Wall clock time and date at job start Tue Mar 31 2020 22:46:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52993 * 109.47306 * 2 1 4 4 H 1.09007 * 109.47193 * 304.76917 * 3 2 1 5 5 C 1.53004 * 109.47453 * 184.77170 * 3 2 1 6 6 C 1.52999 * 109.47288 * 64.99379 * 5 3 2 7 7 C 1.53010 * 109.46692 * 65.00336 * 6 5 3 8 8 C 1.52993 * 109.47437 * 185.00216 * 6 5 3 9 9 C 1.50706 * 109.47379 * 64.76823 * 3 2 1 10 10 O 1.21276 * 119.99574 * 26.50951 * 9 3 2 11 11 N 1.34774 * 119.99887 * 206.50868 * 9 3 2 12 12 C 1.47485 * 125.66804 * 5.15495 * 11 9 3 13 13 C 1.55021 * 104.89700 * 155.94201 * 12 11 9 14 14 C 1.54517 * 101.53037 * 36.37889 * 13 12 11 15 15 C 1.47189 * 125.66127 * 185.11005 * 11 9 3 16 16 C 1.52075 * 110.11540 * 207.08018 * 14 13 12 17 17 N 1.47292 * 108.69583 * 187.41435 * 16 14 13 18 18 C 1.36937 * 121.05882 * 229.26919 * 17 16 14 19 19 H 1.08004 * 120.00038 * 149.95438 * 18 17 16 20 20 C 1.38809 * 120.00018 * 329.94988 * 18 17 16 21 21 N 1.31625 * 120.00142 * 349.45106 * 20 18 17 22 22 Si 1.86806 * 120.00226 * 169.44766 * 20 18 17 23 23 H 1.48497 * 109.47117 * 180.02562 * 22 20 18 24 24 H 1.48501 * 109.46779 * 300.00119 * 22 20 18 25 25 H 1.48495 * 109.46884 * 60.00131 * 22 20 18 26 26 C 1.47164 * 117.88537 * 48.99894 * 17 16 14 27 27 C 1.53294 * 108.49628 * 309.07557 * 26 17 16 28 28 O 1.42058 * 110.34030 * 83.93136 * 14 13 12 29 29 H 1.09003 * 109.46883 * 304.75965 * 1 2 3 30 30 H 1.08995 * 109.47005 * 64.75867 * 1 2 3 31 31 H 1.08999 * 109.47067 * 184.75946 * 1 2 3 32 32 H 1.09001 * 109.47210 * 239.99549 * 2 1 3 33 33 H 1.09008 * 109.47043 * 119.99921 * 2 1 3 34 34 H 1.08998 * 109.47372 * 184.99784 * 5 3 2 35 35 H 1.09008 * 109.46652 * 305.00036 * 5 3 2 36 36 H 1.09001 * 109.47219 * 305.00590 * 6 5 3 37 37 H 1.09000 * 109.46854 * 180.02562 * 7 6 5 38 38 H 1.09002 * 109.46726 * 300.00167 * 7 6 5 39 39 H 1.09001 * 109.47081 * 60.00169 * 7 6 5 40 40 H 1.09005 * 109.47088 * 60.00358 * 8 6 5 41 41 H 1.09004 * 109.47453 * 180.02562 * 8 6 5 42 42 H 1.09001 * 109.47222 * 300.00373 * 8 6 5 43 43 H 1.08998 * 110.35248 * 37.08785 * 12 11 9 44 44 H 1.08993 * 110.44486 * 274.84791 * 12 11 9 45 45 H 1.08991 * 111.01482 * 278.31077 * 13 12 11 46 46 H 1.09004 * 111.04446 * 154.45007 * 13 12 11 47 47 H 1.09001 * 109.90643 * 62.17556 * 15 11 9 48 48 H 1.09004 * 109.91010 * 300.91794 * 15 11 9 49 49 H 1.09003 * 109.57434 * 67.62245 * 16 14 13 50 50 H 1.08990 * 109.46696 * 307.14640 * 16 14 13 51 51 H 0.96990 * 120.00247 * 180.02562 * 21 20 18 52 52 H 1.08996 * 109.63199 * 68.77863 * 26 17 16 53 53 H 1.09000 * 109.63552 * 189.38027 * 26 17 16 54 54 H 1.09002 * 109.51265 * 172.89588 * 27 26 17 55 55 H 1.08993 * 109.51386 * 293.05797 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6086 1.9804 -0.8442 5 6 3.5654 1.4441 -0.1200 6 6 3.9707 0.8714 -1.4796 7 6 3.4762 1.7990 -2.5916 8 6 5.4946 0.7570 -1.5511 9 6 1.6365 2.1180 1.2853 10 8 1.4526 1.4575 2.2856 11 7 1.4800 3.4561 1.3229 12 6 1.5654 4.3648 0.1644 13 6 0.7369 5.6099 0.5726 14 6 1.0624 5.7171 2.0793 15 6 1.1945 4.2531 2.5269 16 6 -0.0830 6.3950 2.8149 17 7 0.3304 6.6422 4.2068 18 6 -0.4718 6.2821 5.2566 19 1 -0.0311 6.0067 6.2034 20 6 -1.8514 6.2712 5.1040 21 7 -2.3990 6.8003 4.0303 22 14 -2.9311 5.5055 6.4222 23 1 -4.3567 5.6207 6.0230 24 1 -2.5764 4.0723 6.5816 25 1 -2.7182 6.2143 7.7096 26 6 1.6356 7.2829 4.4337 27 6 2.6984 6.5169 3.6378 28 8 2.2833 6.4174 2.2721 29 1 -0.3633 0.5859 0.8443 30 1 -0.3633 0.4382 -0.9295 31 1 -0.3633 -1.0241 0.0853 32 1 1.8934 -0.5139 -0.8899 33 1 1.8934 -0.5139 0.8901 34 1 3.9357 2.4654 -0.0309 35 1 3.9929 0.8319 0.6741 36 1 3.5259 -0.1157 -1.6053 37 1 3.7645 1.3907 -3.5602 38 1 2.3904 1.8805 -2.5406 39 1 3.9210 2.7861 -2.4659 40 1 5.8469 0.0962 -0.7590 41 1 5.7834 0.3494 -2.5200 42 1 5.9394 1.7441 -1.4254 43 1 1.1331 3.8947 -0.7188 44 1 2.6017 4.6443 -0.0246 45 1 -0.3280 5.4400 0.4139 46 1 1.0732 6.4970 0.0360 47 1 2.0135 4.1553 3.2396 48 1 0.2619 3.9183 2.9813 49 1 -0.9593 5.7469 2.8027 50 1 -0.3171 7.3419 2.3286 51 1 -3.3630 6.7930 3.9238 52 1 1.5994 8.3181 4.0943 53 1 1.8797 7.2509 5.4956 54 1 3.6479 7.0494 3.6917 55 1 2.8163 5.5173 4.0561 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755403032.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:46:44 Heat of formation + Delta-G solvation = -92.306888 kcal Electronic energy + Delta-G solvation = -32260.336005 eV Core-core repulsion = 28296.515592 eV Total energy + Delta-G solvation = -3963.820413 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.78068 -40.47895 -38.03690 -37.49571 -36.28943 -34.54643 -33.35221 -33.06380 -30.53229 -30.41167 -29.22521 -27.92683 -27.64045 -25.44820 -24.98323 -24.50845 -23.17699 -22.66670 -20.75316 -20.34323 -19.85707 -18.88888 -18.49204 -17.79240 -16.96179 -16.68742 -16.42676 -16.18068 -16.02438 -15.74463 -15.30026 -15.22999 -14.97748 -14.81078 -14.65716 -14.56467 -14.37251 -13.96593 -13.90245 -13.50664 -13.39142 -13.23488 -13.00426 -12.94421 -12.86918 -12.77943 -12.62988 -12.53670 -12.38639 -12.25668 -12.18834 -12.18283 -12.11750 -11.84457 -11.75730 -11.69670 -11.36632 -11.23403 -11.19421 -10.80293 -10.69122 -10.53163 -9.70442 -8.70626 -7.94426 -5.44874 1.40168 1.43411 1.48820 1.59647 1.94299 2.42231 2.74351 3.20276 3.32787 3.48449 3.61415 3.71893 3.77201 3.90050 4.02122 4.15652 4.15913 4.18791 4.25499 4.28352 4.35947 4.39009 4.45449 4.50801 4.57254 4.63192 4.70268 4.74309 4.76321 4.79082 4.81021 4.89378 4.90676 4.96368 5.01290 5.02183 5.08167 5.11904 5.13889 5.15749 5.18727 5.20351 5.23119 5.31964 5.36662 5.38641 5.49580 5.54123 5.56190 5.61187 6.27056 6.33667 6.54314 7.04772 7.14352 7.71216 8.25944 9.11067 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.014250 B = 0.003432 C = 0.003056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1964.467166 B = 8157.395082 C = 9158.832194 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.105 4.105 3 C -0.092 4.092 4 H 0.116 0.884 5 C -0.098 4.098 6 C -0.091 4.091 7 C -0.151 4.151 8 C -0.148 4.148 9 C 0.522 3.478 10 O -0.592 6.592 11 N -0.616 5.616 12 C 0.108 3.892 13 C -0.113 4.113 14 C 0.093 3.907 15 C 0.109 3.891 16 C 0.176 3.824 17 N -0.615 5.615 18 C -0.266 4.266 19 H 0.064 0.936 20 C -0.042 4.042 21 N -0.931 5.931 22 Si 0.963 3.037 23 H -0.289 1.289 24 H -0.286 1.286 25 H -0.272 1.272 26 C 0.106 3.894 27 C 0.050 3.950 28 O -0.370 6.370 29 H 0.020 0.980 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.053 0.947 36 H 0.081 0.919 37 H 0.064 0.936 38 H 0.061 0.939 39 H 0.057 0.943 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.053 0.947 43 H 0.109 0.891 44 H 0.090 0.910 45 H 0.087 0.913 46 H 0.113 0.887 47 H 0.050 0.950 48 H 0.037 0.963 49 H 0.061 0.939 50 H 0.011 0.989 51 H 0.252 0.748 52 H 0.026 0.974 53 H 0.068 0.932 54 H 0.125 0.875 55 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.378 -9.157 -17.310 23.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.143 4.143 3 C -0.113 4.113 4 H 0.134 0.866 5 C -0.136 4.136 6 C -0.109 4.109 7 C -0.208 4.208 8 C -0.205 4.205 9 C 0.313 3.687 10 O -0.473 6.473 11 N -0.349 5.349 12 C -0.014 4.014 13 C -0.151 4.151 14 C 0.051 3.949 15 C -0.014 4.014 16 C 0.050 3.950 17 N -0.340 5.340 18 C -0.396 4.396 19 H 0.082 0.918 20 C -0.238 4.238 21 N -0.576 5.576 22 Si 0.791 3.209 23 H -0.214 1.214 24 H -0.212 1.212 25 H -0.197 1.197 26 C -0.020 4.020 27 C -0.027 4.027 28 O -0.289 6.289 29 H 0.040 0.960 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.071 0.929 36 H 0.099 0.901 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.072 0.928 43 H 0.127 0.873 44 H 0.108 0.892 45 H 0.106 0.894 46 H 0.132 0.868 47 H 0.068 0.932 48 H 0.055 0.945 49 H 0.079 0.921 50 H 0.029 0.971 51 H 0.061 0.939 52 H 0.044 0.956 53 H 0.086 0.914 54 H 0.143 0.857 55 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 13.229 -9.473 -16.954 23.498 hybrid contribution -1.260 -0.112 1.876 2.262 sum 11.969 -9.584 -15.078 21.505 Atomic orbital electron populations 1.21800 0.96157 1.01989 1.01177 1.21482 0.95708 0.94045 1.03056 1.21494 0.98659 0.97561 0.93569 0.86586 1.21543 0.91396 1.01863 0.98781 1.21136 0.96472 1.00117 0.93169 1.21934 1.01514 0.99471 0.97929 1.21836 0.94820 1.01792 1.02046 1.21277 0.75691 0.80054 0.91671 1.90663 1.53201 1.64338 1.39063 1.48791 1.69841 1.06143 1.10101 1.22578 1.01518 0.88881 0.88396 1.22772 1.01137 0.99638 0.91585 1.22366 0.86490 0.88606 0.97426 1.22070 0.99286 0.91813 0.88271 1.20886 0.93887 0.96723 0.83548 1.44304 1.18084 1.69438 1.02152 1.19391 0.87997 1.38918 0.93257 0.91841 1.25810 0.98217 1.00137 0.99674 1.70082 1.10152 1.47770 1.29614 0.85420 0.77792 0.78285 0.79450 1.21424 1.21197 1.19735 1.21771 0.86156 0.94849 0.99196 1.23137 0.98070 0.99457 0.82076 1.87661 1.38914 1.75931 1.26382 0.96032 0.90971 0.91777 0.87859 0.93109 0.91574 0.92856 0.90069 0.91743 0.91983 0.92408 0.93193 0.91522 0.92807 0.87331 0.89214 0.89398 0.86820 0.93158 0.94500 0.92098 0.97108 0.93862 0.95602 0.91387 0.85738 0.94324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 9.77 71.98 0.70 -2.73 16 2 C -0.11 -2.16 4.96 30.59 0.15 -2.01 16 3 C -0.09 -1.94 1.64 -11.54 -0.02 -1.96 16 4 H 0.12 1.89 4.83 -2.38 -0.01 1.88 16 5 C -0.10 -1.76 4.13 30.60 0.13 -1.64 16 6 C -0.09 -1.12 2.79 -10.79 -0.03 -1.15 16 7 C -0.15 -1.52 8.96 71.99 0.64 -0.87 16 8 C -0.15 -1.73 9.19 71.98 0.66 -1.07 16 9 C 0.52 17.00 6.07 87.66 0.53 17.53 16 10 O -0.59 -25.18 15.75 -3.02 -0.05 -25.23 16 11 N -0.62 -19.82 3.33 -812.31 -2.71 -22.53 16 12 C 0.11 2.48 6.62 86.88 0.57 3.06 16 13 C -0.11 -3.19 6.21 31.80 0.20 -2.99 16 14 C 0.09 3.52 0.80 -10.36 -0.01 3.51 16 15 C 0.11 4.42 5.97 86.47 0.52 4.93 16 16 C 0.18 8.46 3.88 85.92 0.33 8.79 16 17 N -0.62 -31.41 2.97 -699.50 -2.08 -33.49 16 18 C -0.27 -14.92 9.65 84.03 0.81 -14.11 16 19 H 0.06 3.51 7.85 -2.91 -0.02 3.48 16 20 C -0.04 -2.40 5.07 84.86 0.43 -1.97 16 21 N -0.93 -54.84 11.07 21.65 0.24 -54.60 16 22 Si 0.96 46.16 29.57 68.60 2.03 48.18 16 23 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 26 C 0.11 4.41 6.72 86.35 0.58 4.99 16 27 C 0.05 1.74 6.76 72.08 0.49 2.22 16 28 O -0.37 -13.34 10.25 -148.97 -1.53 -14.86 16 29 H 0.02 0.63 6.81 -2.39 -0.02 0.62 16 30 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.10 1.45 6.26 -2.39 -0.01 1.43 16 33 H 0.05 1.29 7.69 -2.38 -0.02 1.27 16 34 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 35 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 36 H 0.08 0.92 6.25 -2.39 -0.01 0.90 16 37 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 38 H 0.06 0.58 6.46 -2.39 -0.02 0.56 16 39 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 40 H 0.05 0.63 8.14 -2.38 -0.02 0.61 16 41 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 42 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 43 H 0.11 1.76 6.90 -2.39 -0.02 1.74 16 44 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.09 2.54 8.01 -2.39 -0.02 2.52 16 46 H 0.11 2.72 8.14 -2.39 -0.02 2.70 16 47 H 0.05 2.17 6.03 -2.39 -0.01 2.16 16 48 H 0.04 1.80 7.59 -2.38 -0.02 1.78 16 49 H 0.06 3.34 6.01 -2.39 -0.01 3.32 16 50 H 0.01 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.25 14.42 8.31 -92.72 -0.77 13.65 16 52 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 53 H 0.07 2.71 7.96 -2.39 -0.02 2.69 16 54 H 0.12 3.33 8.14 -2.39 -0.02 3.31 16 55 H 0.04 1.42 6.24 -2.39 -0.01 1.40 16 Total: -1.00 -72.66 410.64 3.44 -69.22 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.85 Total: 18.78 kcal Atomic # 6 Polarization: 7.83 SS G_CDS: 6.69 Total: 14.53 kcal Atomic # 7 Polarization: -106.07 SS G_CDS: -4.55 Total: -110.62 kcal Atomic # 8 Polarization: -38.51 SS G_CDS: -1.58 Total: -40.09 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 2.03 Total: 48.18 kcal Total: -72.66 3.44 -69.22 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755403032.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.089 kcal (2) G-P(sol) polarization free energy of solvation -72.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.307 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds