Wall clock time and date at job start Tue Mar 31 2020 22:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47159 * 2 1 4 4 H 1.08997 * 109.48679 * 305.02474 * 3 2 1 5 5 C 1.53093 * 109.47956 * 184.99940 * 3 2 1 6 6 C 1.53179 * 109.16184 * 297.62231 * 5 3 2 7 7 H 1.09002 * 109.54198 * 62.89077 * 6 5 3 8 8 C 1.53003 * 109.54046 * 183.06569 * 6 5 3 9 9 C 1.50705 * 109.46936 * 184.82206 * 8 6 5 10 10 O 1.21281 * 119.99793 * 0.02562 * 9 8 6 11 11 N 1.34775 * 119.99869 * 180.02562 * 9 8 6 12 12 C 1.46924 * 120.63114 * 359.72132 * 11 9 8 13 13 C 1.53622 * 108.54206 * 126.36914 * 12 11 9 14 14 C 1.53043 * 109.24232 * 54.85619 * 13 12 11 15 15 C 1.53000 * 109.44740 * 178.49513 * 14 13 12 16 16 N 1.46496 * 109.45792 * 58.53303 * 14 13 12 17 17 C 1.36942 * 120.00430 * 59.93321 * 16 14 13 18 18 H 1.07999 * 119.99774 * 359.97438 * 17 16 14 19 19 C 1.38814 * 120.00308 * 180.02562 * 17 16 14 20 20 N 1.31622 * 119.99911 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99884 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47111 * 59.99944 * 21 19 17 23 23 H 1.48509 * 109.46759 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46981 * 299.99453 * 21 19 17 25 25 C 1.53035 * 109.53729 * 298.50943 * 14 13 12 26 26 C 1.46923 * 120.62882 * 180.02562 * 11 9 8 27 27 C 1.53174 * 109.03941 * 303.02234 * 6 5 3 28 28 C 1.53095 * 109.16381 * 56.98191 * 27 6 5 29 29 O 1.42902 * 109.47899 * 65.05338 * 3 2 1 30 30 H 1.09005 * 109.46929 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47387 * 299.99805 * 1 2 3 32 32 H 1.09003 * 109.46934 * 60.00440 * 1 2 3 33 33 H 1.08996 * 109.47762 * 239.99894 * 2 1 3 34 34 H 1.09003 * 109.47393 * 119.99830 * 2 1 3 35 35 H 1.09003 * 109.51855 * 177.72148 * 5 3 2 36 36 H 1.08994 * 109.58000 * 57.56255 * 5 3 2 37 37 H 1.08997 * 109.47213 * 304.82258 * 8 6 5 38 38 H 1.09002 * 109.47052 * 64.82873 * 8 6 5 39 39 H 1.08999 * 109.59061 * 246.20390 * 12 11 9 40 40 H 1.09002 * 109.58909 * 6.62829 * 12 11 9 41 41 H 1.08998 * 109.63541 * 294.86557 * 13 12 11 42 42 H 1.08998 * 109.43429 * 174.72474 * 13 12 11 43 43 H 1.09000 * 109.46770 * 180.02562 * 15 14 13 44 44 H 1.08995 * 109.47780 * 300.06321 * 15 14 13 45 45 H 1.09000 * 109.47244 * 60.06366 * 15 14 13 46 46 H 0.97004 * 120.00061 * 239.92813 * 16 14 13 47 47 H 0.96998 * 120.00226 * 180.02562 * 20 19 17 48 48 H 1.08998 * 109.50052 * 301.41385 * 25 14 13 49 49 H 1.08999 * 109.52346 * 181.32598 * 25 14 13 50 50 H 1.09002 * 109.58968 * 353.37142 * 26 11 9 51 51 H 1.09003 * 109.58887 * 113.65746 * 26 11 9 52 52 H 1.09004 * 109.52433 * 176.88694 * 27 6 5 53 53 H 1.08999 * 109.52728 * 297.07629 * 27 6 5 54 54 H 1.08998 * 109.48473 * 182.41141 * 28 27 6 55 55 H 1.08998 * 109.49081 * 62.38034 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6052 1.9819 -0.8415 5 6 3.5657 1.4446 -0.1258 6 6 4.1714 0.7375 1.0906 7 1 3.8504 -0.3041 1.1041 8 6 5.6981 0.8015 1.0120 9 6 6.2932 0.0049 2.1445 10 8 5.5677 -0.5588 2.9361 11 7 7.6316 -0.0809 2.2775 12 6 8.5234 0.5915 1.3229 13 6 9.5011 1.4781 2.1090 14 6 10.2263 0.6264 3.1534 15 6 11.2286 1.4970 3.9140 16 7 10.9377 -0.4655 2.4842 17 6 11.9039 -0.1853 1.5551 18 1 12.1413 0.8406 1.3155 19 6 12.5776 -1.2200 0.9206 20 7 12.2879 -2.4704 1.2123 21 14 13.8951 -0.8377 -0.3472 22 1 14.9762 -0.0415 0.2871 23 1 14.4590 -2.1069 -0.8731 24 1 13.2977 -0.0611 -1.4631 25 6 9.2077 0.0446 4.1362 26 6 8.2266 -0.8542 3.3760 27 6 3.6923 1.4379 2.3657 28 6 2.1616 1.4361 2.3952 29 8 1.6631 2.0812 1.2215 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5138 -0.8899 34 1 1.8933 -0.5138 0.8900 35 1 3.9264 2.4724 -0.1666 36 1 3.8580 0.9197 -1.0352 37 1 6.0308 0.3854 0.0611 38 1 6.0226 1.8393 1.0880 39 1 9.0787 -0.1542 0.7540 40 1 7.9341 1.2078 0.6440 41 1 8.9516 2.2761 2.6083 42 1 10.2295 1.9112 1.4234 43 1 11.7456 0.8906 4.6576 44 1 11.9542 1.9116 3.2142 45 1 10.6995 2.3092 4.4124 46 1 10.7243 -1.3870 2.6992 47 1 12.7589 -3.1934 0.7692 48 1 8.6609 0.8560 4.6164 49 1 9.7267 -0.5427 4.8937 50 1 7.4413 -1.1921 4.0523 51 1 8.7561 -1.7166 2.9710 52 1 4.0741 0.9076 3.2381 53 1 4.0555 2.4656 2.3753 54 1 1.8144 1.9710 3.2792 55 1 1.7997 0.4084 2.4267 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755134473.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:08:55 Heat of formation + Delta-G solvation = -106.934096 kcal Electronic energy + Delta-G solvation = -31484.482964 eV Core-core repulsion = 27520.028268 eV Total energy + Delta-G solvation = -3964.454696 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.56071 -40.63725 -39.18342 -36.01935 -35.56387 -34.31411 -34.16868 -32.24231 -31.11821 -30.84720 -29.99080 -28.71888 -25.90897 -25.24200 -24.43301 -24.21662 -23.87048 -22.75914 -20.77722 -20.02230 -19.44618 -18.95691 -18.12012 -17.32668 -16.92980 -16.83682 -16.69616 -16.26637 -15.86439 -15.61061 -15.45406 -15.36556 -15.02370 -14.88024 -14.47737 -14.35238 -14.08450 -14.01677 -13.69825 -13.66418 -13.39524 -13.17080 -12.92583 -12.80450 -12.77170 -12.66762 -12.58984 -12.54504 -12.44675 -12.19997 -12.12955 -12.04821 -11.88373 -11.79406 -11.65149 -11.48836 -11.44582 -11.07761 -10.97431 -10.81600 -10.56180 -10.24039 -9.53574 -8.87956 -7.84581 -5.10246 1.50554 1.51704 1.57088 1.70021 2.11595 2.62036 2.99082 3.49467 3.52468 3.73016 3.80106 3.85884 3.87757 3.99719 4.03018 4.08075 4.20546 4.21886 4.29810 4.32847 4.41974 4.42906 4.46005 4.51750 4.63655 4.66206 4.69524 4.71122 4.80679 4.81734 4.88676 4.90644 4.91552 4.95464 5.03560 5.04788 5.05982 5.12071 5.12796 5.16203 5.19607 5.28195 5.36731 5.38371 5.39387 5.41352 5.49289 5.59009 5.66906 5.72926 6.36293 6.37180 6.57154 7.24903 7.44318 8.21157 8.44241 9.39045 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018172 B = 0.002558 C = 0.002420 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.481349 B =10944.072089 C =11565.981803 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.159 4.159 3 C 0.088 3.912 4 H 0.114 0.886 5 C -0.140 4.140 6 C -0.068 4.068 7 H 0.064 0.936 8 C -0.129 4.129 9 C 0.508 3.492 10 O -0.582 6.582 11 N -0.602 5.602 12 C 0.121 3.879 13 C -0.128 4.128 14 C 0.187 3.813 15 C -0.144 4.144 16 N -0.724 5.724 17 C -0.209 4.209 18 H 0.078 0.922 19 C -0.078 4.078 20 N -0.972 5.972 21 Si 0.958 3.042 22 H -0.284 1.284 23 H -0.306 1.306 24 H -0.277 1.277 25 C -0.118 4.118 26 C 0.120 3.880 27 C -0.149 4.149 28 C 0.061 3.939 29 O -0.389 6.389 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.107 0.893 38 H 0.112 0.888 39 H 0.052 0.948 40 H 0.104 0.896 41 H 0.075 0.925 42 H 0.066 0.934 43 H 0.038 0.962 44 H 0.042 0.958 45 H 0.066 0.934 46 H 0.370 0.630 47 H 0.245 0.755 48 H 0.082 0.918 49 H 0.070 0.930 50 H 0.080 0.920 51 H 0.047 0.953 52 H 0.070 0.930 53 H 0.067 0.933 54 H 0.097 0.903 55 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.996 10.957 -1.357 22.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.197 4.197 3 C 0.031 3.969 4 H 0.131 0.869 5 C -0.178 4.178 6 C -0.087 4.087 7 H 0.082 0.918 8 C -0.169 4.169 9 C 0.298 3.702 10 O -0.463 6.463 11 N -0.333 5.333 12 C -0.002 4.002 13 C -0.168 4.168 14 C 0.097 3.903 15 C -0.204 4.204 16 N -0.364 5.364 17 C -0.341 4.341 18 H 0.096 0.904 19 C -0.269 4.269 20 N -0.624 5.624 21 Si 0.789 3.211 22 H -0.211 1.211 23 H -0.233 1.233 24 H -0.203 1.203 25 C -0.156 4.156 26 C -0.003 4.003 27 C -0.187 4.187 28 C -0.016 4.016 29 O -0.309 6.309 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.076 0.924 35 H 0.097 0.903 36 H 0.106 0.894 37 H 0.125 0.875 38 H 0.130 0.870 39 H 0.070 0.930 40 H 0.122 0.878 41 H 0.094 0.906 42 H 0.085 0.915 43 H 0.057 0.943 44 H 0.061 0.939 45 H 0.085 0.915 46 H 0.203 0.797 47 H 0.054 0.946 48 H 0.100 0.900 49 H 0.088 0.912 50 H 0.098 0.902 51 H 0.065 0.935 52 H 0.088 0.912 53 H 0.086 0.914 54 H 0.115 0.885 55 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -20.358 10.935 -1.049 23.133 hybrid contribution 1.548 -1.131 -0.440 1.967 sum -18.810 9.804 -1.490 21.264 Atomic orbital electron populations 1.21680 0.94905 1.01628 1.02101 1.22198 0.97217 0.97335 1.02909 1.22344 0.93871 0.93384 0.87325 0.86875 1.22250 0.95574 1.01955 0.98018 1.20900 0.92590 0.99869 0.95370 0.91801 1.21801 0.96301 1.01680 0.97096 1.21248 0.81313 0.80833 0.86763 1.90600 1.60057 1.49199 1.46450 1.48195 1.05656 1.50589 1.28898 1.21756 0.91621 0.95847 0.90948 1.22294 0.97949 0.97669 0.98933 1.19860 0.90629 0.88579 0.91218 1.22141 0.99376 0.99275 0.99561 1.42678 1.43004 1.03839 1.46878 1.19387 1.10170 0.92261 1.12282 0.90423 1.25356 1.02978 0.95324 1.03271 1.69799 1.46446 0.98404 1.47766 0.85430 0.79957 0.75802 0.79910 1.21088 1.23297 1.20329 1.21989 0.96318 0.99761 0.97571 1.21364 0.95979 0.93852 0.89119 1.22251 0.96618 1.00866 0.98924 1.22555 0.92999 0.97820 0.88213 1.87939 1.74955 1.53677 1.14289 0.92577 0.93231 0.91900 0.90113 0.92359 0.90275 0.89386 0.87527 0.87007 0.92961 0.87755 0.90595 0.91502 0.94326 0.93896 0.91463 0.79729 0.94626 0.89969 0.91173 0.90194 0.93489 0.91173 0.91429 0.88496 0.93276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.81 71.98 0.71 -1.39 16 2 C -0.16 -2.47 4.74 30.59 0.15 -2.33 16 3 C 0.09 1.39 3.29 30.63 0.10 1.49 16 4 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 5 C -0.14 -2.11 4.93 30.69 0.15 -1.96 16 6 C -0.07 -1.35 1.61 -10.67 -0.02 -1.36 16 7 H 0.06 1.49 6.55 -2.39 -0.02 1.47 16 8 C -0.13 -2.61 3.53 29.85 0.11 -2.51 16 9 C 0.51 14.62 7.44 87.66 0.65 15.27 16 10 O -0.58 -20.11 13.41 -3.03 -0.04 -20.15 16 11 N -0.60 -18.22 2.97 -817.99 -2.43 -20.65 16 12 C 0.12 3.52 6.11 86.51 0.53 4.05 16 13 C -0.13 -3.80 4.72 30.82 0.15 -3.66 16 14 C 0.19 6.41 0.74 3.63 0.00 6.42 16 15 C -0.14 -4.68 8.44 71.98 0.61 -4.07 16 16 N -0.72 -32.44 4.13 -303.23 -1.25 -33.69 16 17 C -0.21 -10.42 8.68 84.03 0.73 -9.70 16 18 H 0.08 3.71 6.70 -2.91 -0.02 3.69 16 19 C -0.08 -4.21 5.50 84.86 0.47 -3.75 16 20 N -0.97 -57.44 13.06 21.65 0.28 -57.15 16 21 Si 0.96 44.40 29.55 68.60 2.03 46.43 16 22 H -0.28 -12.85 7.11 99.48 0.71 -12.15 16 23 H -0.31 -14.75 7.11 99.48 0.71 -14.04 16 24 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 25 C -0.12 -3.63 4.96 30.68 0.15 -3.48 16 26 C 0.12 3.99 6.15 86.38 0.53 4.52 16 27 C -0.15 -3.14 5.13 30.68 0.16 -2.98 16 28 C 0.06 1.18 6.52 72.01 0.47 1.65 16 29 O -0.39 -7.79 10.13 -148.98 -1.51 -9.30 16 30 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 31 H 0.05 0.80 7.82 -2.39 -0.02 0.78 16 32 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.06 1.09 4.98 -2.39 -0.01 1.08 16 35 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.11 1.90 7.93 -2.39 -0.02 1.88 16 38 H 0.11 1.85 7.70 -2.39 -0.02 1.83 16 39 H 0.05 1.95 7.74 -2.39 -0.02 1.93 16 40 H 0.10 2.28 5.93 -2.39 -0.01 2.26 16 41 H 0.08 1.87 8.14 -2.39 -0.02 1.86 16 42 H 0.07 2.11 7.31 -2.39 -0.02 2.09 16 43 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.04 1.49 7.27 -2.39 -0.02 1.47 16 45 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 46 H 0.37 18.61 6.47 -92.71 -0.60 18.01 16 47 H 0.24 14.38 8.31 -92.71 -0.77 13.61 16 48 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 50 H 0.08 2.67 7.01 -2.39 -0.02 2.65 16 51 H 0.05 1.82 6.95 -2.39 -0.02 1.81 16 52 H 0.07 1.83 6.06 -2.39 -0.01 1.81 16 53 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 54 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 55 H 0.05 0.99 6.23 -2.39 -0.01 0.97 16 Total: -1.00 -63.20 403.66 2.98 -60.22 By element: Atomic # 1 Polarization: 37.80 SS G_CDS: 0.26 Total: 38.07 kcal Atomic # 6 Polarization: -9.40 SS G_CDS: 5.63 Total: -3.77 kcal Atomic # 7 Polarization: -108.10 SS G_CDS: -3.39 Total: -111.49 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -1.55 Total: -29.45 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -63.20 2.98 -60.22 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755134473.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.714 kcal (2) G-P(sol) polarization free energy of solvation -63.201 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.220 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds