Wall clock time and date at job start Wed Apr 1 2020 00:00:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46768 * 2 1 4 4 H 1.08997 * 109.47409 * 304.98084 * 3 2 1 5 5 O 1.42897 * 109.46914 * 64.98771 * 3 2 1 6 6 C 1.42907 * 113.99785 * 269.99646 * 5 3 2 7 7 C 1.54272 * 110.02751 * 267.90907 * 6 5 3 8 8 C 1.54969 * 104.15516 * 217.13486 * 7 6 5 9 9 C 1.54889 * 102.77818 * 37.88821 * 8 7 6 10 10 C 1.53865 * 110.03336 * 150.69069 * 6 5 3 11 11 C 1.50701 * 109.46828 * 184.98120 * 3 2 1 12 12 O 1.21281 * 120.00083 * 248.36311 * 11 3 2 13 13 N 1.34774 * 119.99831 * 68.63894 * 11 3 2 14 14 C 1.47420 * 125.64936 * 4.11777 * 13 11 3 15 15 C 1.54695 * 104.94359 * 204.07332 * 14 13 11 16 16 C 1.55158 * 101.67354 * 323.27816 * 15 14 13 17 17 C 1.47030 * 125.64765 * 184.42674 * 13 11 3 18 18 H 1.09004 * 109.87849 * 59.48994 * 17 13 11 19 19 C 1.52999 * 109.88238 * 298.47551 * 17 13 11 20 20 N 1.46505 * 109.47160 * 176.30040 * 19 17 13 21 21 C 1.46501 * 120.00090 * 275.45742 * 20 19 17 22 22 C 1.36931 * 119.99684 * 95.45053 * 20 19 17 23 23 H 1.08001 * 120.00249 * 2.85336 * 22 20 19 24 24 C 1.38810 * 119.99886 * 182.84092 * 22 20 19 25 25 N 1.31624 * 119.99969 * 6.32727 * 24 22 20 26 26 Si 1.86803 * 119.99991 * 186.32052 * 24 22 20 27 27 H 1.48502 * 109.47060 * 90.00520 * 26 24 22 28 28 H 1.48506 * 109.47246 * 210.00088 * 26 24 22 29 29 H 1.48492 * 109.47210 * 330.00677 * 26 24 22 30 30 H 1.09000 * 109.47085 * 299.99605 * 1 2 3 31 31 H 1.08996 * 109.47414 * 59.99575 * 1 2 3 32 32 H 1.09004 * 109.47070 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47085 * 240.00395 * 2 1 3 34 34 H 1.08996 * 109.47414 * 120.00425 * 2 1 3 35 35 H 1.09000 * 110.01596 * 29.29418 * 6 5 3 36 36 H 1.08998 * 110.49129 * 335.77956 * 7 6 5 37 37 H 1.08995 * 110.48346 * 98.43107 * 7 6 5 38 38 H 1.09003 * 110.71922 * 279.57320 * 8 7 6 39 39 H 1.08997 * 110.76308 * 156.22554 * 8 7 6 40 40 H 1.09003 * 110.48443 * 203.39973 * 9 8 7 41 41 H 1.08996 * 110.47986 * 80.76164 * 9 8 7 42 42 H 1.09000 * 110.03688 * 238.56588 * 10 6 5 43 43 H 1.09004 * 110.03597 * 0.02562 * 10 6 5 44 44 H 1.08997 * 110.37126 * 323.00928 * 14 13 11 45 45 H 1.09009 * 110.36269 * 85.33210 * 14 13 11 46 46 H 1.09002 * 111.10371 * 205.11288 * 15 14 13 47 47 H 1.08992 * 110.84972 * 81.33577 * 15 14 13 48 48 H 1.09003 * 110.72162 * 276.96679 * 16 15 14 49 49 H 1.09005 * 110.86926 * 153.77281 * 16 15 14 50 50 H 1.08998 * 109.47442 * 296.30728 * 19 17 13 51 51 H 1.09000 * 109.46768 * 56.30537 * 19 17 13 52 52 H 1.08999 * 109.46856 * 357.37361 * 21 20 19 53 53 H 1.09005 * 109.47127 * 117.37539 * 21 20 19 54 54 H 1.09001 * 109.46986 * 237.37369 * 21 20 19 55 55 H 0.97003 * 119.99496 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6056 1.9815 -0.8420 5 8 1.6616 2.0814 1.2209 6 6 0.3923 2.7357 1.1655 7 6 0.5762 4.2121 0.7579 8 6 -0.4822 4.9717 1.5971 9 6 -0.4484 4.2211 2.9516 10 6 -0.2592 2.7412 2.5594 11 6 3.5419 1.4443 -0.1234 12 8 4.2266 1.8039 0.8108 13 7 4.1240 1.0516 -1.2738 14 6 3.4155 0.6796 -2.5119 15 6 4.3974 -0.2433 -3.2715 16 6 5.7635 0.4168 -2.9468 17 6 5.5705 0.9172 -1.4998 18 1 5.9897 0.1952 -0.7989 19 6 6.2537 2.2742 -1.3196 20 7 7.7032 2.1137 -1.4595 21 6 8.5092 1.7020 -0.3075 22 6 8.3045 2.3484 -2.6671 23 1 7.7174 2.6962 -3.5042 24 6 9.6688 2.1395 -2.8153 25 7 10.3621 1.5989 -1.8357 26 14 10.5208 2.6254 -4.4051 27 1 10.9987 4.0277 -4.3020 28 1 11.6774 1.7246 -4.6423 29 1 9.5639 2.5104 -5.5348 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 -0.2575 2.2295 0.4516 36 1 1.5799 4.5551 1.0092 37 1 0.3836 4.3407 -0.3072 38 1 -1.4673 4.8942 1.1370 39 1 -0.1963 6.0155 1.7266 40 1 -1.3884 4.3570 3.4865 41 1 0.3896 4.5654 3.5576 42 1 -1.2256 2.2384 2.5220 43 1 0.3929 2.2453 3.2784 44 1 2.4958 0.1440 -2.2764 45 1 3.1970 1.5676 -3.1053 46 1 4.2010 -0.2278 -4.3435 47 1 4.3530 -1.2606 -2.8829 48 1 5.9586 1.2511 -3.6206 49 1 6.5701 -0.3147 -2.9976 50 1 5.8900 2.9677 -2.0778 51 1 6.0257 2.6670 -0.3287 52 1 7.8685 1.6084 0.5693 53 1 8.9798 0.7415 -0.5180 54 1 9.2790 2.4498 -0.1169 55 1 11.3153 1.4526 -1.9395 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755199093.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:00:36 Heat of formation + Delta-G solvation = -75.033217 kcal Electronic energy + Delta-G solvation = -31619.827969 eV Core-core repulsion = 27656.756599 eV Total energy + Delta-G solvation = -3963.071370 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.54635 -40.09812 -38.62252 -37.22181 -37.08816 -34.28103 -33.39165 -32.43960 -30.69100 -29.73835 -29.29968 -28.07649 -27.38384 -26.77864 -24.31319 -23.01673 -22.74313 -21.72870 -21.58954 -21.28572 -20.09310 -18.90887 -18.29944 -17.93781 -17.46786 -16.78489 -16.53650 -16.35432 -15.93200 -15.67240 -15.43047 -15.18406 -14.98148 -14.77627 -14.53214 -14.27873 -14.26320 -13.89735 -13.72013 -13.44618 -13.42054 -13.13651 -12.99686 -12.93003 -12.84043 -12.71124 -12.64883 -12.32336 -12.23704 -12.09446 -12.03575 -12.02039 -11.92859 -11.88734 -11.76330 -11.55860 -11.49421 -11.47230 -11.30258 -10.77828 -10.67261 -10.30076 -9.75904 -8.91577 -7.71816 -5.18595 1.47092 1.49550 1.56748 1.57969 1.72170 2.52140 2.85138 3.35784 3.41640 3.63355 3.64303 3.67697 3.81237 3.82623 3.86708 3.96200 4.01449 4.07022 4.23681 4.29749 4.35679 4.47189 4.48082 4.50729 4.52553 4.57024 4.63972 4.73368 4.74382 4.76930 4.86047 4.88215 4.93371 4.95612 5.01693 5.07936 5.10562 5.10696 5.12535 5.17094 5.19662 5.22148 5.29559 5.37520 5.41597 5.45565 5.45615 5.46745 5.61256 5.76711 6.25134 6.28646 6.59891 7.14876 7.18476 7.85645 8.29688 9.27149 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016681 B = 0.002771 C = 0.002582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.158553 B =10100.645651 C =10840.697246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.140 4.140 3 C 0.088 3.912 4 H 0.108 0.892 5 O -0.379 6.379 6 C 0.069 3.931 7 C -0.156 4.156 8 C -0.117 4.117 9 C -0.125 4.125 10 C -0.123 4.123 11 C 0.514 3.486 12 O -0.577 6.577 13 N -0.609 5.609 14 C 0.088 3.912 15 C -0.122 4.122 16 C -0.103 4.103 17 C 0.126 3.874 18 H 0.033 0.967 19 C 0.154 3.846 20 N -0.619 5.619 21 C 0.191 3.809 22 C -0.241 4.241 23 H 0.085 0.915 24 C -0.067 4.067 25 N -0.952 5.952 26 Si 0.976 3.024 27 H -0.292 1.292 28 H -0.297 1.297 29 H -0.261 1.261 30 H 0.060 0.940 31 H 0.077 0.923 32 H 0.074 0.926 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.099 0.901 36 H 0.045 0.955 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.067 0.933 40 H 0.087 0.913 41 H 0.050 0.950 42 H 0.096 0.904 43 H 0.057 0.943 44 H 0.111 0.889 45 H 0.085 0.915 46 H 0.112 0.888 47 H 0.080 0.920 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.049 0.951 51 H 0.026 0.974 52 H -0.001 1.001 53 H 0.028 0.972 54 H 0.008 0.992 55 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.105 -2.203 -0.937 30.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.178 4.178 3 C 0.027 3.973 4 H 0.126 0.874 5 O -0.298 6.298 6 C 0.012 3.988 7 C -0.194 4.194 8 C -0.154 4.154 9 C -0.162 4.162 10 C -0.160 4.160 11 C 0.303 3.697 12 O -0.455 6.455 13 N -0.344 5.344 14 C -0.033 4.033 15 C -0.159 4.159 16 C -0.142 4.142 17 C 0.020 3.980 18 H 0.052 0.948 19 C 0.027 3.973 20 N -0.343 5.343 21 C 0.046 3.954 22 C -0.370 4.370 23 H 0.103 0.897 24 C -0.260 4.260 25 N -0.601 5.601 26 Si 0.804 3.196 27 H -0.220 1.220 28 H -0.224 1.224 29 H -0.185 1.185 30 H 0.079 0.921 31 H 0.096 0.904 32 H 0.093 0.907 33 H 0.113 0.887 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.108 0.892 39 H 0.086 0.914 40 H 0.105 0.895 41 H 0.068 0.932 42 H 0.115 0.885 43 H 0.076 0.924 44 H 0.129 0.871 45 H 0.104 0.896 46 H 0.130 0.870 47 H 0.098 0.902 48 H 0.088 0.912 49 H 0.078 0.922 50 H 0.068 0.932 51 H 0.044 0.956 52 H 0.018 0.982 53 H 0.047 0.953 54 H 0.026 0.974 55 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -29.516 -2.010 -0.195 29.585 hybrid contribution 1.691 0.341 -0.258 1.744 sum -27.825 -1.669 -0.452 27.878 Atomic orbital electron populations 1.21935 0.92523 1.03618 1.02912 1.22086 0.98854 0.93333 1.03528 1.21937 0.89074 0.96566 0.89718 0.87431 1.88119 1.38012 1.71035 1.32602 1.23380 0.84092 0.92107 0.99182 1.23001 0.99558 0.95891 1.00955 1.22441 0.99089 0.98828 0.95074 1.22359 1.02060 0.94240 0.97569 1.22253 1.00781 0.97882 0.95087 1.20954 0.91214 0.76557 0.80980 1.90703 1.66353 1.48322 1.40152 1.48712 1.07217 1.66128 1.12324 1.22798 0.96682 0.99782 0.84042 1.22795 0.92263 0.98682 1.02185 1.22365 0.98235 1.00444 0.93110 1.22191 0.79884 0.98145 0.97816 0.94847 1.21043 0.83090 0.94828 0.98359 1.44184 1.01714 1.80056 1.08391 1.20635 0.90948 0.98357 0.85430 1.19647 0.91654 1.36422 0.89263 0.89698 1.25702 0.97553 1.01504 1.01197 1.70433 1.06615 1.49907 1.33183 0.85117 0.78076 0.76827 0.79556 1.21974 1.22401 1.18549 0.92129 0.90416 0.90709 0.88657 0.92641 0.88292 0.93656 0.90219 0.89211 0.91401 0.89487 0.93155 0.88505 0.92378 0.87134 0.89648 0.86993 0.90160 0.91201 0.92249 0.93242 0.95600 0.98203 0.95335 0.97356 0.94713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 8.58 71.98 0.62 -1.00 16 2 C -0.14 -2.43 5.42 30.59 0.17 -2.26 16 3 C 0.09 2.06 2.01 29.85 0.06 2.12 16 4 H 0.11 1.87 7.67 -2.39 -0.02 1.85 16 5 O -0.38 -10.32 9.02 -130.08 -1.17 -11.50 16 6 C 0.07 1.26 2.08 31.32 0.07 1.32 16 7 C -0.16 -2.90 6.57 31.70 0.21 -2.69 16 8 C -0.12 -1.63 6.91 31.91 0.22 -1.40 16 9 C -0.12 -1.86 6.83 31.67 0.22 -1.64 16 10 C -0.12 -1.98 6.47 31.32 0.20 -1.78 16 11 C 0.51 17.55 7.01 87.66 0.61 18.16 16 12 O -0.58 -26.66 15.33 15.87 0.24 -26.41 16 13 N -0.61 -18.69 3.07 -788.47 -2.42 -21.10 16 14 C 0.09 1.67 6.46 86.78 0.56 2.23 16 15 C -0.12 -2.45 7.07 31.91 0.23 -2.23 16 16 C -0.10 -3.39 5.74 31.78 0.18 -3.21 16 17 C 0.13 4.88 3.14 45.34 0.14 5.03 16 18 H 0.03 1.52 8.14 -2.38 -0.02 1.50 16 19 C 0.15 7.19 5.06 86.38 0.44 7.63 16 20 N -0.62 -33.66 2.81 -726.93 -2.05 -35.71 16 21 C 0.19 10.92 9.00 127.77 1.15 12.07 16 22 C -0.24 -13.33 8.83 84.03 0.74 -12.59 16 23 H 0.09 4.41 7.43 -2.91 -0.02 4.38 16 24 C -0.07 -3.84 5.43 84.86 0.46 -3.38 16 25 N -0.95 -58.23 9.50 21.65 0.21 -58.03 16 26 Si 0.98 45.68 29.56 68.60 2.03 47.71 16 27 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 28 H -0.30 -14.08 7.11 99.48 0.71 -13.37 16 29 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 30 H 0.06 0.71 5.81 -2.39 -0.01 0.69 16 31 H 0.08 0.51 8.01 -2.39 -0.02 0.49 16 32 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 33 H 0.10 1.34 5.52 -2.39 -0.01 1.33 16 34 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 35 H 0.10 1.23 5.31 -2.39 -0.01 1.22 16 36 H 0.04 1.16 8.08 -2.39 -0.02 1.14 16 37 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 38 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.06 1.20 7.96 -2.39 -0.02 1.18 16 44 H 0.11 1.34 5.20 -2.39 -0.01 1.33 16 45 H 0.09 1.39 8.14 -2.38 -0.02 1.38 16 46 H 0.11 1.63 8.14 -2.39 -0.02 1.61 16 47 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 48 H 0.07 2.43 7.06 -2.39 -0.02 2.42 16 49 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 50 H 0.05 2.21 7.88 -2.39 -0.02 2.19 16 51 H 0.03 1.33 6.46 -2.39 -0.02 1.31 16 52 H 0.00 -0.03 7.85 -2.39 -0.02 -0.05 16 53 H 0.03 1.72 6.84 -2.38 -0.02 1.71 16 54 H 0.01 0.49 7.26 -2.39 -0.02 0.47 16 55 H 0.24 14.50 8.31 -92.71 -0.77 13.73 16 Total: -1.00 -78.36 411.73 3.96 -74.40 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: 0.84 Total: 14.25 kcal Atomic # 6 Polarization: 10.12 SS G_CDS: 6.27 Total: 16.40 kcal Atomic # 7 Polarization: -110.58 SS G_CDS: -4.26 Total: -114.84 kcal Atomic # 8 Polarization: -36.98 SS G_CDS: -0.93 Total: -37.91 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -78.36 3.96 -74.40 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755199093.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.630 kcal (2) G-P(sol) polarization free energy of solvation -78.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds