Wall clock time and date at job start Tue Mar 31 2020 21:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47086 * 2 1 4 4 H 1.08997 * 109.47526 * 305.29018 * 3 2 1 5 5 O 1.42904 * 109.46933 * 65.29048 * 3 2 1 6 6 C 1.42892 * 113.99992 * 208.72585 * 5 3 2 7 7 C 1.53005 * 109.47169 * 208.37566 * 6 5 3 8 8 C 1.53002 * 109.47265 * 180.02562 * 7 6 5 9 9 C 1.52995 * 109.46973 * 59.99754 * 8 7 6 10 10 C 1.52996 * 109.47677 * 299.99994 * 9 8 7 11 11 C 1.53001 * 109.47232 * 88.37757 * 6 5 3 12 12 C 1.50693 * 109.46966 * 185.28899 * 3 2 1 13 13 O 1.21284 * 120.00252 * 245.00344 * 12 3 2 14 14 N 1.34777 * 120.00260 * 65.00208 * 12 3 2 15 15 C 1.46496 * 120.00349 * 179.97438 * 14 12 3 16 16 H 1.08992 * 110.64710 * 325.70809 * 15 14 12 17 17 C 1.55164 * 110.71464 * 88.84753 * 15 14 12 18 18 C 1.54916 * 101.57840 * 153.86744 * 17 15 14 19 19 N 1.47427 * 104.83073 * 322.98665 * 18 17 15 20 20 C 1.36939 * 125.64436 * 204.16593 * 19 18 17 21 21 H 1.08004 * 119.99663 * 179.97438 * 20 19 18 22 22 C 1.38806 * 120.00284 * 359.97438 * 20 19 18 23 23 N 1.31623 * 119.99848 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00245 * 180.02562 * 22 20 19 25 25 H 1.48498 * 109.47069 * 89.99723 * 24 22 20 26 26 H 1.48496 * 109.47441 * 210.00465 * 24 22 20 27 27 H 1.48506 * 109.46761 * 330.00171 * 24 22 20 28 28 C 1.47316 * 108.73691 * 24.29020 * 19 18 17 29 29 H 1.09000 * 109.84646 * 239.38753 * 28 19 18 30 30 C 1.52997 * 110.06689 * 118.12392 * 28 19 18 31 31 H 1.08994 * 109.47246 * 174.80157 * 1 2 3 32 32 H 1.09003 * 109.46656 * 294.79383 * 1 2 3 33 33 H 1.09003 * 109.47341 * 54.79437 * 1 2 3 34 34 H 1.09007 * 109.46448 * 240.00602 * 2 1 3 35 35 H 1.08999 * 109.46946 * 120.00740 * 2 1 3 36 36 H 1.08994 * 109.47352 * 328.37791 * 6 5 3 37 37 H 1.09005 * 109.47042 * 60.00211 * 7 6 5 38 38 H 1.08994 * 109.47167 * 300.00338 * 7 6 5 39 39 H 1.09001 * 109.46790 * 299.99945 * 8 7 6 40 40 H 1.09000 * 109.47081 * 180.02562 * 8 7 6 41 41 H 1.09001 * 109.47207 * 60.00446 * 9 8 7 42 42 H 1.09007 * 109.47067 * 179.97438 * 9 8 7 43 43 H 1.09000 * 109.47100 * 179.97438 * 10 9 8 44 44 H 1.09001 * 109.47171 * 300.00474 * 10 9 8 45 45 H 1.08993 * 109.46952 * 300.00250 * 11 6 5 46 46 H 1.09007 * 109.46842 * 60.00069 * 11 6 5 47 47 H 0.97002 * 119.99447 * 0.02562 * 14 12 3 48 48 H 1.09002 * 111.00590 * 271.93592 * 17 15 14 49 49 H 1.08998 * 111.00663 * 35.75521 * 17 15 14 50 50 H 1.08998 * 110.36777 * 81.83054 * 18 17 15 51 51 H 1.08999 * 110.36265 * 204.03946 * 18 17 15 52 52 H 0.97005 * 119.99336 * 179.97438 * 23 22 20 53 53 H 1.08997 * 109.47280 * 302.26826 * 30 28 19 54 54 H 1.09010 * 109.46746 * 62.26705 * 30 28 19 55 55 H 1.08998 * 109.46965 * 182.26468 * 30 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6015 1.9830 -0.8388 5 8 1.6678 2.0793 1.2240 6 6 1.4892 3.4926 1.1129 7 6 1.7960 4.1528 2.4587 8 6 1.6041 5.6661 2.3399 9 6 0.1578 5.9671 1.9421 10 6 -0.1490 5.3070 0.5963 11 6 0.0430 3.7942 0.7148 12 6 3.5413 1.4445 -0.1310 13 8 4.2288 1.8596 0.7779 14 7 4.1201 0.9849 -1.2580 15 6 5.5795 0.9873 -1.3856 16 1 6.0086 1.8485 -0.8736 17 6 6.1806 -0.3335 -0.8362 18 6 7.5001 -0.4333 -1.6419 19 7 7.1623 0.0756 -2.9837 20 6 7.8234 -0.2308 -4.1431 21 1 7.4963 0.1954 -5.0800 22 6 8.9138 -1.0893 -4.1142 23 7 9.3127 -1.6084 -2.9723 24 14 9.8160 -1.5068 -5.6957 25 1 10.9091 -0.5259 -5.9158 26 1 10.3898 -2.8726 -5.5926 27 1 8.8663 -1.4536 -6.8362 28 6 5.9978 0.9709 -2.8710 29 1 5.1791 0.5918 -3.4825 30 6 6.3762 2.3835 -3.3206 31 1 -0.3633 -1.0234 -0.0931 32 1 -0.3633 0.4310 0.9330 33 1 -0.3634 0.5925 -0.8397 34 1 1.8933 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 2.1646 3.8856 0.3531 37 1 2.8263 3.9380 2.7423 38 1 1.1205 3.7598 3.2185 39 1 2.2793 6.0594 1.5800 40 1 1.8231 6.1364 3.2985 41 1 -0.5175 5.5738 2.7020 42 1 0.0209 7.0453 1.8579 43 1 -1.1796 5.5211 0.3132 44 1 0.5262 5.7003 -0.1636 45 1 -0.1755 3.3239 -0.2439 46 1 -0.6325 3.4012 1.4747 47 1 3.5702 0.6531 -1.9850 48 1 6.3804 -0.2570 0.2326 49 1 5.5268 -1.1790 -1.0499 50 1 8.2717 0.1859 -1.1844 51 1 7.8315 -1.4700 -1.6999 52 1 10.0745 -2.2086 -2.9523 53 1 7.2079 2.7464 -2.7167 54 1 6.6704 2.3642 -4.3700 55 1 5.5199 3.0462 -3.1954 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001707250708.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:59:37 Heat of formation + Delta-G solvation = -104.342684 kcal Electronic energy + Delta-G solvation = -31134.840484 eV Core-core repulsion = 27170.498160 eV Total energy + Delta-G solvation = -3964.342324 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.40560 -40.07359 -39.06347 -37.45081 -35.67310 -34.54513 -33.60427 -32.07648 -31.69681 -30.66689 -30.47718 -28.26920 -26.18715 -25.73665 -23.60720 -23.27554 -23.02343 -22.17227 -21.55702 -21.12253 -20.71684 -18.74004 -18.39152 -18.21354 -17.30208 -16.73691 -16.45363 -15.95006 -15.75125 -15.64779 -15.35752 -15.24437 -15.01476 -14.91384 -14.55085 -14.36937 -14.03319 -13.91076 -13.75150 -13.65346 -13.28803 -13.24994 -13.12278 -12.94063 -12.90274 -12.76166 -12.61781 -12.28090 -12.19568 -12.11626 -12.04713 -12.01722 -11.96793 -11.86837 -11.70235 -11.58565 -11.46529 -11.44194 -11.24713 -10.90250 -10.73954 -10.17430 -10.03072 -8.90846 -7.74859 -5.20113 1.48332 1.49973 1.55976 1.58429 2.00587 2.51307 2.64774 3.35739 3.50935 3.71279 3.73749 3.82200 3.84003 3.90780 3.92979 3.98553 4.05167 4.18970 4.24181 4.29203 4.33472 4.43955 4.48134 4.54299 4.56723 4.59547 4.61319 4.67061 4.70539 4.78558 4.85960 4.91905 4.93929 5.03160 5.03477 5.10918 5.13499 5.13840 5.20632 5.22218 5.24264 5.32239 5.34300 5.39745 5.45996 5.49400 5.50842 5.58349 5.60972 5.79182 6.14404 6.29621 6.58497 7.10639 7.24522 7.78287 8.42166 9.27214 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.019635 B = 0.002404 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1425.654259 B =11642.278772 C =12073.926202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.115 4.115 3 C 0.084 3.916 4 H 0.112 0.888 5 O -0.365 6.365 6 C 0.088 3.912 7 C -0.114 4.114 8 C -0.115 4.115 9 C -0.119 4.119 10 C -0.117 4.117 11 C -0.133 4.133 12 C 0.485 3.515 13 O -0.573 6.573 14 N -0.701 5.701 15 C 0.152 3.848 16 H 0.073 0.927 17 C -0.138 4.138 18 C 0.159 3.841 19 N -0.613 5.613 20 C -0.225 4.225 21 H 0.087 0.913 22 C -0.071 4.071 23 N -0.952 5.952 24 Si 0.979 3.021 25 H -0.291 1.291 26 H -0.297 1.297 27 H -0.265 1.265 28 C 0.152 3.848 29 H 0.057 0.943 30 C -0.146 4.146 31 H 0.068 0.932 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.096 0.904 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.081 0.919 44 H 0.060 0.940 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.414 0.586 48 H 0.059 0.941 49 H 0.072 0.928 50 H -0.019 1.019 51 H 0.078 0.922 52 H 0.245 0.755 53 H 0.032 0.968 54 H 0.049 0.951 55 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.888 11.245 5.796 27.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.153 4.153 3 C 0.022 3.978 4 H 0.130 0.870 5 O -0.283 6.283 6 C 0.030 3.970 7 C -0.152 4.152 8 C -0.153 4.153 9 C -0.156 4.156 10 C -0.154 4.154 11 C -0.171 4.171 12 C 0.272 3.728 13 O -0.452 6.452 14 N -0.354 5.354 15 C 0.046 3.954 16 H 0.091 0.909 17 C -0.177 4.177 18 C 0.033 3.967 19 N -0.339 5.339 20 C -0.354 4.354 21 H 0.105 0.895 22 C -0.263 4.263 23 N -0.602 5.602 24 Si 0.807 3.193 25 H -0.218 1.218 26 H -0.223 1.223 27 H -0.190 1.190 28 C 0.045 3.955 29 H 0.074 0.926 30 C -0.206 4.206 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.099 0.901 44 H 0.079 0.921 45 H 0.092 0.908 46 H 0.091 0.909 47 H 0.251 0.749 48 H 0.078 0.922 49 H 0.091 0.909 50 H -0.001 1.001 51 H 0.096 0.904 52 H 0.055 0.945 53 H 0.051 0.949 54 H 0.068 0.932 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -24.291 11.336 6.546 27.593 hybrid contribution 1.427 -0.418 -0.907 1.742 sum -22.864 10.918 5.639 25.957 Atomic orbital electron populations 1.21680 0.92757 1.02793 1.02607 1.21630 0.98577 0.91469 1.03597 1.22234 0.87988 0.97684 0.89872 0.87032 1.88004 1.87822 1.21025 1.31400 1.22262 0.96567 0.80197 0.97932 1.21535 1.01154 0.96028 0.96436 1.21506 0.97876 0.93776 1.02093 1.21569 0.95593 1.01055 0.97420 1.21509 1.02474 0.93838 0.97609 1.22015 0.95354 0.97352 1.02383 1.22142 0.92656 0.76448 0.81594 1.90689 1.66097 1.47964 1.40436 1.45916 1.06540 1.64211 1.18778 1.21685 0.80325 0.97557 0.95800 0.90863 1.23178 0.98249 0.97455 0.98840 1.21645 0.91528 1.00065 0.83451 1.44800 1.33142 1.52160 1.03775 1.19407 1.08023 1.21529 0.86449 0.89525 1.25629 0.99899 1.00671 1.00076 1.70055 1.28552 1.36559 1.25078 0.85064 0.78456 0.76510 0.79221 1.21834 1.22333 1.18989 1.21252 0.90413 0.90894 0.92942 0.92558 1.22119 1.00638 0.96894 1.00923 0.91317 0.92692 0.91171 0.88576 0.92227 0.93666 0.93697 0.91137 0.92472 0.90808 0.91390 0.90700 0.90058 0.92126 0.90822 0.90910 0.74860 0.92230 0.90928 1.00074 0.90412 0.94485 0.94859 0.93162 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.79 9.76 71.98 0.70 -1.09 16 2 C -0.11 -1.97 5.61 30.60 0.17 -1.80 16 3 C 0.08 1.74 2.30 29.85 0.07 1.81 16 4 H 0.11 1.67 7.47 -2.39 -0.02 1.65 16 5 O -0.36 -8.84 8.82 -129.99 -1.15 -9.98 16 6 C 0.09 1.80 2.39 30.60 0.07 1.87 16 7 C -0.11 -2.37 5.57 30.60 0.17 -2.20 16 8 C -0.11 -1.82 5.92 30.59 0.18 -1.64 16 9 C -0.12 -1.41 5.92 30.59 0.18 -1.23 16 10 C -0.12 -1.35 5.92 30.58 0.18 -1.17 16 11 C -0.13 -1.87 5.49 30.58 0.17 -1.71 16 12 C 0.48 14.07 7.06 87.65 0.62 14.68 16 13 O -0.57 -22.33 16.19 15.95 0.26 -22.07 16 14 N -0.70 -19.01 5.09 -436.92 -2.22 -21.23 16 15 C 0.15 5.46 2.79 46.18 0.13 5.59 16 16 H 0.07 2.93 7.33 -2.39 -0.02 2.92 16 17 C -0.14 -5.57 6.77 31.99 0.22 -5.35 16 18 C 0.16 8.05 5.89 86.86 0.51 8.57 16 19 N -0.61 -30.57 3.14 -667.55 -2.10 -32.66 16 20 C -0.23 -12.16 9.91 84.03 0.83 -11.32 16 21 H 0.09 4.41 7.83 -2.91 -0.02 4.39 16 22 C -0.07 -3.95 5.49 84.86 0.47 -3.49 16 23 N -0.95 -56.92 10.09 21.65 0.22 -56.70 16 24 Si 0.98 45.14 29.55 68.60 2.03 47.17 16 25 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 26 H -0.30 -13.86 7.11 99.48 0.71 -13.15 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 28 C 0.15 5.82 3.49 45.28 0.16 5.98 16 29 H 0.06 1.98 7.70 -2.39 -0.02 1.96 16 30 C -0.15 -5.18 9.15 71.98 0.66 -4.52 16 31 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.05 0.80 7.97 -2.39 -0.02 0.78 16 33 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.10 1.36 7.76 -2.38 -0.02 1.34 16 35 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.05 1.03 7.79 -2.39 -0.02 1.01 16 37 H 0.04 1.18 8.14 -2.38 -0.02 1.16 16 38 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 43 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 44 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 45 H 0.07 0.88 7.80 -2.39 -0.02 0.86 16 46 H 0.07 1.02 8.14 -2.38 -0.02 1.00 16 47 H 0.41 8.43 8.04 -92.71 -0.75 7.68 16 48 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 49 H 0.07 2.77 8.14 -2.39 -0.02 2.75 16 50 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 51 H 0.08 4.45 5.88 -2.39 -0.01 4.44 16 52 H 0.25 14.33 8.31 -92.70 -0.77 13.56 16 53 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 54 H 0.05 1.81 8.06 -2.38 -0.02 1.79 16 55 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 Total: -1.00 -70.88 423.98 2.62 -68.27 By element: Atomic # 1 Polarization: 24.15 SS G_CDS: 0.09 Total: 24.24 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 5.49 Total: 2.98 kcal Atomic # 7 Polarization: -106.50 SS G_CDS: -4.10 Total: -110.59 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -0.89 Total: -32.06 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 2.03 Total: 47.17 kcal Total: -70.88 2.62 -68.27 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001707250708.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.076 kcal (2) G-P(sol) polarization free energy of solvation -70.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds