Wall clock time and date at job start Tue Mar 31 2020 22:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.09001 * 109.47610 * 54.97429 * 3 2 1 5 5 C 1.53094 * 109.48409 * 175.00102 * 3 2 1 6 6 C 1.53178 * 109.16400 * 177.59429 * 5 3 2 7 7 H 1.09005 * 109.54221 * 62.97572 * 6 5 3 8 8 C 1.53001 * 109.54495 * 183.15179 * 6 5 3 9 9 C 1.50702 * 109.47227 * 185.00049 * 8 6 5 10 10 O 1.21277 * 119.99626 * 359.97438 * 9 8 6 11 11 N 1.34774 * 119.99801 * 180.02562 * 9 8 6 12 12 C 1.46923 * 120.63121 * 359.71416 * 11 9 8 13 13 C 1.53623 * 108.54187 * 126.37057 * 12 11 9 14 14 C 1.53041 * 109.24168 * 54.86130 * 13 12 11 15 15 C 1.52998 * 109.46449 * 178.49048 * 14 13 12 16 16 N 1.46500 * 109.46127 * 58.52562 * 14 13 12 17 17 C 1.36938 * 119.99900 * 59.93970 * 16 14 13 18 18 H 1.07998 * 119.99768 * 359.97438 * 17 16 14 19 19 C 1.38806 * 119.99928 * 179.97438 * 17 16 14 20 20 N 1.31621 * 119.99917 * 180.02562 * 19 17 16 21 21 Si 1.86802 * 120.00355 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.47129 * 90.00208 * 21 19 17 23 23 H 1.48499 * 109.47431 * 210.00372 * 21 19 17 24 24 H 1.48502 * 109.46966 * 330.00281 * 21 19 17 25 25 C 1.53050 * 109.53280 * 298.50824 * 14 13 12 26 26 C 1.46928 * 120.62658 * 180.02562 * 11 9 8 27 27 C 1.53182 * 109.03802 * 303.02243 * 6 5 3 28 28 C 1.53093 * 109.16316 * 56.97792 * 27 6 5 29 29 O 1.42900 * 109.41414 * 302.39379 * 28 27 6 30 30 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 31 31 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 33 33 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 34 34 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 35 35 H 1.08999 * 109.52097 * 297.49570 * 5 3 2 36 36 H 1.08992 * 109.51813 * 57.68876 * 5 3 2 37 37 H 1.08994 * 109.46967 * 305.00134 * 8 6 5 38 38 H 1.08995 * 109.46711 * 64.99895 * 8 6 5 39 39 H 1.09000 * 109.58995 * 246.20291 * 12 11 9 40 40 H 1.08998 * 109.58959 * 6.63149 * 12 11 9 41 41 H 1.08993 * 109.63656 * 294.86756 * 13 12 11 42 42 H 1.09000 * 109.45563 * 174.73946 * 13 12 11 43 43 H 1.08992 * 109.47348 * 180.02562 * 15 14 13 44 44 H 1.08998 * 109.46824 * 300.06450 * 15 14 13 45 45 H 1.08999 * 109.47048 * 60.06223 * 15 14 13 46 46 H 0.96998 * 120.00276 * 239.93017 * 16 14 13 47 47 H 0.96996 * 119.99995 * 180.02562 * 20 19 17 48 48 H 1.08992 * 109.49796 * 301.41226 * 25 14 13 49 49 H 1.09001 * 109.49477 * 181.31694 * 25 14 13 50 50 H 1.08989 * 109.58608 * 353.36671 * 26 11 9 51 51 H 1.09000 * 109.58682 * 113.65462 * 26 11 9 52 52 H 1.08996 * 109.52211 * 176.88955 * 27 6 5 53 53 H 1.09004 * 109.51648 * 297.01450 * 27 6 5 54 54 H 1.08993 * 109.48025 * 62.37888 * 28 27 6 55 55 H 1.08999 * 109.47811 * 182.41536 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6051 1.9817 0.8415 5 6 3.5658 1.4446 0.1258 6 6 4.0734 2.8885 0.0646 7 1 3.6804 3.4494 0.9126 8 6 5.6027 2.8959 0.1105 9 6 6.0965 4.3183 0.1741 10 8 5.3034 5.2357 0.1814 11 7 7.4196 4.5707 0.2217 12 6 8.3923 3.4696 0.2187 13 6 9.3981 3.7095 -0.9174 14 6 10.0213 5.0977 -0.7546 15 6 11.0516 5.3271 -1.8622 16 7 10.6803 5.1869 0.5508 17 6 11.6990 4.3269 0.8636 18 1 12.0163 3.5827 0.1482 19 6 12.3238 4.4117 2.1002 20 7 13.3032 3.5854 2.4008 21 14 11.7755 5.6994 3.3375 22 1 10.7027 5.1359 4.1959 23 1 12.9295 6.0959 4.1836 24 1 11.2582 6.8900 2.6163 25 6 8.9272 6.1639 -0.8473 26 6 7.9162 5.9521 0.2846 27 6 3.5968 3.5307 -1.2420 28 6 2.0699 3.4480 -1.3149 29 8 1.6632 2.0813 -1.2215 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 3.8534 0.9975 1.0773 36 1 3.9995 0.8710 -0.6933 37 1 5.9422 2.3536 0.9929 38 1 5.9953 2.4146 -0.7852 39 1 8.9160 3.4421 1.1743 40 1 7.8741 2.5246 0.0563 41 1 8.8865 3.6508 -1.8780 42 1 10.1809 2.9521 -0.8752 43 1 11.4959 6.3156 -1.7461 44 1 11.8309 4.5679 -1.7963 45 1 10.5616 5.2615 -2.8335 46 1 10.3952 5.8551 1.1934 47 1 13.7395 3.6444 3.2650 48 1 8.4200 6.0821 -1.8085 49 1 9.3748 7.1534 -0.7546 50 1 7.0837 6.6454 0.1656 51 1 8.3997 6.1231 1.2464 52 1 3.9068 4.5753 -1.2686 53 1 4.0321 2.9999 -2.0886 54 1 1.6355 4.0137 -0.4907 55 1 1.7281 3.8650 -2.2622 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755134471.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:42 Heat of formation + Delta-G solvation = -107.962887 kcal Electronic energy + Delta-G solvation = -31286.254690 eV Core-core repulsion = 27321.755382 eV Total energy + Delta-G solvation = -3964.499308 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.53603 -40.44892 -39.24714 -36.12002 -35.62508 -34.84591 -34.21343 -32.30846 -31.55241 -30.74731 -30.06839 -28.77447 -25.74154 -25.26180 -24.48909 -24.26701 -23.67862 -22.01051 -21.21083 -20.51942 -19.76485 -19.35201 -18.07724 -17.36404 -16.95661 -16.82410 -16.65156 -16.35952 -15.91535 -15.61090 -15.48789 -15.15989 -15.05179 -14.90665 -14.54305 -14.39643 -14.32836 -14.00897 -13.95586 -13.70721 -13.66664 -13.27539 -12.96411 -12.81484 -12.71952 -12.67081 -12.59940 -12.58250 -12.42149 -12.15360 -12.04791 -11.99364 -11.95979 -11.78003 -11.71598 -11.62869 -11.40978 -11.15057 -11.12256 -10.90180 -10.65607 -10.29787 -9.61425 -9.18616 -7.94032 -5.24546 1.38471 1.38715 1.46103 1.66843 2.06974 2.52095 2.88777 3.38130 3.46309 3.56710 3.67296 3.78909 3.88422 3.94745 4.03396 4.06861 4.13881 4.24230 4.25595 4.29427 4.40145 4.41206 4.45198 4.50661 4.56223 4.63125 4.65784 4.69694 4.75798 4.79895 4.84599 4.87234 4.92340 4.97268 4.98787 5.02880 5.04764 5.09596 5.13792 5.16910 5.18660 5.23955 5.30599 5.32107 5.34583 5.44751 5.47673 5.56377 5.68348 5.90150 6.30850 6.35548 6.51378 7.16776 7.21443 7.94114 8.11609 9.27535 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018041 B = 0.002548 C = 0.002443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1551.651281 B =10984.297480 C =11460.677105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C 0.086 3.914 4 H 0.053 0.947 5 C -0.140 4.140 6 C -0.068 4.068 7 H 0.061 0.939 8 C -0.130 4.130 9 C 0.510 3.490 10 O -0.579 6.579 11 N -0.604 5.604 12 C 0.119 3.881 13 C -0.128 4.128 14 C 0.192 3.808 15 C -0.144 4.144 16 N -0.743 5.743 17 C -0.195 4.195 18 H 0.068 0.932 19 C -0.063 4.063 20 N -0.985 5.985 21 Si 0.936 3.064 22 H -0.286 1.286 23 H -0.306 1.306 24 H -0.257 1.257 25 C -0.121 4.121 26 C 0.114 3.886 27 C -0.149 4.149 28 C 0.064 3.936 29 O -0.393 6.393 30 H 0.052 0.948 31 H 0.063 0.937 32 H 0.048 0.952 33 H 0.091 0.909 34 H 0.068 0.932 35 H 0.087 0.913 36 H 0.078 0.922 37 H 0.108 0.892 38 H 0.112 0.888 39 H 0.055 0.945 40 H 0.104 0.896 41 H 0.078 0.922 42 H 0.060 0.940 43 H 0.044 0.956 44 H 0.035 0.965 45 H 0.069 0.931 46 H 0.360 0.640 47 H 0.252 0.748 48 H 0.086 0.914 49 H 0.078 0.922 50 H 0.086 0.914 51 H 0.050 0.950 52 H 0.073 0.927 53 H 0.067 0.933 54 H 0.045 0.955 55 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.324 -3.950 -8.079 24.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.152 4.152 3 C 0.028 3.972 4 H 0.071 0.929 5 C -0.178 4.178 6 C -0.087 4.087 7 H 0.080 0.920 8 C -0.170 4.170 9 C 0.301 3.699 10 O -0.460 6.460 11 N -0.336 5.336 12 C -0.003 4.003 13 C -0.168 4.168 14 C 0.103 3.897 15 C -0.204 4.204 16 N -0.386 5.386 17 C -0.327 4.327 18 H 0.086 0.914 19 C -0.254 4.254 20 N -0.637 5.637 21 Si 0.766 3.234 22 H -0.213 1.213 23 H -0.233 1.233 24 H -0.182 1.182 25 C -0.159 4.159 26 C -0.008 4.008 27 C -0.187 4.187 28 C -0.012 4.012 29 O -0.313 6.313 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.109 0.891 34 H 0.087 0.913 35 H 0.106 0.894 36 H 0.096 0.904 37 H 0.126 0.874 38 H 0.130 0.870 39 H 0.073 0.927 40 H 0.122 0.878 41 H 0.097 0.903 42 H 0.079 0.921 43 H 0.063 0.937 44 H 0.054 0.946 45 H 0.088 0.912 46 H 0.194 0.806 47 H 0.061 0.939 48 H 0.105 0.895 49 H 0.097 0.903 50 H 0.104 0.896 51 H 0.069 0.931 52 H 0.091 0.909 53 H 0.086 0.914 54 H 0.063 0.937 55 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -23.691 -3.717 -8.255 25.362 hybrid contribution 0.844 1.068 1.478 2.009 sum -22.848 -2.649 -6.777 23.978 Atomic orbital electron populations 1.21709 0.95317 1.01969 1.01658 1.21573 0.96678 0.93555 1.03385 1.22257 0.93770 0.94560 0.86569 0.92910 1.22264 0.95862 0.95731 1.03916 1.20889 0.93119 0.96493 0.98244 0.92038 1.21794 0.96818 0.92471 1.05871 1.21186 0.81257 0.92616 0.74860 1.90605 1.54868 1.48169 1.52349 1.48221 1.05816 1.07609 1.71949 1.21766 0.89775 0.89169 0.99617 1.22262 0.98004 0.98481 0.98051 1.19840 0.90974 0.93891 0.85025 1.22116 0.99149 1.00828 0.98262 1.42942 1.40633 1.39813 1.15239 1.18890 1.06999 1.08605 0.98177 0.91421 1.25257 0.99201 1.01129 0.99839 1.69845 1.28519 1.42196 1.23150 0.85691 0.76772 0.80895 0.80054 1.21267 1.23312 1.18159 1.22050 0.95491 0.99210 0.99198 1.21463 0.97379 0.83507 0.98497 1.22263 0.96634 1.02241 0.97530 1.22554 0.93821 0.82603 1.02235 1.87885 1.78943 1.25152 1.39306 0.92847 0.91749 0.93279 0.89104 0.91283 0.89401 0.90366 0.87425 0.87027 0.92653 0.87752 0.90331 0.92110 0.93669 0.94560 0.91205 0.80624 0.93873 0.89511 0.90296 0.89560 0.93147 0.90893 0.91381 0.93671 0.88182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.81 71.98 0.71 -1.24 16 2 C -0.11 -1.50 5.64 30.59 0.17 -1.33 16 3 C 0.09 1.40 2.64 30.63 0.08 1.48 16 4 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 5 C -0.14 -2.11 4.71 30.69 0.14 -1.96 16 6 C -0.07 -1.30 1.92 -10.67 -0.02 -1.32 16 7 H 0.06 1.38 7.95 -2.38 -0.02 1.36 16 8 C -0.13 -2.47 3.53 29.85 0.11 -2.37 16 9 C 0.51 13.56 7.44 87.66 0.65 14.21 16 10 O -0.58 -18.58 13.42 -3.02 -0.04 -18.62 16 11 N -0.60 -16.64 2.97 -818.01 -2.43 -19.07 16 12 C 0.12 3.29 6.11 86.51 0.53 3.82 16 13 C -0.13 -3.73 4.72 30.82 0.15 -3.58 16 14 C 0.19 6.20 0.74 3.63 0.00 6.21 16 15 C -0.14 -4.58 8.44 71.98 0.61 -3.97 16 16 N -0.74 -30.64 3.93 -303.22 -1.19 -31.84 16 17 C -0.20 -10.00 9.16 84.03 0.77 -9.23 16 18 H 0.07 3.78 6.93 -2.91 -0.02 3.76 16 19 C -0.06 -3.54 5.50 84.86 0.47 -3.07 16 20 N -0.99 -60.80 13.97 21.65 0.30 -60.49 16 21 Si 0.94 44.37 27.73 68.60 1.90 46.27 16 22 H -0.29 -13.42 7.11 99.48 0.71 -12.72 16 23 H -0.31 -15.09 7.11 99.48 0.71 -14.39 16 24 H -0.26 -11.07 6.52 99.48 0.65 -10.42 16 25 C -0.12 -3.28 4.96 30.69 0.15 -3.13 16 26 C 0.11 3.32 6.15 86.38 0.53 3.85 16 27 C -0.15 -3.00 5.13 30.69 0.16 -2.84 16 28 C 0.06 1.22 6.84 72.01 0.49 1.71 16 29 O -0.39 -7.90 9.94 -148.98 -1.48 -9.38 16 30 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.67 16 32 H 0.05 0.76 7.83 -2.38 -0.02 0.74 16 33 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.11 1.79 7.93 -2.39 -0.02 1.77 16 38 H 0.11 1.75 7.70 -2.39 -0.02 1.74 16 39 H 0.06 1.91 7.73 -2.39 -0.02 1.90 16 40 H 0.10 2.19 5.93 -2.39 -0.01 2.18 16 41 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.06 2.04 7.31 -2.39 -0.02 2.02 16 43 H 0.04 1.45 8.14 -2.39 -0.02 1.44 16 44 H 0.04 1.32 7.27 -2.39 -0.02 1.30 16 45 H 0.07 1.76 8.14 -2.39 -0.02 1.75 16 46 H 0.36 14.97 4.33 -92.71 -0.40 14.57 16 47 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 48 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 49 H 0.08 2.06 8.14 -2.39 -0.02 2.05 16 50 H 0.09 2.50 7.00 -2.39 -0.02 2.48 16 51 H 0.05 1.61 6.95 -2.39 -0.02 1.60 16 52 H 0.07 1.79 6.07 -2.39 -0.01 1.78 16 53 H 0.07 1.31 8.14 -2.38 -0.02 1.29 16 54 H 0.04 0.87 8.14 -2.39 -0.02 0.85 16 55 H 0.10 1.65 8.14 -2.39 -0.02 1.63 16 Total: -1.00 -65.95 407.51 3.15 -62.80 By element: Atomic # 1 Polarization: 32.70 SS G_CDS: 0.39 Total: 33.09 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 5.70 Total: -2.76 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -3.31 Total: -111.40 kcal Atomic # 8 Polarization: -26.48 SS G_CDS: -1.52 Total: -28.00 kcal Atomic # 14 Polarization: 44.37 SS G_CDS: 1.90 Total: 46.27 kcal Total: -65.95 3.15 -62.80 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755134471.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.161 kcal (2) G-P(sol) polarization free energy of solvation -65.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.112 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.802 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds