Wall clock time and date at job start Tue Mar 31 2020 21:55:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46826 * 2 1 4 4 H 1.08997 * 109.47834 * 305.00097 * 3 2 1 5 5 C 1.53003 * 109.47068 * 65.00703 * 3 2 1 6 6 C 1.52997 * 109.47068 * 179.97438 * 5 3 2 7 7 C 1.53000 * 109.46718 * 299.99089 * 6 5 3 8 8 H 1.08998 * 109.47270 * 300.00135 * 7 6 5 9 9 C 1.50703 * 109.46987 * 180.02562 * 7 6 5 10 10 O 1.21281 * 120.00295 * 240.00069 * 9 7 6 11 11 N 1.34777 * 119.99835 * 59.99962 * 9 7 6 12 12 C 1.46504 * 120.00051 * 175.30104 * 11 9 7 13 13 C 1.53000 * 109.53814 * 62.01335 * 12 11 9 14 14 N 1.46500 * 109.47332 * 58.48398 * 13 12 11 15 15 C 1.36934 * 120.00515 * 174.83598 * 14 13 12 16 16 H 1.08007 * 119.99742 * 359.97438 * 15 14 13 17 17 C 1.38809 * 120.00495 * 179.97438 * 15 14 13 18 18 N 1.31624 * 119.99742 * 0.02562 * 17 15 14 19 19 Si 1.86792 * 120.00293 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.47483 * 180.02562 * 19 17 15 21 21 H 1.48507 * 109.47375 * 299.99963 * 19 17 15 22 22 H 1.48501 * 109.47195 * 60.00167 * 19 17 15 23 23 C 1.53176 * 109.54559 * 182.18938 * 12 11 9 24 24 C 1.53094 * 109.15622 * 63.06558 * 23 12 11 25 25 O 1.42906 * 109.48618 * 57.47763 * 24 23 12 26 26 C 1.42902 * 114.09711 * 298.88448 * 25 24 23 27 27 C 1.53093 * 109.41184 * 61.15769 * 26 25 24 28 28 C 1.52999 * 109.47104 * 60.00763 * 7 6 5 29 29 C 1.53000 * 109.46718 * 184.99792 * 3 2 1 30 30 H 1.09001 * 109.46817 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46974 * 299.99735 * 1 2 3 32 32 H 1.09000 * 109.47066 * 60.00224 * 1 2 3 33 33 H 1.08996 * 109.46974 * 240.00265 * 2 1 3 34 34 H 1.08999 * 109.46991 * 120.00319 * 2 1 3 35 35 H 1.09007 * 109.46687 * 299.99388 * 5 3 2 36 36 H 1.08997 * 109.47288 * 59.99059 * 5 3 2 37 37 H 1.09007 * 109.46923 * 180.02562 * 6 5 3 38 38 H 1.08997 * 109.47834 * 59.99394 * 6 5 3 39 39 H 0.96999 * 120.00478 * 355.31106 * 11 9 7 40 40 H 1.08994 * 109.47674 * 298.48382 * 13 12 11 41 41 H 1.09003 * 109.46970 * 178.48042 * 13 12 11 42 42 H 0.97004 * 119.99657 * 354.83553 * 14 13 12 43 43 H 0.96998 * 120.00199 * 179.97438 * 18 17 15 44 44 H 1.08996 * 109.52528 * 182.88702 * 23 12 11 45 45 H 1.09008 * 109.52184 * 303.07176 * 23 12 11 46 46 H 1.09000 * 109.41225 * 297.49503 * 24 23 12 47 47 H 1.08998 * 109.49454 * 177.50634 * 24 23 12 48 48 H 1.08996 * 109.48404 * 301.17658 * 26 25 24 49 49 H 1.08998 * 109.49130 * 181.14241 * 26 25 24 50 50 H 1.09003 * 109.52449 * 182.48191 * 27 26 25 51 51 H 1.08998 * 109.57320 * 62.33245 * 27 26 25 52 52 H 1.08998 * 109.47570 * 59.99555 * 28 7 6 53 53 H 1.08997 * 109.47116 * 179.97438 * 28 7 6 54 54 H 1.08999 * 109.47377 * 60.00483 * 29 3 2 55 55 H 1.09001 * 109.47762 * 300.00215 * 29 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 1.6353 2.1265 1.3075 6 6 2.1458 3.5688 1.3077 7 6 3.6706 3.5700 1.1824 8 1 4.1048 3.0307 2.0242 9 6 4.1736 4.9906 1.1833 10 8 4.7946 5.4147 0.2317 11 7 3.9332 5.7899 2.2415 12 6 4.5088 7.1363 2.2883 13 6 3.9695 7.9642 1.1201 14 7 2.5078 8.0238 1.1974 15 6 1.8065 8.8008 0.3145 16 1 2.3310 9.3701 -0.4387 17 6 0.4214 8.8568 0.3874 18 7 -0.2178 8.1634 1.3055 19 14 -0.5352 9.9173 -0.8165 20 1 -1.9878 9.8052 -0.5292 21 1 -0.1109 11.3334 -0.6743 22 1 -0.2673 9.4572 -2.2028 23 6 4.1306 7.8096 3.6111 24 6 4.7427 7.0189 4.7703 25 8 6.1599 6.9456 4.6016 26 6 6.5714 6.2826 3.4045 27 6 6.0346 7.0450 2.1903 28 6 4.0754 2.8861 -0.1251 29 6 3.5648 1.4443 -0.1257 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8899 35 1 0.5489 2.1252 1.3970 36 1 2.0699 1.5874 2.1492 37 1 1.8578 4.0559 2.2394 38 1 1.7116 4.1081 0.4660 39 1 3.3792 5.4737 2.9723 40 1 4.2649 7.5003 0.1790 41 1 4.3775 8.9737 1.1713 42 1 2.0367 7.5127 1.8740 43 1 -1.1856 8.2028 1.3568 44 1 4.5155 8.8293 3.6240 45 1 3.0455 7.8277 3.7135 46 1 4.3255 6.0119 4.7821 47 1 4.5141 7.5180 5.7119 48 1 6.1782 5.2661 3.3984 49 1 7.6601 6.2515 3.3619 50 1 6.3101 6.5168 1.2775 51 1 6.4592 8.0487 2.1724 52 1 3.6412 3.4254 -0.9669 53 1 5.1617 2.8874 -0.2146 54 1 3.8532 0.9570 -1.0571 55 1 3.9995 0.9053 0.7161 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755099565.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:55:16 Heat of formation + Delta-G solvation = -125.198224 kcal Electronic energy + Delta-G solvation = -32254.450287 eV Core-core repulsion = 28289.203599 eV Total energy + Delta-G solvation = -3965.246688 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.89872 -40.23443 -38.87144 -37.21574 -35.46634 -34.88605 -33.19355 -32.31076 -32.05048 -31.52375 -30.00993 -28.18048 -25.64162 -25.25408 -24.57653 -23.57201 -23.12235 -22.54394 -21.13376 -20.62961 -20.26689 -19.27850 -18.33795 -17.17373 -17.01959 -16.87392 -16.55290 -16.26773 -15.94122 -15.63487 -15.41717 -15.35111 -15.08064 -14.99075 -14.86886 -14.39457 -14.18823 -14.09321 -13.84539 -13.68536 -13.48545 -13.24449 -13.11208 -12.99374 -12.82587 -12.78679 -12.71811 -12.44168 -12.30641 -12.16120 -12.10711 -11.99865 -11.97407 -11.64553 -11.61048 -11.37012 -11.33114 -11.13860 -10.99555 -10.82471 -10.63597 -10.30443 -9.86773 -8.95560 -7.96920 -5.22686 1.42437 1.44656 1.50681 1.77067 2.27096 2.53126 2.96277 3.35472 3.54206 3.66721 3.71865 3.77080 3.79698 3.89593 4.00432 4.10142 4.14542 4.21756 4.25194 4.29558 4.41576 4.46468 4.48159 4.55938 4.60265 4.62469 4.67430 4.74559 4.76515 4.79258 4.80345 4.83403 4.86684 4.96650 5.06709 5.08065 5.11801 5.15348 5.17471 5.19160 5.21484 5.24954 5.28422 5.31240 5.36951 5.42292 5.44600 5.56634 5.64893 5.70100 6.24741 6.25554 6.67804 7.33355 7.40578 8.06970 8.36714 9.25547 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.007066 B = 0.004844 C = 0.003243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3961.645304 B = 5778.905451 C = 8632.580998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.112 4.112 3 C -0.091 4.091 4 H 0.046 0.954 5 C -0.104 4.104 6 C -0.105 4.105 7 C -0.094 4.094 8 H 0.125 0.875 9 C 0.517 3.483 10 O -0.572 6.572 11 N -0.706 5.706 12 C 0.181 3.819 13 C 0.145 3.855 14 N -0.726 5.726 15 C -0.247 4.247 16 H 0.060 0.940 17 C -0.063 4.063 18 N -0.959 5.959 19 Si 0.965 3.035 20 H -0.289 1.289 21 H -0.279 1.279 22 H -0.287 1.287 23 C -0.147 4.147 24 C 0.067 3.933 25 O -0.392 6.392 26 C 0.073 3.927 27 C -0.157 4.157 28 C -0.094 4.094 29 C -0.103 4.103 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.041 0.959 33 H 0.064 0.936 34 H 0.075 0.925 35 H 0.064 0.936 36 H 0.086 0.914 37 H 0.068 0.932 38 H 0.029 0.971 39 H 0.405 0.595 40 H 0.016 0.984 41 H 0.016 0.984 42 H 0.378 0.622 43 H 0.252 0.748 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.113 0.887 48 H 0.056 0.944 49 H 0.108 0.892 50 H 0.078 0.922 51 H 0.075 0.925 52 H 0.034 0.966 53 H 0.065 0.935 54 H 0.069 0.931 55 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.105 -17.109 6.840 20.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.149 4.149 3 C -0.110 4.110 4 H 0.064 0.936 5 C -0.141 4.141 6 C -0.143 4.143 7 C -0.115 4.115 8 H 0.143 0.857 9 C 0.305 3.695 10 O -0.451 6.451 11 N -0.358 5.358 12 C 0.095 3.905 13 C 0.017 3.983 14 N -0.369 5.369 15 C -0.379 4.379 16 H 0.078 0.922 17 C -0.256 4.256 18 N -0.610 5.610 19 Si 0.794 3.206 20 H -0.215 1.215 21 H -0.205 1.205 22 H -0.213 1.213 23 C -0.185 4.185 24 C -0.010 4.010 25 O -0.311 6.311 26 C -0.004 4.004 27 C -0.196 4.196 28 C -0.132 4.132 29 C -0.140 4.140 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.061 0.939 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.105 0.895 37 H 0.087 0.913 38 H 0.048 0.952 39 H 0.242 0.758 40 H 0.034 0.966 41 H 0.033 0.967 42 H 0.211 0.789 43 H 0.060 0.940 44 H 0.095 0.905 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.131 0.869 48 H 0.074 0.926 49 H 0.126 0.874 50 H 0.096 0.904 51 H 0.093 0.907 52 H 0.053 0.947 53 H 0.083 0.917 54 H 0.087 0.913 55 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.668 -16.604 6.174 20.181 hybrid contribution -1.568 0.971 -0.959 2.079 sum 8.100 -15.634 5.215 18.363 Atomic orbital electron populations 1.21850 0.96255 1.01798 1.01542 1.21509 0.95588 0.95159 1.02640 1.21219 0.95756 0.96539 0.97469 0.93572 1.21579 1.00865 0.93410 0.98260 1.21437 0.92834 0.98607 1.01419 1.21356 0.97178 0.91148 1.01789 0.85725 1.21144 0.78462 0.88661 0.81276 1.90610 1.42901 1.76559 1.35025 1.45935 1.52692 1.14341 1.22827 1.20378 0.93033 0.82162 0.94968 1.21101 0.84506 0.95877 0.96794 1.42212 1.00838 1.55354 1.38538 1.19470 0.89836 1.19459 1.09164 0.92183 1.25352 0.97034 1.02237 1.01015 1.69754 1.07339 1.46521 1.37352 0.85347 0.77606 0.78927 0.78680 1.21508 1.20517 1.21342 1.22328 1.01988 1.00540 0.93638 1.22661 0.80557 0.99823 0.97933 1.87899 1.22608 1.79211 1.41369 1.22524 1.00513 0.94626 0.82693 1.22456 0.93809 1.02625 1.00730 1.21262 1.00706 0.96148 0.95126 1.21541 0.94767 0.94718 1.03004 0.91912 0.92580 0.93934 0.91714 0.90606 0.91755 0.89508 0.91298 0.95211 0.75848 0.96580 0.96660 0.78856 0.93957 0.90525 0.90876 0.91743 0.86936 0.92590 0.87353 0.90356 0.90653 0.94689 0.91657 0.91265 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.55 9.67 71.98 0.70 -1.85 16 2 C -0.11 -1.70 5.40 30.59 0.17 -1.54 16 3 C -0.09 -1.78 2.19 -10.79 -0.02 -1.80 16 4 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 5 C -0.10 -2.06 4.96 30.59 0.15 -1.91 16 6 C -0.10 -2.75 5.10 30.59 0.16 -2.60 16 7 C -0.09 -2.31 2.53 -11.54 -0.03 -2.33 16 8 H 0.12 2.21 8.14 -2.39 -0.02 2.19 16 9 C 0.52 16.75 6.56 87.66 0.57 17.32 16 10 O -0.57 -23.13 12.24 -3.03 -0.04 -23.17 16 11 N -0.71 -21.09 3.67 -422.38 -1.55 -22.64 16 12 C 0.18 5.96 0.32 3.72 0.00 5.96 16 13 C 0.14 6.44 4.98 86.38 0.43 6.87 16 14 N -0.73 -37.64 5.15 -343.45 -1.77 -39.41 16 15 C -0.25 -14.43 9.99 84.03 0.84 -13.59 16 16 H 0.06 3.51 7.83 -2.91 -0.02 3.49 16 17 C -0.06 -3.69 5.50 84.86 0.47 -3.22 16 18 N -0.96 -57.65 13.06 21.65 0.28 -57.37 16 19 Si 0.97 47.41 29.55 68.60 2.03 49.43 16 20 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 21 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 22 H -0.29 -13.96 7.11 99.48 0.71 -13.26 16 23 C -0.15 -4.34 4.76 30.68 0.15 -4.19 16 24 C 0.07 1.50 6.67 72.01 0.48 1.98 16 25 O -0.39 -9.69 10.77 -148.98 -1.60 -11.30 16 26 C 0.07 1.69 6.68 72.01 0.48 2.17 16 27 C -0.16 -4.59 4.74 30.68 0.15 -4.44 16 28 C -0.09 -2.36 4.49 30.58 0.14 -2.22 16 29 C -0.10 -1.88 5.20 30.58 0.16 -1.72 16 30 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.06 0.93 6.56 -2.39 -0.02 0.91 16 32 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.06 1.34 6.57 -2.38 -0.02 1.32 16 36 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.07 1.76 7.46 -2.38 -0.02 1.74 16 38 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.41 10.31 6.89 -92.71 -0.64 9.67 16 40 H 0.02 0.82 6.21 -2.39 -0.01 0.81 16 41 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.38 19.82 6.54 -92.71 -0.61 19.21 16 43 H 0.25 14.70 8.31 -92.71 -0.77 13.93 16 44 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.07 2.44 7.18 -2.38 -0.02 2.42 16 46 H 0.06 1.24 7.15 -2.39 -0.02 1.22 16 47 H 0.11 2.15 8.14 -2.39 -0.02 2.13 16 48 H 0.06 1.21 7.75 -2.39 -0.02 1.19 16 49 H 0.11 2.11 8.14 -2.39 -0.02 2.09 16 50 H 0.08 2.57 6.13 -2.39 -0.01 2.56 16 51 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 52 H 0.03 1.11 8.10 -2.39 -0.02 1.09 16 53 H 0.06 1.63 8.10 -2.39 -0.02 1.61 16 54 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 55 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -70.64 408.41 1.95 -68.70 By element: Atomic # 1 Polarization: 43.24 SS G_CDS: -0.38 Total: 42.86 kcal Atomic # 6 Polarization: -12.09 SS G_CDS: 4.98 Total: -7.11 kcal Atomic # 7 Polarization: -116.38 SS G_CDS: -3.04 Total: -119.42 kcal Atomic # 8 Polarization: -32.82 SS G_CDS: -1.64 Total: -34.46 kcal Atomic # 14 Polarization: 47.41 SS G_CDS: 2.03 Total: 49.43 kcal Total: -70.64 1.95 -68.70 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755099565.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.503 kcal (2) G-P(sol) polarization free energy of solvation -70.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.947 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds