Wall clock time and date at job start Tue Mar 31 2020 22:46:48
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 C 1.53001 * 109.47126 * 2 1
4 4 H 1.09004 * 109.46924 * 305.61350 * 3 2 1
5 5 C 1.53001 * 109.47375 * 65.61023 * 3 2 1
6 6 C 1.53000 * 109.47339 * 186.44383 * 5 3 2
7 7 C 1.53002 * 109.46937 * 64.72005 * 6 5 3
8 8 C 1.52999 * 109.47152 * 184.72191 * 6 5 3
9 9 C 1.50704 * 109.47418 * 185.61678 * 3 2 1
10 10 O 1.21277 * 119.99237 * 245.93863 * 9 3 2
11 11 N 1.34770 * 120.00196 * 65.92889 * 9 3 2
12 12 C 1.47530 * 125.64565 * 3.43223 * 11 9 3
13 13 C 1.55014 * 104.88031 * 203.96079 * 12 11 9
14 14 C 1.54509 * 101.56685 * 323.68388 * 13 12 11
15 15 C 1.47183 * 125.66115 * 183.42670 * 11 9 3
16 16 C 1.52515 * 110.06565 * 153.03515 * 14 13 12
17 17 N 1.47294 * 108.41669 * 72.17717 * 16 14 13
18 18 C 1.36940 * 121.05963 * 229.38328 * 17 16 14
19 19 H 1.07995 * 119.99687 * 151.45874 * 18 17 16
20 20 C 1.38814 * 120.00084 * 331.46762 * 18 17 16
21 21 N 1.31619 * 120.00085 * 341.59170 * 20 18 17
22 22 Si 1.86799 * 119.99892 * 161.59270 * 20 18 17
23 23 H 1.48500 * 109.47163 * 60.00039 * 22 20 18
24 24 H 1.48502 * 109.47205 * 179.97438 * 22 20 18
25 25 H 1.48497 * 109.47241 * 299.99967 * 22 20 18
26 26 C 1.47158 * 117.87999 * 49.36657 * 17 16 14
27 27 C 1.53282 * 108.53130 * 308.85655 * 26 17 16
28 28 O 1.42070 * 110.34754 * 276.03516 * 14 13 12
29 29 H 1.09004 * 109.46945 * 58.61440 * 1 2 3
30 30 H 1.09000 * 109.47054 * 178.61166 * 1 2 3
31 31 H 1.09000 * 109.47599 * 298.61357 * 1 2 3
32 32 H 1.08994 * 109.47393 * 240.00046 * 2 1 3
33 33 H 1.09001 * 109.47368 * 119.99411 * 2 1 3
34 34 H 1.09001 * 109.47169 * 306.44342 * 5 3 2
35 35 H 1.08996 * 109.46886 * 66.44108 * 5 3 2
36 36 H 1.09002 * 109.46922 * 304.72215 * 6 5 3
37 37 H 1.08996 * 109.47107 * 298.49562 * 7 6 5
38 38 H 1.08996 * 109.47031 * 58.50070 * 7 6 5
39 39 H 1.09003 * 109.47005 * 178.49800 * 7 6 5
40 40 H 1.09003 * 109.47029 * 60.00236 * 8 6 5
41 41 H 1.08999 * 109.47120 * 180.02562 * 8 6 5
42 42 H 1.09002 * 109.47226 * 299.99837 * 8 6 5
43 43 H 1.08997 * 110.33357 * 85.12482 * 12 11 9
44 44 H 1.09003 * 110.38895 * 322.83005 * 12 11 9
45 45 H 1.09005 * 111.01457 * 205.60085 * 13 12 11
46 46 H 1.09003 * 111.01237 * 81.76304 * 13 12 11
47 47 H 1.08999 * 109.90555 * 59.15065 * 15 11 9
48 48 H 1.08997 * 110.06733 * 297.97421 * 15 11 9
49 49 H 1.08996 * 109.67428 * 191.91095 * 16 14 13
50 50 H 1.09000 * 109.67101 * 312.40278 * 16 14 13
51 51 H 0.96999 * 120.00145 * 179.97438 * 21 20 18
52 52 H 1.08996 * 109.62730 * 68.56454 * 26 17 16
53 53 H 1.09001 * 109.62926 * 188.95048 * 26 17 16
54 54 H 1.08996 * 109.51898 * 172.85489 * 27 26 17
55 55 H 1.09002 * 109.51535 * 293.01190 * 27 26 17
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 1 1.5969 1.9845 -0.8355
5 6 1.6484 2.1220 1.3137
6 6 2.0154 3.6059 1.2497
7 6 1.1792 4.2917 0.1673
8 6 1.7328 4.2601 2.6036
9 6 3.5406 1.4449 -0.1391
10 8 4.2334 1.8425 0.7735
11 7 4.1126 1.0049 -1.2773
12 6 3.3921 0.5629 -2.4865
13 6 4.3813 -0.3814 -3.2164
14 6 5.7344 0.3089 -2.9337
15 6 5.5593 0.8858 -1.5202
16 6 6.8610 -0.7188 -2.9567
17 7 7.0865 -1.1311 -4.3526
18 6 7.1548 -2.4549 -4.6961
19 1 6.8625 -2.7716 -5.6864
20 6 7.5996 -3.3898 -3.7715
21 7 8.2861 -2.9991 -2.7187
22 14 7.2239 -5.2025 -4.0214
23 1 7.8152 -5.6582 -5.3051
24 1 7.8055 -5.9874 -2.9029
25 1 5.7529 -5.4031 -4.0551
26 6 7.2356 -0.0750 -5.3665
27 6 6.0581 0.8974 -5.2338
28 8 5.9672 1.3449 -3.8776
29 1 -0.3633 0.5352 -0.8773
30 1 -0.3633 -1.0274 -0.0249
31 1 -0.3634 0.4921 0.9021
32 1 1.8933 -0.5138 -0.8899
33 1 1.8934 -0.5137 0.8900
34 1 0.5745 2.0197 1.4697
35 1 2.1819 1.6511 2.1394
36 1 3.0739 3.7084 1.0105
37 1 1.4004 3.8435 -0.8012
38 1 0.1201 4.1662 0.3925
39 1 1.4214 5.3541 0.1398
40 1 2.3285 3.7715 3.3746
41 1 1.9938 5.3174 2.5578
42 1 0.6743 4.1576 2.8428
43 1 3.1497 1.4185 -3.1168
44 1 2.4853 0.0238 -2.2125
45 1 4.1745 -0.4129 -4.2861
46 1 4.3558 -1.3825 -2.7858
47 1 6.0046 0.2132 -0.7871
48 1 6.0309 1.8665 -1.4584
49 1 7.7711 -0.2747 -2.5536
50 1 6.5795 -1.5853 -2.3583
51 1 8.5966 -3.6523 -2.0723
52 1 8.1716 0.4592 -5.2038
53 1 7.2362 -0.5200 -6.3615
54 1 6.2170 1.7534 -5.8896
55 1 5.1342 0.3908 -5.5127
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001755403033.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 22:46:48
Heat of formation + Delta-G solvation = -86.001289 kcal
Electronic energy + Delta-G solvation = -32114.439720 eV
Core-core repulsion = 28150.892738 eV
Total energy + Delta-G solvation = -3963.546981 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 338.236 amu
Computer time = 1.39 seconds
Orbital eigenvalues (eV)
-41.80089 -40.52871 -37.95926 -37.25636 -36.26743 -35.13686 -33.27369 -32.78102
-30.89643 -29.92730 -29.10764 -27.99062 -27.66853 -25.76884 -25.21009 -24.14946
-23.07026 -22.12382 -21.20964 -20.52761 -19.80614 -18.95861 -18.40978 -17.58892
-16.99565 -16.55259 -16.32243 -16.18648 -16.02079 -15.76017 -15.62821 -15.26176
-15.18074 -14.86550 -14.57375 -14.41185 -14.18020 -13.94590 -13.69145 -13.58286
-13.33585 -13.24442 -13.13238 -12.99761 -12.82036 -12.80385 -12.61752 -12.53573
-12.47092 -12.33338 -12.21436 -12.09379 -11.94822 -11.85786 -11.71956 -11.49224
-11.35726 -11.18826 -11.11437 -10.80301 -10.63333 -10.46968 -9.69941 -8.72236
-7.91514 -5.39222 1.46642 1.48334 1.55529 1.60686 1.91486 2.47268
2.74270 3.20672 3.33438 3.51436 3.57217 3.72128 3.83263 3.93109
3.95786 4.13815 4.21753 4.23039 4.27954 4.30935 4.37282 4.40412
4.48186 4.51427 4.57422 4.58689 4.65564 4.67899 4.76347 4.82917
4.84911 4.89510 4.90081 4.93482 5.02344 5.04152 5.07280 5.12831
5.13339 5.14423 5.17276 5.22618 5.25219 5.27391 5.38765 5.45023
5.50406 5.52796 5.60184 5.61801 6.29005 6.36875 6.53242 7.04673
7.13880 7.73854 8.30522 9.14677
Molecular weight = 338.24amu
Principal moments of inertia in cm(-1)
A = 0.015255 B = 0.003154 C = 0.002928
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1835.008616 B = 8876.520537 C = 9561.001832
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.123 4.123
3 C -0.094 4.094
4 H 0.117 0.883
5 C -0.091 4.091
6 C -0.106 4.106
7 C -0.144 4.144
8 C -0.140 4.140
9 C 0.524 3.476
10 O -0.581 6.581
11 N -0.614 5.614
12 C 0.102 3.898
13 C -0.137 4.137
14 C 0.097 3.903
15 C 0.130 3.870
16 C 0.178 3.822
17 N -0.606 5.606
18 C -0.261 4.261
19 H 0.075 0.925
20 C -0.047 4.047
21 N -0.936 5.936
22 Si 0.966 3.034
23 H -0.274 1.274
24 H -0.299 1.299
25 H -0.272 1.272
26 C 0.102 3.898
27 C 0.053 3.947
28 O -0.383 6.383
29 H 0.070 0.930
30 H 0.062 0.938
31 H 0.065 0.935
32 H 0.073 0.927
33 H 0.054 0.946
34 H 0.098 0.902
35 H 0.048 0.952
36 H 0.045 0.955
37 H 0.052 0.948
38 H 0.073 0.927
39 H 0.051 0.949
40 H 0.041 0.959
41 H 0.053 0.947
42 H 0.069 0.931
43 H 0.086 0.914
44 H 0.110 0.890
45 H 0.098 0.902
46 H 0.069 0.931
47 H 0.060 0.940
48 H 0.062 0.938
49 H -0.011 1.011
50 H 0.059 0.941
51 H 0.250 0.750
52 H 0.010 0.990
53 H 0.076 0.924
54 H 0.119 0.881
55 H 0.065 0.935
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -20.364 10.538 1.843 23.003
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.160 4.160
3 C -0.115 4.115
4 H 0.135 0.865
5 C -0.128 4.128
6 C -0.125 4.125
7 C -0.201 4.201
8 C -0.197 4.197
9 C 0.315 3.685
10 O -0.461 6.461
11 N -0.347 5.347
12 C -0.019 4.019
13 C -0.175 4.175
14 C 0.055 3.945
15 C 0.006 3.994
16 C 0.052 3.948
17 N -0.331 5.331
18 C -0.391 4.391
19 H 0.093 0.907
20 C -0.243 4.243
21 N -0.581 5.581
22 Si 0.793 3.207
23 H -0.200 1.200
24 H -0.226 1.226
25 H -0.197 1.197
26 C -0.024 4.024
27 C -0.024 4.024
28 O -0.302 6.302
29 H 0.089 0.911
30 H 0.081 0.919
31 H 0.084 0.916
32 H 0.091 0.909
33 H 0.073 0.927
34 H 0.116 0.884
35 H 0.067 0.933
36 H 0.064 0.936
37 H 0.071 0.929
38 H 0.092 0.908
39 H 0.071 0.929
40 H 0.060 0.940
41 H 0.072 0.928
42 H 0.088 0.912
43 H 0.104 0.896
44 H 0.128 0.872
45 H 0.117 0.883
46 H 0.088 0.912
47 H 0.078 0.922
48 H 0.080 0.920
49 H 0.007 0.993
50 H 0.078 0.922
51 H 0.059 0.941
52 H 0.028 0.972
53 H 0.094 0.906
54 H 0.137 0.863
55 H 0.083 0.917
Dipole moment (debyes) X Y Z Total
from point charges -19.942 10.865 2.541 22.851
hybrid contribution 1.339 -1.375 0.132 1.924
sum -18.603 9.490 2.673 21.054
Atomic orbital electron populations
1.21789 0.92620 1.02703 1.03118 1.21672 0.98456 0.93287 1.02600
1.21491 0.88341 0.99581 1.02050 0.86507 1.21521 1.02070 0.94393
0.94863 1.21181 0.99623 0.95058 0.96606 1.21873 1.00419 0.99988
0.97819 1.21757 1.01978 1.00070 0.95941 1.21191 0.92062 0.75546
0.79726 1.90652 1.66195 1.48788 1.40511 1.48696 1.06544 1.64492
1.14959 1.22734 0.95917 0.98263 0.84992 1.23078 0.93539 0.98491
1.02424 1.22251 0.95973 0.88147 0.88129 1.21477 0.82928 1.00522
0.94454 1.20808 0.92635 0.94571 0.86804 1.44288 1.83762 1.01878
1.03146 1.19441 1.36940 0.82986 0.99750 0.90719 1.25858 0.97568
1.02278 0.98600 1.70206 1.38369 1.34489 1.15067 0.85373 0.78335
0.80078 0.76885 1.20010 1.22596 1.19719 1.21820 0.96179 0.90550
0.93816 1.23196 0.98007 0.98883 0.82323 1.87683 1.92926 1.32655
1.16928 0.91084 0.91872 0.91574 0.90851 0.92729 0.88376 0.93303
0.93616 0.92908 0.90844 0.92941 0.93956 0.92759 0.91168 0.89568
0.87196 0.88338 0.91195 0.92165 0.91967 0.99313 0.92231 0.94139
0.97182 0.90581 0.86291 0.91676
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.69 9.65 71.98 0.69 -0.99 16
2 C -0.12 -2.16 5.18 30.59 0.16 -2.00 16
3 C -0.09 -1.91 1.44 -11.54 -0.02 -1.93 16
4 H 0.12 1.91 6.26 -2.38 -0.01 1.90 16
5 C -0.09 -1.78 3.69 30.59 0.11 -1.67 16
6 C -0.11 -2.21 2.73 -10.79 -0.03 -2.24 16
7 C -0.14 -2.28 8.92 71.98 0.64 -1.64 16
8 C -0.14 -2.54 9.19 71.98 0.66 -1.88 16
9 C 0.52 15.96 6.71 87.66 0.59 16.55 16
10 O -0.58 -22.45 14.65 -3.02 -0.04 -22.50 16
11 N -0.61 -18.84 3.33 -812.20 -2.71 -21.54 16
12 C 0.10 2.47 6.51 86.87 0.57 3.03 16
13 C -0.14 -4.27 5.91 31.80 0.19 -4.08 16
14 C 0.10 3.65 0.83 -10.22 -0.01 3.64 16
15 C 0.13 4.86 6.24 86.47 0.54 5.40 16
16 C 0.18 8.61 3.93 86.07 0.34 8.95 16
17 N -0.61 -29.47 2.93 -698.69 -2.05 -31.52 16
18 C -0.26 -13.72 9.62 84.03 0.81 -12.91 16
19 H 0.08 3.74 7.89 -2.91 -0.02 3.72 16
20 C -0.05 -2.56 4.89 84.86 0.41 -2.15 16
21 N -0.94 -55.23 11.45 21.65 0.25 -54.98 16
22 Si 0.97 43.45 29.59 68.60 2.03 45.48 16
23 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16
24 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16
25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16
26 C 0.10 4.04 6.72 86.35 0.58 4.62 16
27 C 0.05 1.66 6.76 72.08 0.49 2.15 16
28 O -0.38 -13.89 10.22 -148.98 -1.52 -15.41 16
29 H 0.07 0.65 8.14 -2.38 -0.02 0.63 16
30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16
31 H 0.07 0.68 6.52 -2.39 -0.02 0.67 16
32 H 0.07 1.32 5.14 -2.39 -0.01 1.31 16
33 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16
34 H 0.10 1.37 6.34 -2.39 -0.02 1.35 16
35 H 0.05 1.19 7.81 -2.39 -0.02 1.17 16
36 H 0.05 1.31 6.23 -2.39 -0.01 1.30 16
37 H 0.05 0.84 6.49 -2.39 -0.02 0.82 16
38 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16
39 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16
40 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16
41 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16
42 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16
43 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16
44 H 0.11 2.03 4.93 -2.39 -0.01 2.02 16
45 H 0.10 2.87 5.99 -2.38 -0.01 2.85 16
46 H 0.07 2.41 7.86 -2.39 -0.02 2.39 16
47 H 0.06 2.48 7.79 -2.39 -0.02 2.46 16
48 H 0.06 2.44 8.06 -2.39 -0.02 2.42 16
49 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16
50 H 0.06 3.20 6.24 -2.39 -0.01 3.18 16
51 H 0.25 14.42 8.31 -92.71 -0.77 13.65 16
52 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16
53 H 0.08 2.78 7.96 -2.39 -0.02 2.77 16
54 H 0.12 2.92 8.14 -2.39 -0.02 2.90 16
55 H 0.07 1.86 6.14 -2.39 -0.01 1.85 16
Total: -1.00 -69.33 406.10 3.54 -65.79
By element:
Atomic # 1 Polarization: 20.99 SS G_CDS: 0.86 Total: 21.84 kcal
Atomic # 6 Polarization: 6.11 SS G_CDS: 6.73 Total: 12.84 kcal
Atomic # 7 Polarization: -103.54 SS G_CDS: -4.51 Total: -108.04 kcal
Atomic # 8 Polarization: -36.34 SS G_CDS: -1.57 Total: -37.91 kcal
Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal
Total: -69.33 3.54 -65.79 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001755403033.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -20.212 kcal
(2) G-P(sol) polarization free energy of solvation -69.326 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.539 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.537 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.789 kcal
(6) G-S(sol) free energy of system = (1) + (5) -86.001 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.39 seconds