Wall clock time and date at job start Tue Mar 31 2020 23:09:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08993 * 109.47464 * 2 1 4 4 C 1.53006 * 109.46794 * 120.00106 * 2 1 3 5 5 C 1.52999 * 109.46794 * 179.97438 * 4 2 1 6 6 C 1.53001 * 109.47460 * 299.99821 * 5 4 2 7 7 C 1.53002 * 109.47053 * 59.99931 * 6 5 4 8 8 C 1.52995 * 109.47263 * 300.00578 * 7 6 5 9 9 H 1.09005 * 109.47448 * 179.97438 * 8 7 6 10 10 O 1.42902 * 109.46933 * 299.99453 * 8 7 6 11 11 C 1.42897 * 114.00175 * 269.99883 * 10 8 7 12 12 C 1.50708 * 109.46987 * 179.97438 * 11 10 8 13 13 O 1.21277 * 120.00004 * 0.02562 * 12 11 10 14 14 N 1.34770 * 119.99651 * 180.02562 * 12 11 10 15 15 C 1.46506 * 119.99707 * 174.58616 * 14 12 11 16 16 C 1.52994 * 110.43618 * 66.72484 * 15 14 12 17 17 N 1.46498 * 109.47431 * 52.44901 * 16 15 14 18 18 C 1.36934 * 119.99981 * 185.01513 * 17 16 15 19 19 H 1.07996 * 120.00316 * 359.97438 * 18 17 16 20 20 C 1.38819 * 120.00067 * 179.97438 * 18 17 16 21 21 N 1.31620 * 119.99677 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00153 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46990 * 0.02562 * 22 20 18 24 24 H 1.48507 * 109.46646 * 119.99873 * 22 20 18 25 25 H 1.48497 * 109.47519 * 240.00222 * 22 20 18 26 26 C 1.54889 * 110.59797 * 189.34077 * 15 14 12 27 27 C 1.54892 * 102.75071 * 80.78990 * 26 15 14 28 28 C 1.54265 * 104.19623 * 37.94206 * 27 26 15 29 29 C 1.53880 * 106.59727 * 336.39126 * 28 27 26 30 30 H 1.08995 * 109.47156 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.47343 * 300.00389 * 1 2 3 32 32 H 1.09011 * 109.46572 * 60.00035 * 1 2 3 33 33 H 1.08995 * 109.47007 * 60.00229 * 4 2 1 34 34 H 1.08996 * 109.46771 * 299.99855 * 4 2 1 35 35 H 1.09005 * 109.47230 * 179.97438 * 5 4 2 36 36 H 1.08993 * 109.47464 * 59.99894 * 5 4 2 37 37 H 1.09002 * 109.46706 * 300.00494 * 6 5 4 38 38 H 1.08995 * 109.47738 * 180.02562 * 6 5 4 39 39 H 1.08996 * 109.46853 * 180.02562 * 7 6 5 40 40 H 1.09005 * 109.46709 * 60.00188 * 7 6 5 41 41 H 1.08994 * 109.46998 * 60.00584 * 11 10 8 42 42 H 1.08998 * 109.47560 * 300.00344 * 11 10 8 43 43 H 0.97001 * 120.00722 * 354.58528 * 14 12 11 44 44 H 1.08997 * 109.47546 * 172.45495 * 16 15 14 45 45 H 1.09004 * 109.47178 * 292.44949 * 16 15 14 46 46 H 0.96997 * 120.00081 * 5.01167 * 17 16 15 47 47 H 0.96997 * 119.99989 * 180.02562 * 21 20 18 48 48 H 1.09011 * 110.75926 * 322.47620 * 26 15 14 49 49 H 1.09000 * 110.75752 * 199.10395 * 26 15 14 50 50 H 1.08996 * 110.48451 * 279.25957 * 27 26 15 51 51 H 1.09003 * 110.48657 * 156.62137 * 27 26 15 52 52 H 1.09002 * 110.03059 * 95.66904 * 28 27 26 53 53 H 1.08992 * 110.03357 * 217.06007 * 28 27 26 54 54 H 1.09002 * 110.03427 * 119.28141 * 29 28 27 55 55 H 1.09000 * 110.03142 * 240.71554 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 3.5699 -0.7219 1.2490 6 6 4.0795 -1.4435 -0.0002 7 6 3.5695 -0.7223 -1.2495 8 6 2.0396 -0.7216 -1.2492 9 1 1.6762 -0.2074 -2.1390 10 8 1.5627 -2.0687 -1.2490 11 6 1.3684 -2.6168 -2.5543 12 6 0.8677 -4.0332 -2.4350 13 8 0.6939 -4.5247 -1.3400 14 7 0.6132 -4.7537 -3.5452 15 6 0.2408 -6.1661 -3.4324 16 6 -1.1247 -6.3063 -2.7569 17 7 -2.1015 -5.4629 -3.4504 18 6 -3.3747 -5.3452 -2.9603 19 1 -3.6590 -5.8745 -2.0628 20 6 -4.3001 -4.5456 -3.6170 21 7 -3.9538 -3.9010 -4.7111 22 14 -6.0371 -4.3856 -2.9489 23 1 -6.1712 -5.2048 -1.7175 24 1 -6.3152 -2.9624 -2.6288 25 1 -7.0057 -4.8621 -3.9687 26 6 0.2272 -6.8391 -4.8274 27 6 1.7256 -7.1438 -5.0746 28 6 2.2588 -7.5681 -3.6906 29 6 1.3147 -6.9464 -2.6464 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8901 33 1 1.6766 -1.7489 1.2492 34 1 1.6766 -0.2075 2.1392 35 1 3.9333 -1.2353 2.1392 36 1 3.9337 0.3056 1.2487 37 1 3.7157 -2.4710 0.0000 38 1 5.1694 -1.4443 -0.0003 39 1 3.9321 -1.2366 -2.1394 40 1 3.9333 0.3053 -1.2497 41 1 2.3146 -2.6107 -3.0954 42 1 0.6367 -2.0167 -3.0952 43 1 0.6764 -4.3371 -4.4189 44 1 -1.4468 -7.3467 -2.8010 45 1 -1.0489 -5.9933 -1.7156 46 1 -1.8463 -4.9878 -4.2566 47 1 -4.6003 -3.3420 -5.1698 48 1 -0.1575 -6.1541 -5.5831 49 1 -0.3558 -7.7598 -4.8064 50 1 2.2434 -6.2513 -5.4258 51 1 1.8362 -7.9572 -5.7918 52 1 2.2482 -8.6545 -3.6034 53 1 3.2720 -7.1921 -3.5495 54 1 0.8461 -7.7312 -2.0526 55 1 1.8696 -6.2681 -1.9983 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001481907607.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:09:07 Heat of formation + Delta-G solvation = -119.606069 kcal Electronic energy + Delta-G solvation = -31783.861385 eV Core-core repulsion = 27818.857191 eV Total energy + Delta-G solvation = -3965.004194 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.41383 -40.44699 -38.74378 -36.81929 -36.20800 -34.42093 -33.49819 -33.05945 -31.16384 -30.13158 -29.67220 -28.33449 -26.98676 -26.24352 -24.00574 -23.42459 -22.42782 -22.02778 -21.35263 -20.56015 -20.25250 -19.16649 -18.23809 -17.48591 -17.21814 -16.81276 -16.48894 -16.26518 -16.12395 -15.72969 -15.53659 -15.28928 -15.07614 -14.86484 -14.62612 -14.40682 -14.19955 -13.92866 -13.87002 -13.73716 -13.45731 -13.20987 -13.01685 -12.85428 -12.57246 -12.51025 -12.44652 -12.41474 -12.34543 -12.16515 -12.06583 -11.91916 -11.77787 -11.76878 -11.66587 -11.41268 -11.35758 -11.26578 -11.01596 -10.84430 -10.49521 -10.33655 -9.88257 -8.96481 -7.96841 -5.22482 1.42680 1.43653 1.53527 1.74449 1.96673 2.53573 3.07368 3.35986 3.50432 3.71106 3.72254 3.81207 3.86922 3.91905 3.98717 4.17826 4.18120 4.22512 4.27332 4.32504 4.41428 4.43347 4.55461 4.56147 4.60416 4.61727 4.64305 4.70539 4.76342 4.82780 4.89949 4.90625 4.93081 4.94278 5.05091 5.07910 5.08537 5.13172 5.17139 5.23267 5.30673 5.31072 5.34454 5.35257 5.42014 5.45209 5.45448 5.52297 5.62857 5.77201 6.24979 6.27002 6.71484 7.33955 7.41802 8.07601 8.37788 9.26221 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008510 B = 0.004029 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3289.328992 B = 6948.627910 C = 9425.335592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.081 4.081 3 H 0.105 0.895 4 C -0.112 4.112 5 C -0.113 4.113 6 C -0.115 4.115 7 C -0.134 4.134 8 C 0.082 3.918 9 H 0.071 0.929 10 O -0.372 6.372 11 C 0.049 3.951 12 C 0.513 3.487 13 O -0.562 6.562 14 N -0.697 5.697 15 C 0.173 3.827 16 C 0.149 3.851 17 N -0.726 5.726 18 C -0.244 4.244 19 H 0.059 0.941 20 C -0.065 4.065 21 N -0.960 5.960 22 Si 0.965 3.035 23 H -0.276 1.276 24 H -0.293 1.293 25 H -0.286 1.286 26 C -0.115 4.115 27 C -0.112 4.112 28 C -0.114 4.114 29 C -0.121 4.121 30 H 0.029 0.971 31 H 0.062 0.938 32 H 0.054 0.946 33 H 0.037 0.963 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.078 0.922 37 H 0.040 0.960 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.081 0.919 43 H 0.408 0.592 44 H 0.018 0.982 45 H 0.006 0.994 46 H 0.378 0.622 47 H 0.252 0.748 48 H 0.070 0.930 49 H 0.076 0.924 50 H 0.076 0.924 51 H 0.085 0.915 52 H 0.075 0.925 53 H 0.071 0.929 54 H 0.061 0.939 55 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.207 5.637 1.548 21.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.100 4.100 3 H 0.123 0.877 4 C -0.149 4.149 5 C -0.150 4.150 6 C -0.152 4.152 7 C -0.172 4.172 8 C 0.025 3.975 9 H 0.089 0.911 10 O -0.291 6.291 11 C -0.031 4.031 12 C 0.300 3.700 13 O -0.440 6.440 14 N -0.350 5.350 15 C 0.087 3.913 16 C 0.021 3.979 17 N -0.369 5.369 18 C -0.377 4.377 19 H 0.077 0.923 20 C -0.258 4.258 21 N -0.611 5.611 22 Si 0.795 3.205 23 H -0.201 1.201 24 H -0.220 1.220 25 H -0.213 1.213 26 C -0.153 4.153 27 C -0.149 4.149 28 C -0.151 4.151 29 C -0.160 4.160 30 H 0.048 0.952 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.056 0.944 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.097 0.903 37 H 0.059 0.941 38 H 0.091 0.909 39 H 0.087 0.913 40 H 0.111 0.889 41 H 0.125 0.875 42 H 0.099 0.901 43 H 0.244 0.756 44 H 0.036 0.964 45 H 0.024 0.976 46 H 0.211 0.789 47 H 0.061 0.939 48 H 0.089 0.911 49 H 0.095 0.905 50 H 0.095 0.905 51 H 0.104 0.896 52 H 0.093 0.907 53 H 0.090 0.910 54 H 0.080 0.920 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 20.937 5.125 2.640 21.717 hybrid contribution -1.576 0.408 -0.278 1.652 sum 19.361 5.533 2.363 20.274 Atomic orbital electron populations 1.21767 0.96005 1.00780 1.01842 1.21253 0.95035 0.99580 0.94084 0.87732 1.21492 0.96411 0.99825 0.97220 1.21496 0.94539 1.01263 0.97729 1.21404 1.00167 0.98973 0.94685 1.22010 0.94270 1.02315 0.98568 1.22422 0.94334 0.82009 0.98734 0.91115 1.88052 1.86844 1.28922 1.25300 1.22253 1.02183 0.91323 0.87355 1.20672 0.77023 0.88077 0.84265 1.90660 1.52471 1.72618 1.28291 1.45623 1.69787 1.10755 1.08876 1.21265 0.92295 0.80721 0.97019 1.21102 0.88864 0.93136 0.94832 1.42208 1.08216 1.55935 1.30572 1.19549 0.89118 1.22393 1.06590 0.92279 1.25364 1.01715 1.00320 0.98391 1.69767 1.35253 1.35546 1.20556 0.85198 0.80732 0.77038 0.77565 1.20100 1.21970 1.21316 1.22687 0.98495 1.00456 0.93653 1.22350 0.93320 1.02239 0.96980 1.22099 0.98384 1.00828 0.93817 1.22372 0.96457 0.98810 0.98335 0.95193 0.91855 0.92644 0.94421 0.91626 0.92218 0.90326 0.94108 0.90940 0.91340 0.88895 0.87481 0.90109 0.75559 0.96411 0.97554 0.78878 0.93943 0.91137 0.90520 0.90510 0.89641 0.90672 0.91009 0.92037 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.77 9.05 71.98 0.65 -3.12 16 2 C -0.08 -1.73 2.55 -10.79 -0.03 -1.76 16 3 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 4 C -0.11 -2.54 5.06 30.60 0.15 -2.39 16 5 C -0.11 -2.05 5.92 30.59 0.18 -1.87 16 6 C -0.11 -2.20 5.78 30.60 0.18 -2.02 16 7 C -0.13 -2.26 5.63 30.59 0.17 -2.09 16 8 C 0.08 1.80 2.35 30.59 0.07 1.87 16 9 H 0.07 1.37 7.79 -2.38 -0.02 1.35 16 10 O -0.37 -11.30 7.49 -129.94 -0.97 -12.28 16 11 C 0.05 1.34 6.23 71.24 0.44 1.79 16 12 C 0.51 18.40 7.09 87.66 0.62 19.02 16 13 O -0.56 -25.53 13.46 16.02 0.22 -25.31 16 14 N -0.70 -22.16 4.55 -418.07 -1.90 -24.06 16 15 C 0.17 5.84 0.40 4.68 0.00 5.84 16 16 C 0.15 6.73 4.89 86.38 0.42 7.16 16 17 N -0.73 -38.32 5.30 -343.46 -1.82 -40.14 16 18 C -0.24 -14.50 9.99 84.04 0.84 -13.66 16 19 H 0.06 3.54 7.83 -2.91 -0.02 3.51 16 20 C -0.07 -3.84 5.50 84.86 0.47 -3.37 16 21 N -0.96 -58.24 13.06 21.65 0.28 -57.96 16 22 Si 0.97 47.93 29.55 68.60 2.03 49.96 16 23 H -0.28 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.29 -14.46 7.11 99.48 0.71 -13.75 16 25 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 26 C -0.11 -3.19 5.68 31.89 0.18 -3.01 16 27 C -0.11 -2.22 6.79 31.67 0.22 -2.00 16 28 C -0.11 -2.44 6.80 31.32 0.21 -2.23 16 29 C -0.12 -3.65 5.64 31.32 0.18 -3.47 16 30 H 0.03 0.99 7.68 -2.39 -0.02 0.97 16 31 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.05 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.04 1.14 7.68 -2.39 -0.02 1.12 16 34 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 35 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.04 1.04 7.68 -2.39 -0.02 1.02 16 38 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.07 1.07 7.87 -2.39 -0.02 1.05 16 40 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 41 H 0.11 2.10 7.87 -2.39 -0.02 2.08 16 42 H 0.08 2.16 8.09 -2.39 -0.02 2.14 16 43 H 0.41 10.73 8.48 -92.71 -0.79 9.94 16 44 H 0.02 0.82 8.02 -2.39 -0.02 0.80 16 45 H 0.01 0.34 6.77 -2.38 -0.02 0.32 16 46 H 0.38 20.08 7.27 -92.71 -0.67 19.41 16 47 H 0.25 14.72 8.31 -92.71 -0.77 13.95 16 48 H 0.07 2.03 8.04 -2.38 -0.02 2.01 16 49 H 0.08 2.24 7.97 -2.39 -0.02 2.22 16 50 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 51 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 52 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 53 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 54 H 0.06 1.94 7.84 -2.39 -0.02 1.92 16 55 H 0.06 1.99 6.12 -2.39 -0.01 1.97 16 Total: -1.00 -75.50 419.09 2.19 -73.32 By element: Atomic # 1 Polarization: 42.38 SS G_CDS: -0.60 Total: 41.78 kcal Atomic # 6 Polarization: -10.27 SS G_CDS: 4.96 Total: -5.31 kcal Atomic # 7 Polarization: -118.72 SS G_CDS: -3.44 Total: -122.16 kcal Atomic # 8 Polarization: -36.83 SS G_CDS: -0.76 Total: -37.59 kcal Atomic # 14 Polarization: 47.93 SS G_CDS: 2.03 Total: 49.96 kcal Total: -75.50 2.19 -73.32 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481907607.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.289 kcal (2) G-P(sol) polarization free energy of solvation -75.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.317 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds