Wall clock time and date at job start Tue Mar 31 2020 22:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53004 * 109.47067 * 2 1 4 4 H 1.08998 * 109.47808 * 305.02179 * 3 2 1 5 5 C 1.53086 * 109.48127 * 185.00277 * 3 2 1 6 6 C 1.53176 * 109.16360 * 182.40847 * 5 3 2 7 7 H 1.09003 * 109.54254 * 297.02426 * 6 5 3 8 8 C 1.53005 * 109.54346 * 176.84766 * 6 5 3 9 9 C 1.50701 * 109.46987 * 175.17825 * 8 6 5 10 10 O 1.21279 * 120.00296 * 359.97438 * 9 8 6 11 11 N 1.34773 * 119.99838 * 180.02562 * 9 8 6 12 12 C 1.46927 * 120.62822 * 180.02562 * 11 9 8 13 13 C 1.53195 * 108.77535 * 126.41083 * 12 11 9 14 14 C 1.53045 * 109.31481 * 54.63273 * 13 12 11 15 15 C 1.53000 * 109.46380 * 178.62656 * 14 13 12 16 16 N 1.46504 * 109.45770 * 58.65236 * 14 13 12 17 17 C 1.36943 * 119.99781 * 180.02562 * 16 14 13 18 18 H 1.08002 * 119.99788 * 359.97438 * 17 16 14 19 19 C 1.38811 * 119.99622 * 180.27904 * 17 16 14 20 20 N 1.31614 * 120.00467 * 359.72375 * 19 17 16 21 21 Si 1.86801 * 119.99700 * 179.72266 * 19 17 16 22 22 H 1.48504 * 109.47306 * 359.97438 * 21 19 17 23 23 H 1.48499 * 109.47021 * 119.99661 * 21 19 17 24 24 H 1.48501 * 109.47039 * 240.00078 * 21 19 17 25 25 C 1.53043 * 109.53547 * 298.63904 * 14 13 12 26 26 C 1.46933 * 120.63157 * 0.02562 * 11 9 8 27 27 C 1.53179 * 109.10931 * 56.93582 * 6 5 3 28 28 C 1.53106 * 109.15526 * 303.15324 * 27 6 5 29 29 O 1.42894 * 109.48756 * 57.47481 * 28 27 6 30 30 H 1.09001 * 109.46942 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.46969 * 299.99554 * 1 2 3 32 32 H 1.08996 * 109.47437 * 60.00168 * 1 2 3 33 33 H 1.09000 * 109.46969 * 240.00445 * 2 1 3 34 34 H 1.08996 * 109.47437 * 119.99832 * 2 1 3 35 35 H 1.08998 * 109.52319 * 62.50212 * 5 3 2 36 36 H 1.09003 * 109.57420 * 302.34496 * 5 3 2 37 37 H 1.09000 * 109.47189 * 55.17633 * 8 6 5 38 38 H 1.08999 * 109.46742 * 295.17708 * 8 6 5 39 39 H 1.08991 * 109.59084 * 6.62490 * 12 11 9 40 40 H 1.08997 * 109.58551 * 246.19321 * 12 11 9 41 41 H 1.09000 * 109.50045 * 294.68124 * 13 12 11 42 42 H 1.09003 * 109.52361 * 174.59676 * 13 12 11 43 43 H 1.09002 * 109.46764 * 300.02812 * 15 14 13 44 44 H 1.09003 * 109.46827 * 60.02816 * 15 14 13 45 45 H 1.08995 * 109.46958 * 180.02562 * 15 14 13 46 46 H 0.97000 * 120.00410 * 0.02562 * 16 14 13 47 47 H 0.96995 * 120.00147 * 180.02562 * 20 19 17 48 48 H 1.09005 * 109.49493 * 181.31763 * 25 14 13 49 49 H 1.08999 * 109.49439 * 301.40190 * 25 14 13 50 50 H 1.09003 * 109.58373 * 353.37576 * 26 11 9 51 51 H 1.08997 * 109.58516 * 113.80391 * 26 11 9 52 52 H 1.08997 * 109.52119 * 62.97065 * 27 6 5 53 53 H 1.08999 * 109.51950 * 183.16230 * 27 6 5 54 54 H 1.09006 * 109.40225 * 297.49334 * 28 27 6 55 55 H 1.08998 * 109.48100 * 177.50913 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6052 1.9818 -0.8415 5 6 3.5657 1.4447 -0.1259 6 6 4.0733 2.8886 -0.0646 7 1 3.6803 3.4495 -0.9126 8 6 5.6026 2.8959 -0.1106 9 6 6.0966 4.3184 -0.1697 10 8 5.3036 5.2360 -0.1750 11 7 7.4196 4.5709 -0.2177 12 6 7.9164 5.9524 -0.2751 13 6 8.9285 6.1598 0.8562 14 6 10.0223 5.0939 0.7585 15 6 11.0535 5.3186 1.8662 16 7 10.6802 5.1879 -0.5472 17 6 11.6982 4.3286 -0.8644 18 1 12.0162 3.5818 -0.1519 19 6 12.3253 4.4215 -2.0992 20 7 11.9381 5.3319 -2.9673 21 14 13.7191 3.2544 -2.5290 22 1 13.9615 2.3322 -1.3904 23 1 13.3523 2.4679 -3.7341 24 1 14.9519 4.0354 -2.8038 25 6 9.3991 3.7050 0.9164 26 6 8.3925 3.4698 -0.2137 27 6 3.5968 3.5326 1.2410 28 6 2.0699 3.4479 1.3150 29 8 1.6633 2.0812 1.2216 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 3.8533 0.9975 -1.0774 36 1 4.0005 0.8707 0.6925 37 1 5.9421 2.3563 -0.9948 38 1 5.9953 2.4117 0.7836 39 1 7.0842 6.6454 -0.1523 40 1 8.4013 6.1267 -1.2355 41 1 8.4221 6.0744 1.8176 42 1 9.3762 7.1497 0.7674 43 1 11.4980 6.3075 1.7536 44 1 10.5642 5.2486 2.8377 45 1 11.8328 4.5598 1.7965 46 1 10.3948 5.8588 -1.1869 47 1 12.3761 5.3965 -3.8303 48 1 10.1817 2.9477 0.8702 49 1 8.8884 3.6427 1.8773 50 1 7.8742 2.5249 -0.0504 51 1 8.9162 3.4414 -1.1692 52 1 4.0313 3.0024 2.0884 53 1 3.9067 4.5774 1.2660 54 1 1.6355 4.0136 0.4907 55 1 1.7282 3.8650 2.2623 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755134472.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:49 Heat of formation + Delta-G solvation = -110.836065 kcal Electronic energy + Delta-G solvation = -31203.831986 eV Core-core repulsion = 27239.208088 eV Total energy + Delta-G solvation = -3964.623898 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.50194 -40.41895 -39.17153 -36.03775 -35.61268 -34.83981 -34.17070 -32.26749 -30.89737 -30.71709 -30.01972 -28.74091 -25.92861 -25.34609 -24.48814 -24.20576 -23.68986 -22.00665 -21.21177 -20.53407 -19.43956 -18.96015 -18.07380 -17.35759 -16.93225 -16.81468 -16.69625 -16.26957 -15.77472 -15.51421 -15.44802 -15.37769 -15.02526 -14.88329 -14.53790 -14.36734 -14.08920 -13.98924 -13.93973 -13.67837 -13.39063 -13.15462 -12.87922 -12.80273 -12.67163 -12.66101 -12.58766 -12.53860 -12.40915 -12.09018 -12.05585 -12.03720 -11.95252 -11.78430 -11.70887 -11.46083 -11.39978 -11.13719 -11.06979 -10.86496 -10.63511 -10.28946 -9.54154 -8.88177 -7.85100 -5.10642 1.48868 1.51010 1.58681 1.69238 2.10734 2.61530 2.89170 3.48494 3.49435 3.67972 3.79999 3.83681 3.93705 3.98913 4.04015 4.11173 4.21241 4.24850 4.28985 4.32582 4.41766 4.45478 4.46834 4.51943 4.56740 4.67662 4.70307 4.71155 4.76910 4.82045 4.85804 4.90391 4.93528 4.98092 5.03647 5.05223 5.06080 5.12703 5.14291 5.18746 5.19662 5.24814 5.32152 5.37366 5.39204 5.45356 5.48327 5.58985 5.67271 5.72876 6.35840 6.36932 6.56579 7.24162 7.44042 8.20750 8.43747 9.38863 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.017311 B = 0.002484 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.050929 B =11267.236417 C =12078.024501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.114 4.114 3 C 0.085 3.915 4 H 0.052 0.948 5 C -0.139 4.139 6 C -0.069 4.069 7 H 0.059 0.941 8 C -0.128 4.128 9 C 0.508 3.492 10 O -0.582 6.582 11 N -0.601 5.601 12 C 0.120 3.880 13 C -0.118 4.118 14 C 0.186 3.814 15 C -0.144 4.144 16 N -0.724 5.724 17 C -0.206 4.206 18 H 0.079 0.921 19 C -0.079 4.079 20 N -0.972 5.972 21 Si 0.957 3.043 22 H -0.264 1.264 23 H -0.300 1.300 24 H -0.305 1.305 25 C -0.129 4.129 26 C 0.120 3.880 27 C -0.149 4.149 28 C 0.065 3.935 29 O -0.392 6.392 30 H 0.064 0.936 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.091 0.909 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.080 0.920 40 H 0.047 0.953 41 H 0.082 0.918 42 H 0.070 0.930 43 H 0.038 0.962 44 H 0.067 0.933 45 H 0.042 0.958 46 H 0.370 0.630 47 H 0.244 0.756 48 H 0.067 0.933 49 H 0.075 0.925 50 H 0.105 0.895 51 H 0.052 0.948 52 H 0.068 0.932 53 H 0.072 0.928 54 H 0.044 0.956 55 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.988 -9.689 9.832 23.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.151 4.151 3 C 0.028 3.972 4 H 0.070 0.930 5 C -0.177 4.177 6 C -0.088 4.088 7 H 0.078 0.922 8 C -0.167 4.167 9 C 0.298 3.702 10 O -0.464 6.464 11 N -0.333 5.333 12 C -0.003 4.003 13 C -0.157 4.157 14 C 0.097 3.903 15 C -0.203 4.203 16 N -0.364 5.364 17 C -0.338 4.338 18 H 0.097 0.903 19 C -0.271 4.271 20 N -0.624 5.624 21 Si 0.789 3.211 22 H -0.189 1.189 23 H -0.228 1.228 24 H -0.233 1.233 25 C -0.169 4.169 26 C -0.002 4.002 27 C -0.187 4.187 28 C -0.012 4.012 29 O -0.312 6.312 30 H 0.083 0.917 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.109 0.891 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.125 0.875 38 H 0.131 0.869 39 H 0.098 0.902 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.088 0.912 43 H 0.057 0.943 44 H 0.085 0.915 45 H 0.061 0.939 46 H 0.203 0.797 47 H 0.053 0.947 48 H 0.086 0.914 49 H 0.094 0.906 50 H 0.123 0.877 51 H 0.071 0.929 52 H 0.087 0.913 53 H 0.090 0.910 54 H 0.062 0.938 55 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -19.363 -9.459 10.013 23.762 hybrid contribution 1.450 0.443 -1.256 1.968 sum -17.913 -9.016 8.757 21.883 Atomic orbital electron populations 1.21709 0.95332 1.01978 1.01644 1.21572 0.96663 0.93483 1.03418 1.22261 0.93777 0.94604 0.86556 0.92985 1.22257 0.95852 0.95607 1.03970 1.20890 0.93125 0.96569 0.98214 0.92216 1.21782 0.96807 0.92290 1.05859 1.21238 0.81263 0.92708 0.74946 1.90600 1.54940 1.48270 1.52542 1.48196 1.05841 1.07587 1.71703 1.21358 0.96979 0.83413 0.98570 1.21989 0.95726 0.99254 0.98705 1.19874 0.90972 0.93568 0.85933 1.22140 0.99306 1.00677 0.98215 1.42696 1.39874 1.39762 1.14066 1.19465 1.07719 1.08950 0.97663 0.90331 1.25356 1.02823 1.01173 0.97701 1.69808 1.45891 1.38567 1.08125 0.85290 0.79508 0.78637 0.77693 1.18874 1.22821 1.23275 1.22217 0.98097 0.98721 0.97851 1.21667 0.89832 0.88992 0.99690 1.22268 0.96669 1.02218 0.97551 1.22549 0.93799 0.82623 1.02219 1.87881 1.78921 1.25109 1.39298 0.91707 0.93288 0.92888 0.89079 0.91208 0.89380 0.90235 0.87455 0.86904 0.90180 0.93469 0.89959 0.91152 0.94307 0.91453 0.93882 0.79726 0.94658 0.91422 0.90603 0.87721 0.92949 0.91303 0.90991 0.93768 0.88139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.81 71.98 0.71 -1.28 16 2 C -0.11 -1.52 5.64 30.60 0.17 -1.35 16 3 C 0.09 1.44 2.64 30.62 0.08 1.52 16 4 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 5 C -0.14 -2.17 4.71 30.68 0.14 -2.02 16 6 C -0.07 -1.39 1.92 -10.67 -0.02 -1.41 16 7 H 0.06 1.43 7.96 -2.39 -0.02 1.41 16 8 C -0.13 -2.59 3.53 29.85 0.11 -2.48 16 9 C 0.51 14.64 7.44 87.66 0.65 15.29 16 10 O -0.58 -20.20 13.40 -3.03 -0.04 -20.24 16 11 N -0.60 -18.20 2.97 -818.97 -2.43 -20.64 16 12 C 0.12 3.98 6.16 86.36 0.53 4.51 16 13 C -0.12 -3.63 4.96 30.67 0.15 -3.48 16 14 C 0.19 6.37 0.74 3.63 0.00 6.37 16 15 C -0.14 -4.65 8.44 71.98 0.61 -4.05 16 16 N -0.72 -32.34 4.13 -303.20 -1.25 -33.59 16 17 C -0.21 -10.24 8.68 84.03 0.73 -9.51 16 18 H 0.08 3.75 6.70 -2.91 -0.02 3.73 16 19 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 20 N -0.97 -57.39 13.06 21.65 0.28 -57.11 16 21 Si 0.96 44.45 29.55 68.60 2.03 46.47 16 22 H -0.26 -11.37 7.11 99.48 0.71 -10.66 16 23 H -0.30 -14.16 7.11 99.48 0.71 -13.46 16 24 H -0.30 -14.58 7.11 99.48 0.71 -13.88 16 25 C -0.13 -3.80 4.70 30.66 0.14 -3.65 16 26 C 0.12 3.50 6.08 86.35 0.53 4.02 16 27 C -0.15 -3.17 5.13 30.69 0.16 -3.01 16 28 C 0.06 1.28 6.84 72.02 0.49 1.77 16 29 O -0.39 -8.09 9.95 -148.98 -1.48 -9.57 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.05 0.78 7.82 -2.39 -0.02 0.76 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 36 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.11 1.91 7.94 -2.39 -0.02 1.89 16 38 H 0.11 1.85 7.69 -2.39 -0.02 1.84 16 39 H 0.08 2.67 7.00 -2.39 -0.02 2.66 16 40 H 0.05 1.83 6.94 -2.39 -0.02 1.81 16 41 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 42 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 43 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 45 H 0.04 1.49 7.27 -2.39 -0.02 1.47 16 46 H 0.37 18.57 6.46 -92.71 -0.60 17.97 16 47 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 48 H 0.07 2.12 7.31 -2.38 -0.02 2.10 16 49 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 50 H 0.10 2.26 5.93 -2.39 -0.01 2.25 16 51 H 0.05 1.94 7.74 -2.39 -0.02 1.92 16 52 H 0.07 1.37 8.14 -2.39 -0.02 1.36 16 53 H 0.07 1.87 6.05 -2.39 -0.01 1.86 16 54 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 55 H 0.10 1.73 8.14 -2.39 -0.02 1.71 16 Total: -1.00 -63.56 410.57 3.00 -60.56 By element: Atomic # 1 Polarization: 36.43 SS G_CDS: 0.25 Total: 36.68 kcal Atomic # 6 Polarization: -8.21 SS G_CDS: 5.65 Total: -2.56 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -3.40 Total: -111.34 kcal Atomic # 8 Polarization: -28.29 SS G_CDS: -1.52 Total: -29.81 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.47 kcal Total: -63.56 3.00 -60.56 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755134472.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.273 kcal (2) G-P(sol) polarization free energy of solvation -63.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds