Wall clock time and date at job start Tue Mar 31 2020 23:57:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.47281 * 2 1 4 4 H 1.09000 * 109.47093 * 304.56203 * 3 2 1 5 5 O 1.42909 * 109.46699 * 64.55555 * 3 2 1 6 6 C 1.42894 * 113.99744 * 210.18942 * 5 3 2 7 7 C 1.54893 * 110.48855 * 89.04845 * 6 5 3 8 8 C 1.55240 * 102.58886 * 156.67393 * 7 6 5 9 9 C 1.54263 * 104.23001 * 322.08770 * 8 7 6 10 10 C 1.53871 * 106.60337 * 23.60698 * 9 8 7 11 11 C 1.50699 * 109.47311 * 184.55286 * 3 2 1 12 12 O 1.21279 * 120.00275 * 249.35974 * 11 3 2 13 13 N 1.34777 * 119.99747 * 69.35977 * 11 3 2 14 14 C 1.48119 * 127.03501 * 4.73608 * 13 11 3 15 15 C 1.54594 * 103.42329 * 219.28607 * 14 13 11 16 16 C 1.54618 * 102.90824 * 322.86393 * 15 14 13 17 17 C 1.53001 * 110.32924 * 262.80555 * 16 15 14 18 18 C 1.53007 * 110.32622 * 140.59293 * 16 15 14 19 19 N 1.46500 * 109.46784 * 64.37891 * 18 16 15 20 20 C 1.36947 * 119.99640 * 180.02562 * 19 18 16 21 21 H 1.07995 * 120.00020 * 359.97438 * 20 19 18 22 22 C 1.38815 * 119.99554 * 180.02562 * 20 19 18 23 23 N 1.31615 * 120.00010 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 119.99464 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47475 * 89.99786 * 24 22 20 26 26 H 1.48498 * 109.46814 * 210.00014 * 24 22 20 27 27 H 1.48507 * 109.47207 * 329.99557 * 24 22 20 28 28 C 1.47480 * 127.03344 * 185.04386 * 13 11 3 29 29 H 1.09000 * 109.46864 * 184.14193 * 1 2 3 30 30 H 1.09005 * 109.47143 * 304.13529 * 1 2 3 31 31 H 1.09001 * 109.47272 * 64.13240 * 1 2 3 32 32 H 1.09000 * 109.47414 * 240.00354 * 2 1 3 33 33 H 1.09000 * 109.47725 * 120.00372 * 2 1 3 34 34 H 1.09002 * 110.43680 * 326.51061 * 6 5 3 35 35 H 1.08997 * 110.75265 * 275.06879 * 7 6 5 36 36 H 1.09003 * 110.75418 * 38.43924 * 7 6 5 37 37 H 1.09000 * 110.46786 * 203.39476 * 8 7 6 38 38 H 1.09004 * 110.57886 * 80.83329 * 8 7 6 39 39 H 1.09003 * 110.03263 * 264.32188 * 9 8 7 40 40 H 1.09004 * 110.03222 * 142.89697 * 9 8 7 41 41 H 1.08992 * 110.03794 * 240.71379 * 10 9 8 42 42 H 1.09007 * 110.07053 * 119.30524 * 10 9 8 43 43 H 1.09006 * 110.65644 * 337.76885 * 14 13 11 44 44 H 1.09001 * 110.66529 * 100.88074 * 14 13 11 45 45 H 1.09005 * 110.83294 * 204.44734 * 15 14 13 46 46 H 1.08991 * 110.73122 * 81.23956 * 15 14 13 47 47 H 1.08997 * 109.46951 * 175.62169 * 17 16 15 48 48 H 1.09000 * 109.47304 * 295.62758 * 17 16 15 49 49 H 1.09001 * 109.46879 * 55.62372 * 17 16 15 50 50 H 1.08996 * 109.47120 * 184.38275 * 18 16 15 51 51 H 1.09003 * 109.46677 * 304.38211 * 18 16 15 52 52 H 0.97000 * 120.00296 * 359.97438 * 19 18 16 53 53 H 0.97005 * 119.99802 * 180.02562 * 23 22 20 54 54 H 1.09001 * 109.91769 * 273.88253 * 28 13 11 55 55 H 1.09001 * 109.91476 * 34.97267 * 28 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6115 1.9795 -0.8463 5 8 1.6530 2.0846 1.2167 6 6 1.4437 3.4924 1.0899 7 6 -0.0255 3.7891 0.6991 8 6 -0.2191 5.2478 1.1936 9 6 0.5667 5.3061 2.5198 10 6 1.6238 4.1900 2.4539 11 6 3.5428 1.4441 -0.1128 12 8 4.2214 1.7888 0.8314 13 7 4.1326 1.0623 -1.2630 14 6 3.4614 0.7079 -2.5349 15 6 4.2882 -0.4903 -3.0552 16 6 5.7332 -0.1123 -2.6555 17 6 6.4625 0.5259 -3.8395 18 6 6.4904 -1.3491 -2.1676 19 7 6.6273 -2.3042 -3.2700 20 6 7.2742 -3.4943 -3.0685 21 1 7.6838 -3.7285 -2.0970 22 6 7.4044 -4.3991 -4.1132 23 7 6.9057 -4.1133 -5.2972 24 14 8.2874 -6.0221 -3.8384 25 1 7.3095 -7.0496 -3.3992 26 1 8.9279 -6.4577 -5.1054 27 1 9.3271 -5.8490 -2.7922 28 6 5.5780 0.9061 -1.5108 29 1 -0.3633 -1.0250 0.0742 30 1 -0.3634 0.5767 0.8506 31 1 -0.3634 0.4484 -0.9247 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5139 0.8899 34 1 2.1270 3.9139 0.3526 35 1 -0.1587 3.7236 -0.3807 36 1 -0.7066 3.1125 1.2153 37 1 -1.2753 5.4547 1.3665 38 1 0.1942 5.9544 0.4738 39 1 -0.1059 5.1342 3.3602 40 1 1.0535 6.2760 2.6231 41 1 1.4644 3.4764 3.2622 42 1 2.6241 4.6175 2.5255 43 1 2.4279 0.4118 -2.3548 44 1 3.5073 1.5389 -3.2387 45 1 4.1986 -0.5822 -4.1377 46 1 3.9808 -1.4135 -2.5642 47 1 7.4511 0.8570 -3.5215 48 1 6.5646 -0.2060 -4.6407 49 1 5.8912 1.3815 -4.1996 50 1 7.4795 -1.0547 -1.8170 51 1 5.9387 -1.8140 -1.3505 52 1 6.2592 -2.0940 -4.1425 53 1 6.9964 -4.7458 -6.0271 54 1 6.0100 1.8629 -1.8039 55 1 6.0709 0.5362 -0.6117 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754708292.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:57:34 Heat of formation + Delta-G solvation = -105.164844 kcal Electronic energy + Delta-G solvation = -31002.837228 eV Core-core repulsion = 27038.459253 eV Total energy + Delta-G solvation = -3964.377975 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.61099 -40.16421 -39.00320 -37.15610 -36.52637 -34.71430 -33.92268 -32.11820 -30.58481 -29.64705 -29.30217 -28.34512 -27.62986 -26.48488 -24.57148 -23.98777 -22.84225 -21.77242 -21.23309 -20.52613 -20.08171 -19.18266 -18.50778 -17.90120 -17.24869 -16.85396 -16.59507 -16.37511 -15.87311 -15.63587 -15.56119 -15.16139 -15.09412 -14.93735 -14.70616 -14.33811 -14.16547 -14.08079 -13.70305 -13.46087 -13.38251 -13.19956 -13.06261 -12.96936 -12.93470 -12.86732 -12.73003 -12.58281 -12.16950 -12.14088 -12.10570 -12.05826 -11.96592 -11.85064 -11.63400 -11.53212 -11.47341 -11.40298 -11.35600 -11.24411 -10.94213 -10.27480 -9.77857 -8.98371 -7.95318 -5.22532 1.44756 1.47127 1.47601 1.56160 1.80092 2.55284 2.60476 3.28893 3.37942 3.58190 3.62713 3.64733 3.68856 3.78593 3.85857 3.89827 3.99304 4.20371 4.20996 4.26124 4.31543 4.35958 4.40401 4.48633 4.52303 4.56093 4.58642 4.64954 4.67745 4.75954 4.77203 4.82701 4.89476 4.91025 4.93502 5.00707 5.05682 5.07805 5.08650 5.11938 5.18812 5.20231 5.23656 5.25254 5.26989 5.38840 5.42758 5.45767 5.49139 5.52313 6.13407 6.27656 6.48208 7.04991 7.35415 8.09332 8.37145 9.27617 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.022135 B = 0.002267 C = 0.002213 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.650494 B =12349.495430 C =12650.234726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C 0.090 3.910 4 H 0.112 0.888 5 O -0.363 6.363 6 C 0.075 3.925 7 C -0.140 4.140 8 C -0.120 4.120 9 C -0.119 4.119 10 C -0.123 4.123 11 C 0.499 3.501 12 O -0.578 6.578 13 N -0.615 5.615 14 C 0.099 3.901 15 C -0.117 4.117 16 C -0.070 4.070 17 C -0.125 4.125 18 C 0.167 3.833 19 N -0.733 5.733 20 C -0.247 4.247 21 H 0.066 0.934 22 C -0.068 4.068 23 N -0.963 5.963 24 Si 0.968 3.032 25 H -0.287 1.287 26 H -0.293 1.293 27 H -0.275 1.275 28 C 0.121 3.879 29 H 0.065 0.935 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.063 0.937 42 H 0.056 0.944 43 H 0.106 0.894 44 H 0.103 0.897 45 H 0.091 0.909 46 H 0.058 0.942 47 H 0.052 0.948 48 H 0.048 0.952 49 H 0.080 0.920 50 H 0.012 0.988 51 H 0.006 0.994 52 H 0.381 0.619 53 H 0.252 0.748 54 H 0.081 0.919 55 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.744 19.976 7.772 28.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.156 4.156 3 C 0.028 3.972 4 H 0.130 0.870 5 O -0.281 6.281 6 C 0.018 3.982 7 C -0.178 4.178 8 C -0.158 4.158 9 C -0.157 4.157 10 C -0.161 4.161 11 C 0.289 3.711 12 O -0.458 6.458 13 N -0.350 5.350 14 C -0.022 4.022 15 C -0.155 4.155 16 C -0.071 4.071 17 C -0.183 4.183 18 C 0.040 3.960 19 N -0.377 5.377 20 C -0.379 4.379 21 H 0.084 0.916 22 C -0.261 4.261 23 N -0.613 5.613 24 Si 0.798 3.202 25 H -0.214 1.214 26 H -0.219 1.219 27 H -0.201 1.201 28 C -0.002 4.002 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.101 0.899 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.124 0.876 44 H 0.121 0.879 45 H 0.110 0.890 46 H 0.077 0.923 47 H 0.071 0.929 48 H 0.067 0.933 49 H 0.099 0.901 50 H 0.030 0.970 51 H 0.024 0.976 52 H 0.215 0.785 53 H 0.061 0.939 54 H 0.099 0.901 55 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -18.368 19.995 8.666 28.500 hybrid contribution 1.264 -1.183 -0.198 1.743 sum -17.104 18.812 8.468 26.798 Atomic orbital electron populations 1.21685 0.92342 1.02770 1.03033 1.21666 0.98897 0.91795 1.03241 1.22106 0.87768 0.97352 0.89960 0.87017 1.88022 1.87136 1.21419 1.31483 1.23251 0.96786 0.80220 0.97968 1.23062 0.95113 0.97749 1.01886 1.22345 1.01156 0.95696 0.96572 1.22089 0.96957 0.97805 0.98810 1.22145 0.99689 0.97744 0.96491 1.21808 0.92419 0.76326 0.80562 1.90677 1.66767 1.49397 1.38941 1.48971 1.08039 1.66217 1.11755 1.22876 0.97808 0.97635 0.83902 1.22650 0.92834 0.97726 1.02285 1.21500 0.96492 0.93782 0.95361 1.21739 0.99859 1.00353 0.96313 1.20766 0.96006 0.89017 0.90167 1.42441 1.67952 1.17161 1.10141 1.19549 1.27580 0.94878 0.95874 0.91574 1.25444 1.02972 1.02024 0.95676 1.69777 1.52262 1.37446 1.01815 0.85221 0.78226 0.80203 0.76579 1.21440 1.21903 1.20053 1.21997 0.81950 0.98838 0.97436 0.91636 0.92258 0.90707 0.89063 0.92695 0.92615 0.90061 0.90359 0.89862 0.90895 0.90847 0.90879 0.91784 0.92480 0.87564 0.87943 0.89049 0.92290 0.92910 0.93339 0.90075 0.97043 0.97583 0.78537 0.93900 0.90079 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.85 71.98 0.71 -1.26 16 2 C -0.12 -2.27 5.38 30.59 0.16 -2.10 16 3 C 0.09 1.89 1.61 29.85 0.05 1.94 16 4 H 0.11 1.66 7.63 -2.39 -0.02 1.65 16 5 O -0.36 -8.75 8.70 -130.11 -1.13 -9.88 16 6 C 0.08 1.45 3.07 31.67 0.10 1.55 16 7 C -0.14 -1.80 6.62 32.01 0.21 -1.59 16 8 C -0.12 -1.26 6.84 31.79 0.22 -1.05 16 9 C -0.12 -1.52 6.80 31.32 0.21 -1.31 16 10 C -0.12 -2.34 6.56 31.32 0.21 -2.14 16 11 C 0.50 14.39 7.16 87.66 0.63 15.01 16 12 O -0.58 -22.13 16.90 15.84 0.27 -21.86 16 13 N -0.62 -15.73 3.29 -810.08 -2.67 -18.40 16 14 C 0.10 1.85 6.51 86.61 0.56 2.41 16 15 C -0.12 -3.05 5.72 31.69 0.18 -2.87 16 16 C -0.07 -2.12 0.67 -51.29 -0.03 -2.16 16 17 C -0.13 -3.52 8.05 71.98 0.58 -2.94 16 18 C 0.17 6.82 4.85 86.38 0.42 7.24 16 19 N -0.73 -36.36 5.12 -343.43 -1.76 -38.12 16 20 C -0.25 -13.83 9.99 84.03 0.84 -12.99 16 21 H 0.07 3.66 7.83 -2.91 -0.02 3.64 16 22 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 23 N -0.96 -57.30 13.06 21.65 0.28 -57.01 16 24 Si 0.97 46.15 29.55 68.60 2.03 48.18 16 25 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 26 H -0.29 -13.90 7.11 99.48 0.71 -13.20 16 27 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 28 C 0.12 3.47 6.27 86.53 0.54 4.01 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.90 7.70 -2.38 -0.02 0.88 16 31 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.09 1.63 6.01 -2.39 -0.01 1.61 16 33 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.06 1.14 7.91 -2.39 -0.02 1.12 16 35 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 40 H 0.07 0.82 8.14 -2.38 -0.02 0.81 16 41 H 0.06 1.36 8.07 -2.39 -0.02 1.34 16 42 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 43 H 0.11 1.47 5.50 -2.38 -0.01 1.46 16 44 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.09 2.32 7.85 -2.38 -0.02 2.30 16 46 H 0.06 1.81 7.84 -2.39 -0.02 1.80 16 47 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.05 1.63 6.75 -2.39 -0.02 1.61 16 49 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 50 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 51 H 0.01 0.27 8.11 -2.39 -0.02 0.25 16 52 H 0.38 19.36 6.18 -92.71 -0.57 18.79 16 53 H 0.25 14.55 8.31 -92.70 -0.77 13.78 16 54 H 0.08 2.09 7.68 -2.39 -0.02 2.07 16 55 H 0.05 1.75 7.65 -2.39 -0.02 1.73 16 Total: -1.00 -72.12 424.43 3.34 -68.78 By element: Atomic # 1 Polarization: 29.70 SS G_CDS: 0.27 Total: 29.97 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 6.05 Total: -1.65 kcal Atomic # 7 Polarization: -109.38 SS G_CDS: -4.14 Total: -113.53 kcal Atomic # 8 Polarization: -30.88 SS G_CDS: -0.86 Total: -31.74 kcal Atomic # 14 Polarization: 46.15 SS G_CDS: 2.03 Total: 48.18 kcal Total: -72.12 3.34 -68.78 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754708292.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.384 kcal (2) G-P(sol) polarization free energy of solvation -72.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds