Wall clock time and date at job start Tue Mar 31 2020 22:44:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47718 * 2 1 4 4 H 1.09000 * 109.46687 * 55.00194 * 3 2 1 5 5 C 1.52998 * 109.47059 * 295.00143 * 3 2 1 6 6 C 1.52999 * 109.47077 * 174.99810 * 3 2 1 7 7 C 1.53003 * 109.46904 * 185.00061 * 6 3 2 8 8 C 1.53001 * 109.47120 * 180.02562 * 7 6 3 9 9 C 1.53003 * 109.47120 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.46727 * 180.02562 * 9 8 7 11 11 O 1.21283 * 120.00216 * 359.97438 * 10 9 8 12 12 N 1.34783 * 119.99663 * 180.02562 * 10 9 8 13 13 C 1.46497 * 119.99974 * 179.97438 * 12 10 9 14 14 H 1.09007 * 110.77177 * 328.53359 * 13 12 10 15 15 C 1.55063 * 111.04728 * 92.18716 * 13 12 10 16 16 O 1.44599 * 103.66842 * 81.72173 * 15 13 12 17 17 C 1.42846 * 106.73521 * 39.08822 * 16 15 13 18 18 C 1.52653 * 115.96585 * 202.47029 * 17 16 15 19 19 N 1.47224 * 87.78043 * 218.41234 * 18 17 16 20 20 C 1.36931 * 135.96376 * 206.38030 * 19 18 17 21 21 H 1.08002 * 120.00438 * 0.02562 * 20 19 18 22 22 C 1.38817 * 119.99680 * 179.72312 * 20 19 18 23 23 N 1.31614 * 119.99888 * 0.27479 * 22 20 19 24 24 Si 1.86803 * 119.99862 * 180.27671 * 22 20 19 25 25 H 1.48496 * 109.47141 * 59.99751 * 24 22 20 26 26 H 1.48490 * 109.47071 * 180.02562 * 24 22 20 27 27 H 1.48501 * 109.46993 * 300.00028 * 24 22 20 28 28 C 1.47220 * 88.06760 * 26.63433 * 19 18 17 29 29 C 1.53317 * 108.32613 * 334.30564 * 17 16 15 30 30 H 1.08988 * 109.47583 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46911 * 300.00179 * 1 2 3 32 32 H 1.08997 * 109.46851 * 59.99429 * 1 2 3 33 33 H 1.09006 * 109.46911 * 239.99820 * 2 1 3 34 34 H 1.08997 * 109.46851 * 120.00571 * 2 1 3 35 35 H 1.08996 * 109.47016 * 299.99911 * 5 3 2 36 36 H 1.09003 * 109.46774 * 59.99864 * 5 3 2 37 37 H 1.08998 * 109.46781 * 179.97438 * 5 3 2 38 38 H 1.09006 * 109.46804 * 65.00252 * 6 3 2 39 39 H 1.08996 * 109.47407 * 305.00560 * 6 3 2 40 40 H 1.08994 * 109.46844 * 60.00348 * 7 6 3 41 41 H 1.08998 * 109.46847 * 300.00077 * 7 6 3 42 42 H 1.09006 * 109.46952 * 59.99968 * 8 7 6 43 43 H 1.08996 * 109.47043 * 300.00409 * 8 7 6 44 44 H 1.08994 * 109.46844 * 60.00034 * 9 8 7 45 45 H 1.08998 * 109.46847 * 299.99764 * 9 8 7 46 46 H 0.96994 * 119.99511 * 359.97438 * 12 10 9 47 47 H 1.09000 * 110.58523 * 200.26796 * 15 13 12 48 48 H 1.09004 * 110.58359 * 323.17218 * 15 13 12 49 49 H 1.09002 * 113.49461 * 103.68038 * 18 17 16 50 50 H 1.08998 * 113.55945 * 333.15309 * 18 17 16 51 51 H 0.97005 * 119.99715 * 179.97438 * 23 22 20 52 52 H 1.09001 * 113.49518 * 88.09122 * 28 19 18 53 53 H 1.08998 * 113.50705 * 218.63960 * 28 19 18 54 54 H 1.09002 * 110.56619 * 120.19354 * 29 17 16 55 55 H 1.08999 * 110.56481 * 243.04261 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6056 1.9814 0.8419 5 6 1.6354 2.1265 -1.3073 6 6 3.5650 1.4441 0.1258 7 6 4.0647 2.8848 0.2512 8 6 5.5896 2.8865 0.3763 9 6 6.0894 4.3272 0.5011 10 6 7.5914 4.3289 0.6237 11 8 8.2019 3.2810 0.6129 12 7 8.2562 5.4949 0.7464 13 6 9.7163 5.4966 0.8662 14 1 10.0633 4.5982 1.3768 15 6 10.3889 5.6366 -0.5239 16 8 10.3423 7.0581 -0.7844 17 6 10.6147 7.7127 0.4557 18 6 10.1140 9.1497 0.5770 19 7 11.3551 9.4600 1.3057 20 6 11.7428 10.3806 2.2422 21 1 11.0353 11.1103 2.6075 22 6 13.0436 10.3721 2.7268 23 7 13.9057 9.4826 2.2821 24 14 13.5705 11.6232 4.0101 25 1 12.7334 11.4669 5.2266 26 1 14.9971 11.4038 4.3587 27 1 13.3998 12.9937 3.4646 28 6 11.9984 8.3511 0.5819 29 6 10.2091 6.7721 1.5965 30 1 -0.3634 -1.0275 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 1.8933 -0.5139 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 2.0700 1.5875 -2.1491 36 1 0.5491 2.1253 -1.3968 37 1 1.9985 3.1542 -1.3071 38 1 4.0030 0.9833 -0.7597 39 1 3.8571 0.8797 1.0113 40 1 3.6267 3.3455 1.1365 41 1 3.7725 3.4490 -0.6344 42 1 6.0274 2.4258 -0.5093 43 1 5.8821 2.3220 1.2616 44 1 5.6517 4.7882 1.3865 45 1 5.7969 4.8912 -0.3846 46 1 7.7678 6.3329 0.7555 47 1 11.4208 5.2872 -0.4873 48 1 9.8247 5.0897 -1.2794 49 1 9.2159 9.2469 1.1870 50 1 10.0316 9.6646 -0.3801 51 1 14.8148 9.4769 2.6204 52 1 12.4288 8.6482 -0.3745 53 1 12.6903 7.7746 1.1958 54 1 11.0676 6.5440 2.2283 55 1 9.4042 7.2106 2.1864 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755061168.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:44:27 Heat of formation + Delta-G solvation = -78.435707 kcal Electronic energy + Delta-G solvation = -29169.341926 eV Core-core repulsion = 25206.123013 eV Total energy + Delta-G solvation = -3963.218913 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.71389 -40.44223 -38.46428 -37.96874 -35.54906 -35.28622 -34.16551 -32.25759 -31.30757 -29.95039 -29.05051 -27.48240 -26.65835 -26.46451 -24.31345 -23.93337 -22.52039 -21.72598 -21.30323 -20.63449 -20.43916 -18.77001 -18.07846 -17.75300 -17.06202 -16.90236 -16.60263 -16.20912 -15.98253 -15.90474 -15.64825 -15.50630 -15.17511 -14.85617 -14.46445 -14.31487 -14.16848 -14.02991 -13.79186 -13.38881 -13.12738 -13.04352 -12.92951 -12.82832 -12.73595 -12.58158 -12.54286 -12.47510 -12.45045 -12.33764 -12.17719 -12.01863 -11.92982 -11.92451 -11.49147 -11.45863 -11.35943 -11.22292 -11.11571 -10.88350 -10.76007 -10.51776 -9.94673 -8.98502 -7.92304 -5.27549 1.46922 1.50438 1.56590 1.67172 2.18612 2.43727 2.88166 3.26955 3.39522 3.58040 3.64945 3.69073 3.74650 3.86879 3.99245 3.99823 4.08559 4.18422 4.22673 4.36631 4.46565 4.52622 4.61687 4.66586 4.68357 4.70366 4.73518 4.76311 4.77683 4.80834 4.86735 4.91337 4.93473 4.97086 4.97365 5.01866 5.06983 5.15413 5.15888 5.20533 5.20618 5.27593 5.30637 5.34119 5.40865 5.46204 5.47416 5.53662 5.64049 5.65373 5.85290 6.08051 6.59297 6.86629 7.28508 7.56824 8.55495 9.25092 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.026760 B = 0.001575 C = 0.001549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1046.103277 B =17774.987834 C =18077.105965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.090 4.090 4 H 0.070 0.930 5 C -0.150 4.150 6 C -0.115 4.115 7 C -0.114 4.114 8 C -0.100 4.100 9 C -0.133 4.133 10 C 0.509 3.491 11 O -0.586 6.586 12 N -0.708 5.708 13 C 0.121 3.879 14 H 0.101 0.899 15 C 0.038 3.962 16 O -0.369 6.369 17 C 0.071 3.929 18 C 0.130 3.870 19 N -0.627 5.627 20 C -0.230 4.230 21 H 0.092 0.908 22 C -0.065 4.065 23 N -0.953 5.953 24 Si 0.983 3.017 25 H -0.272 1.272 26 H -0.296 1.296 27 H -0.278 1.278 28 C 0.140 3.860 29 C -0.106 4.106 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.057 0.943 34 H 0.058 0.942 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.055 0.945 39 H 0.056 0.944 40 H 0.071 0.929 41 H 0.074 0.926 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.116 0.884 45 H 0.116 0.884 46 H 0.415 0.585 47 H 0.069 0.931 48 H 0.100 0.900 49 H 0.072 0.928 50 H 0.041 0.959 51 H 0.249 0.751 52 H 0.007 0.993 53 H 0.045 0.955 54 H 0.077 0.923 55 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.252 -15.858 -4.648 31.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.109 4.109 4 H 0.089 0.911 5 C -0.207 4.207 6 C -0.153 4.153 7 C -0.151 4.151 8 C -0.139 4.139 9 C -0.173 4.173 10 C 0.298 3.702 11 O -0.467 6.467 12 N -0.359 5.359 13 C 0.015 3.985 14 H 0.119 0.881 15 C -0.039 4.039 16 O -0.287 6.287 17 C 0.030 3.970 18 C 0.004 3.996 19 N -0.354 5.354 20 C -0.357 4.357 21 H 0.110 0.890 22 C -0.258 4.258 23 N -0.602 5.602 24 Si 0.810 3.190 25 H -0.197 1.197 26 H -0.223 1.223 27 H -0.204 1.204 28 C 0.014 3.986 29 C -0.144 4.144 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.075 0.925 40 H 0.089 0.911 41 H 0.092 0.908 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.135 0.865 45 H 0.134 0.866 46 H 0.252 0.748 47 H 0.087 0.913 48 H 0.119 0.881 49 H 0.090 0.910 50 H 0.059 0.941 51 H 0.058 0.942 52 H 0.025 0.975 53 H 0.063 0.937 54 H 0.096 0.904 55 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -25.663 -16.327 -4.633 30.767 hybrid contribution 1.149 0.986 0.526 1.603 sum -24.514 -15.341 -4.106 29.208 Atomic orbital electron populations 1.21818 0.95542 1.01682 1.02014 1.21594 0.96231 0.96465 1.01685 1.21159 0.94973 0.96082 0.98669 0.91144 1.21931 1.01355 1.00685 0.96730 1.21628 0.95174 0.96936 1.01529 1.21612 0.93532 0.97081 1.02868 1.21291 0.96005 0.94659 1.01897 1.21748 0.88716 1.00345 1.06453 1.21480 0.91757 0.82675 0.74252 1.90685 1.71241 1.32901 1.51826 1.45947 1.06263 1.09791 1.73948 1.22307 0.81540 0.98821 0.95864 0.88077 1.24044 1.00605 0.82126 0.97169 1.88740 1.91379 1.18239 1.30334 1.23423 0.96543 0.92861 0.84163 1.22525 0.90966 0.90843 0.95240 1.45572 1.09477 1.36731 1.43669 1.19295 0.95674 1.08144 1.12610 0.89021 1.25677 0.96106 1.01329 1.02669 1.70026 1.04521 1.38374 1.47230 0.85098 0.76627 0.78391 0.78880 1.19710 1.22265 1.20365 1.22485 0.94294 0.88633 0.93203 1.22541 1.02305 0.93093 0.96472 0.92754 0.92719 0.92301 0.92383 0.92359 0.93142 0.92343 0.92082 0.92591 0.92547 0.91070 0.90774 0.92908 0.92929 0.86549 0.86615 0.74825 0.91293 0.88144 0.91029 0.94146 0.94232 0.97494 0.93655 0.90408 0.88414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.67 71.98 0.70 -0.67 16 2 C -0.12 -1.25 5.40 30.59 0.17 -1.08 16 3 C -0.09 -0.91 2.39 -10.79 -0.03 -0.94 16 4 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 5 C -0.15 -1.41 8.70 71.98 0.63 -0.78 16 6 C -0.12 -1.34 4.68 30.59 0.14 -1.20 16 7 C -0.11 -1.22 4.97 30.60 0.15 -1.07 16 8 C -0.10 -1.53 4.50 30.60 0.14 -1.39 16 9 C -0.13 -1.78 5.70 29.85 0.17 -1.61 16 10 C 0.51 11.19 7.83 87.66 0.69 11.88 16 11 O -0.59 -17.89 15.62 -3.04 -0.05 -17.94 16 12 N -0.71 -14.96 5.15 -435.92 -2.25 -17.20 16 13 C 0.12 3.21 3.51 46.39 0.16 3.37 16 14 H 0.10 2.83 7.54 -2.38 -0.02 2.81 16 15 C 0.04 1.10 7.43 72.69 0.54 1.64 16 16 O -0.37 -12.73 11.32 -148.98 -1.69 -14.41 16 17 C 0.07 2.65 1.66 -10.83 -0.02 2.63 16 18 C 0.13 5.15 8.20 83.40 0.68 5.83 16 19 N -0.63 -31.86 3.74 -739.10 -2.76 -34.62 16 20 C -0.23 -12.62 10.74 84.04 0.90 -11.72 16 21 H 0.09 4.72 7.83 -2.91 -0.02 4.70 16 22 C -0.06 -3.63 5.50 84.86 0.47 -3.17 16 23 N -0.95 -57.46 11.51 21.65 0.25 -57.21 16 24 Si 0.98 44.92 29.55 68.60 2.03 46.95 16 25 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 26 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 27 H -0.28 -12.27 7.11 99.48 0.71 -11.56 16 28 C 0.14 6.87 6.92 83.49 0.58 7.45 16 29 C -0.11 -3.32 6.11 31.39 0.19 -3.12 16 30 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.06 0.50 6.56 -2.39 -0.02 0.48 16 33 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 34 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.05 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.06 0.50 6.57 -2.39 -0.02 0.49 16 37 H 0.06 0.53 6.57 -2.39 -0.02 0.51 16 38 H 0.06 0.72 8.14 -2.38 -0.02 0.71 16 39 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 40 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.07 0.69 6.57 -2.39 -0.02 0.67 16 42 H 0.05 0.97 8.10 -2.38 -0.02 0.95 16 43 H 0.05 0.97 8.10 -2.39 -0.02 0.95 16 44 H 0.12 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.12 1.09 8.14 -2.39 -0.02 1.07 16 46 H 0.41 6.93 8.62 -92.71 -0.80 6.13 16 47 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 48 H 0.10 2.64 8.14 -2.38 -0.02 2.62 16 49 H 0.07 2.45 7.91 -2.39 -0.02 2.43 16 50 H 0.04 1.62 8.14 -2.39 -0.02 1.61 16 51 H 0.25 14.63 8.31 -92.70 -0.77 13.86 16 52 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 53 H 0.05 2.45 6.93 -2.39 -0.02 2.44 16 54 H 0.08 2.76 7.82 -2.39 -0.02 2.74 16 55 H 0.10 2.77 7.69 -2.39 -0.02 2.75 16 Total: -1.00 -70.01 429.38 1.83 -68.17 By element: Atomic # 1 Polarization: 20.17 SS G_CDS: 0.04 Total: 20.21 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 6.26 Total: 6.04 kcal Atomic # 7 Polarization: -104.27 SS G_CDS: -4.76 Total: -109.03 kcal Atomic # 8 Polarization: -30.62 SS G_CDS: -1.73 Total: -32.35 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 2.03 Total: 46.95 kcal Total: -70.01 1.83 -68.17 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755061168.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.262 kcal (2) G-P(sol) polarization free energy of solvation -70.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds