * 19 18 16 21 21 H 1.08007 * 119.99742 * 359.97438 * 20 19 18 22 22 C 1.38812 * 120.00118 * 179.97438 * 20 19 18 23 23 N 1.31618 * 120.00055 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99947 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.46966 * 0.02562 * 24 22 20 26 26 H 1.48506 * 109.46928 * 119.99730 * 24 22 20 27 27 H 1.48497 * 109.47297 * 239.99681 * 24 22 20 28 28 C 1.48393 * 127.17297 * 175.64296 * 13 11 3 29 29 H 1.09001 * 109.47153 * 65.00596 * 1 2 3 30 30 H 1.08998 * 109.47389 * 185.01171 * 1 2 3 31 31 H 1.08999 * 109.46855 * 305.00802 * 1 2 3 32 32 H 1.08999 * 109.46775 * 239.99847 * 2 1 3 33 33 H 1.08996 * 109.46875 * 120.00170 * 2 1 3 34 34 H 1.09002 * 110.01273 * 33.98943 * 6 5 3 35 35 H 1.09004 * 110.48668 * 335.77902 * 7 6 5 36 36 H 1.09000 * 110.49175 * 98.42509 * 7 6 5 37 37 H 1.09000 * 110.72156 * 279.56806 * 8 7 6 38 38 H 1.09000 * 110.92097 * 156.29435 * 8 7 6 39 39 H 1.08999 * 110.48661 * 203.40679 * 9 8 7 40 40 H 1.08997 * 110.48773 * 80.75999 * 9 8 7 41 41 H 1.08998 * 110.03771 * 238.56898 * 10 6 5 42 42 H 1.09007 * 110.03286 * 359.95654 * 10 6 5 43 43 H 1.08994 * 109.91599 * 35.16234 * 14 13 11 44 44 H 1.09004 * 109.91533 * 274.07487 * 14 13 11 45 45 H 1.09007 * 110.32405 * 120.10169 * 15 14 13 46 46 H 1.09001 * 110.32679 * 242.21240 * 15 14 13 47 47 H 1.09004 * 109.47269 * 58.53977 * 17 16 15 48 48 H 1.08999 * 109.47286 * 178.54468 * 17 16 15 49 49 H 1.08997 * 109.47194 * 298.54764 * 17 16 15 50 50 H 1.08998 * 109.46884 * 181.44898 * 18 16 15 51 51 H 1.08997 * 109.47411 * 301.45264 * 18 16 15 52 52 H 0.96995 * 120.00424 * 359.97438 * 19 18 16 53 53 H 0.96995 * 120.00246 * 180.02562 * 23 22 20 54 54 H 1.09001 * 110.51754 * 100.78950 * 28 13 11 55 55 H 1.09005 * 110.82933 * 337.82251 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 1 1.6075 1.9808 0.8433 5 8 1.6590 2.0824 -1.2196 6 6 1.5566 3.5044 -1.1225 7 6 0.1416 3.9015 -0.6535 8 6 -0.1721 5.1945 -1.4479 9 6 0.4565 4.9062 -2.8338 10 6 1.7571 4.1432 -2.5079 11 6 3.5422 1.4442 0.1202 12 8 4.2232 1.8604 -0.7931 13 7 4.1290 0.9831 1.2424 14 6 3.4565 0.5241 2.4722 15 6 4.4095 -0.4621 3.1729 16 6 5.6703 -0.5056 2.2791 17 6 5.6164 -1.6997 1.3240 18 6 6.9388 -0.5500 3.1333 19 7 6.9333 -1.7641 3.9530 20 6 7.9749 -2.0203 4.8043 21 1 8.8008 -1.3274 4.8709 22 6 7.9694 -3.1705 5.5814 23 7 6.9628 -4.0146 5.5005 24 14 9.3907 -3.5203 6.7420 25 1 10.3884 -2.4245 6.6471 26 1 8.8826 -3.6072 8.1347 27 1 10.0306 -4.8069 6.3674 28 6 5.5830 0.8281 1.4954 29 1 -0.3633 0.4342 -0.9314 30 1 -0.3634 -1.0237 0.0898 31 1 -0.3633 0.5896 0.8417 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 2.3019 3.8853 -0.4243 35 1 -0.5758 3.1188 -0.9003 36 1 0.1367 4.1006 0.4182 37 1 0.3014 6.0583 -0.9812 38 1 -1.2479 5.3461 -1.5356 39 1 0.6808 5.8383 -3.3524 40 1 -0.2097 4.2858 -3.4332 41 1 2.5991 4.8348 -2.4820 42 1 1.9333 3.3685 -3.2543 43 1 2.5228 0.0219 2.2194 44 1 3.2559 1.3738 3.1249 45 1 4.6639 -0.0998 4.1690 46 1 3.9532 -1.4501 3.2351 47 1 4.7223 -1.6294 0.7045 48 1 6.5010 -1.6958 0.6872 49 1 5.5874 -2.6246 1.9000 50 1 7.8142 -0.5541 2.4838 51 1 6.9714 0.3258 3.7813 52 1 6.1914 -2.3862 3.8935 53 1 6.9588 -4.8181 6.0438 54 1 5.9557 1.6548 2.1002 55 1 6.1344 0.7601 0.5576 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754708286.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:30 Heat of formation + Delta-G solvation = -102.556724 kcal Electronic energy + Delta-G solvation = -31012.400245 eV Core-core repulsion = 27048.135366 eV Total energy + Delta-G solvation = -3964.264879 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.62636 -40.16377 -38.95597 -37.10985 -36.51228 -34.69781 -33.86929 -32.03484 -30.64133 -29.66437 -29.25191 -28.42559 -27.65502 -26.52796 -24.46069 -24.07626 -22.76481 -21.70854 -21.33571 -20.53877 -20.04303 -19.18599 -18.44796 -17.91556 -17.06169 -16.84893 -16.67528 -16.48848 -15.80804 -15.62202 -15.48210 -15.18137 -15.05439 -14.90025 -14.75860 -14.30572 -14.26873 -14.14934 -13.80762 -13.46856 -13.45146 -13.21484 -13.02519 -12.93485 -12.86571 -12.79795 -12.73805 -12.54506 -12.10513 -12.07007 -12.03308 -12.02202 -11.86921 -11.84470 -11.66588 -11.55744 -11.51714 -11.49325 -11.34310 -11.26216 -10.92741 -10.27065 -9.73788 -8.95306 -7.92847 -5.19907 1.45944 1.48567 1.49413 1.58816 1.80297 2.57386 2.61971 3.28102 3.41282 3.57858 3.60373 3.62767 3.67478 3.84988 3.86696 3.92625 3.99589 4.13426 4.23988 4.27641 4.31718 4.35423 4.39234 4.48824 4.51322 4.56097 4.60640 4.66183 4.71841 4.74576 4.78576 4.80594 4.91518 4.92021 4.98454 5.02751 5.02910 5.03214 5.08215 5.14135 5.15427 5.19407 5.22164 5.26935 5.30439 5.35910 5.42400 5.44381 5.46249 5.53027 6.13991 6.29943 6.49605 7.05017 7.37599 8.12901 8.38170 9.30578 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.027076 B = 0.002159 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1033.861283 B =12964.109394 C =13340.713976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.119 4.119 3 C 0.087 3.913 4 H 0.107 0.893 5 O -0.362 6.362 6 C 0.079 3.921 7 C -0.143 4.143 8 C -0.120 4.120 9 C -0.119 4.119 10 C -0.123 4.123 11 C 0.501 3.499 12 O -0.577 6.577 13 N -0.612 5.612 14 C 0.096 3.904 15 C -0.115 4.115 16 C -0.071 4.071 17 C -0.120 4.120 18 C 0.168 3.832 19 N -0.736 5.736 20 C -0.241 4.241 21 H 0.073 0.927 22 C -0.073 4.073 23 N -0.966 5.966 24 Si 0.969 3.031 25 H -0.269 1.269 26 H -0.293 1.293 27 H -0.296 1.296 28 C 0.120 3.880 29 H 0.055 0.945 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.059 0.941 33 H 0.097 0.903 34 H 0.047 0.953 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.072 0.928 38 H 0.084 0.916 39 H 0.077 0.923 40 H 0.069 0.931 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.102 0.898 44 H 0.090 0.910 45 H 0.075 0.925 46 H 0.076 0.924 47 H 0.058 0.942 48 H 0.045 0.955 49 H 0.048 0.952 50 H 0.014 0.986 51 H 0.027 0.973 52 H 0.378 0.622 53 H 0.250 0.750 54 H 0.082 0.918 55 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.404 16.714 -11.947 28.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.157 4.157 3 C 0.025 3.975 4 H 0.125 0.875 5 O -0.280 6.280 6 C 0.022 3.978 7 C -0.181 4.181 8 C -0.157 4.157 9 C -0.156 4.156 10 C -0.160 4.160 11 C 0.291 3.709 12 O -0.456 6.456 13 N -0.347 5.347 14 C -0.026 4.026 15 C -0.153 4.153 16 C -0.072 4.072 17 C -0.177 4.177 18 C 0.041 3.959 19 N -0.379 5.379 20 C -0.373 4.373 21 H 0.090 0.910 22 C -0.265 4.265 23 N -0.617 5.617 24 Si 0.798 3.202 25 H -0.193 1.193 26 H -0.220 1.220 27 H -0.224 1.224 28 C -0.003 4.003 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.078 0.922 33 H 0.115 0.885 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.095 0.905 37 H 0.090 0.910 38 H 0.102 0.898 39 H 0.096 0.904 40 H 0.088 0.912 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.120 0.880 44 H 0.108 0.892 45 H 0.094 0.906 46 H 0.095 0.905 47 H 0.077 0.923 48 H 0.064 0.936 49 H 0.067 0.933 50 H 0.032 0.968 51 H 0.045 0.955 52 H 0.211 0.789 53 H 0.059 0.941 54 H 0.100 0.900 55 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -18.984 16.946 -12.636 28.412 hybrid contribution 1.326 -0.735 0.821 1.724 sum -17.658 16.211 -11.815 26.724 Atomic orbital electron populations 1.21679 0.92574 1.02869 1.02703 1.21732 0.98746 0.91605 1.03589 1.22145 0.87900 0.97529 0.89877 0.87542 1.88040 1.87556 1.20133 1.32248 1.22975 0.96940 0.80055 0.97862 1.22937 0.95655 0.98898 1.00627 1.22454 1.01609 0.96804 0.94861 1.22340 0.95367 1.00103 0.97834 1.22171 0.99130 0.99060 0.95676 1.21771 0.92352 0.76617 0.80183 1.90682 1.66517 1.48506 1.39882 1.48953 1.07959 1.63039 1.14728 1.22526 0.96879 0.98419 0.84753 1.22469 0.94119 1.00076 0.98668 1.21662 0.95566 0.94722 0.95256 1.21587 1.01003 0.97013 0.98117 1.20687 0.94398 0.89177 0.91629 1.42452 1.24139 1.23670 1.47649 1.19628 0.99379 1.03757 1.14491 0.90952 1.25468 1.00666 0.97710 1.02694 1.69794 1.33149 1.13599 1.45117 0.85140 0.79154 0.77407 0.78452 1.19347 1.22000 1.22358 1.22429 0.81855 0.96482 0.99532 0.92562 0.91274 0.91130 0.92187 0.88518 0.93476 0.90113 0.90453 0.90967 0.89785 0.90427 0.91185 0.91517 0.92050 0.87992 0.89202 0.90615 0.90534 0.92316 0.93607 0.93300 0.96787 0.95466 0.78860 0.94063 0.90022 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.75 71.98 0.70 -1.11 16 2 C -0.12 -2.06 5.44 30.60 0.17 -1.89 16 3 C 0.09 1.77 1.78 29.85 0.05 1.82 16 4 H 0.11 1.62 7.81 -2.39 -0.02 1.60 16 5 O -0.36 -8.45 8.75 -129.99 -1.14 -9.59 16 6 C 0.08 1.56 3.05 31.31 0.10 1.65 16 7 C -0.14 -1.91 6.43 31.69 0.20 -1.71 16 8 C -0.12 -1.32 6.91 31.91 0.22 -1.10 16 9 C -0.12 -1.57 6.83 31.67 0.22 -1.35 16 10 C -0.12 -2.34 6.61 31.32 0.21 -2.13 16 11 C 0.50 13.75 6.99 87.66 0.61 14.36 16 12 O -0.58 -20.96 16.68 15.95 0.27 -20.69 16 13 N -0.61 -15.10 3.22 -808.68 -2.61 -17.71 16 14 C 0.10 1.84 6.58 86.53 0.57 2.41 16 15 C -0.12 -3.00 5.51 31.48 0.17 -2.83 16 16 C -0.07 -2.14 0.64 -50.97 -0.03 -2.18 16 17 C -0.12 -3.81 8.31 71.98 0.60 -3.21 16 18 C 0.17 6.43 5.09 86.38 0.44 6.87 16 19 N -0.74 -35.57 5.16 -343.45 -1.77 -37.34 16 20 C -0.24 -13.10 9.99 84.03 0.84 -12.26 16 21 H 0.07 3.83 7.83 -2.91 -0.02 3.81 16 22 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 23 N -0.97 -57.45 13.06 21.65 0.28 -57.17 16 24 Si 0.97 45.56 29.55 68.60 2.03 47.58 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 26 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 27 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 28 C 0.12 3.34 5.97 86.68 0.52 3.86 16 29 H 0.06 0.81 7.95 -2.39 -0.02 0.79 16 30 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.10 1.48 5.18 -2.39 -0.01 1.47 16 34 H 0.05 1.03 7.74 -2.39 -0.02 1.01 16 35 H 0.08 1.07 8.08 -2.38 -0.02 1.05 16 36 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 38 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 40 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 42 H 0.06 1.37 7.96 -2.38 -0.02 1.35 16 43 H 0.10 1.50 4.99 -2.39 -0.01 1.49 16 44 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 45 H 0.08 2.15 7.85 -2.38 -0.02 2.13 16 46 H 0.08 2.06 7.87 -2.39 -0.02 2.04 16 47 H 0.06 1.68 8.09 -2.38 -0.02 1.66 16 48 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.05 1.75 7.13 -2.39 -0.02 1.74 16 50 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 51 H 0.03 1.03 8.12 -2.39 -0.02 1.01 16 52 H 0.38 19.17 6.39 -92.71 -0.59 18.58 16 53 H 0.25 14.47 8.31 -92.71 -0.77 13.70 16 54 H 0.08 2.13 8.04 -2.39 -0.02 2.12 16 55 H 0.07 2.10 7.82 -2.38 -0.02 2.08 16 Total: -1.00 -69.36 424.00 3.36 -65.99 By element: Atomic # 1 Polarization: 31.09 SS G_CDS: 0.25 Total: 31.34 kcal Atomic # 6 Polarization: -8.47 SS G_CDS: 6.05 Total: -2.42 kcal Atomic # 7 Polarization: -108.12 SS G_CDS: -4.09 Total: -112.22 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.87 Total: -30.28 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.58 kcal Total: -69.36 3.36 -65.99 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754708286.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.564 kcal (2) G-P(sol) polarization free energy of solvation -69.355 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds