Wall clock time and date at job start Tue Mar 31 2020 23:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09001 * 109.47218 * 2 1 4 4 C 1.50694 * 109.47220 * 239.99656 * 2 1 3 5 5 O 1.21290 * 120.00096 * 267.28239 * 4 2 1 6 6 N 1.34775 * 120.00059 * 87.28050 * 4 2 1 7 7 C 1.46501 * 119.99776 * 353.38314 * 6 4 2 8 8 C 1.46504 * 120.00042 * 173.38686 * 6 4 2 9 9 C 1.50702 * 109.47189 * 89.99986 * 8 6 4 10 10 H 1.08003 * 119.99918 * 359.97438 * 9 8 6 11 11 C 1.37878 * 119.99696 * 180.02562 * 9 8 6 12 12 N 1.31511 * 119.99554 * 180.02562 * 11 9 8 13 13 Si 1.86793 * 120.00164 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47299 * 90.00441 * 13 11 9 15 15 H 1.48500 * 109.47129 * 210.00195 * 13 11 9 16 16 H 1.48500 * 109.47188 * 330.00476 * 13 11 9 17 17 N 1.46905 * 109.47036 * 119.99576 * 2 1 3 18 18 C 1.46840 * 111.00025 * 283.81958 * 17 2 1 19 19 C 1.53047 * 109.52264 * 185.83851 * 18 17 2 20 20 C 1.53123 * 109.27666 * 300.81789 * 19 18 17 21 21 O 1.42894 * 109.51932 * 177.55666 * 20 19 18 22 22 C 1.42904 * 113.99945 * 149.99959 * 21 20 19 23 23 C 1.54896 * 110.48480 * 93.23980 * 22 21 20 24 24 C 1.55232 * 102.58692 * 156.67728 * 23 22 21 25 25 C 1.54263 * 104.23463 * 322.08992 * 24 23 22 26 26 C 1.53878 * 106.59919 * 23.60655 * 25 24 23 27 27 C 1.53116 * 109.15943 * 57.65580 * 20 19 18 28 28 C 1.46851 * 110.99833 * 48.02799 * 17 2 1 29 29 H 1.08997 * 109.46799 * 52.50594 * 1 2 3 30 30 H 1.08995 * 109.47134 * 172.50444 * 1 2 3 31 31 H 1.09007 * 109.46836 * 292.50564 * 1 2 3 32 32 H 1.09001 * 109.46957 * 84.49750 * 7 6 4 33 33 H 1.09001 * 109.47006 * 204.49555 * 7 6 4 34 34 H 1.09000 * 109.47416 * 324.49487 * 7 6 4 35 35 H 1.09002 * 109.46548 * 209.99717 * 8 6 4 36 36 H 1.08995 * 109.47192 * 329.99476 * 8 6 4 37 37 H 0.96998 * 119.99793 * 180.02562 * 12 11 9 38 38 H 1.08997 * 109.46550 * 65.82434 * 18 17 2 39 39 H 1.09000 * 109.45723 * 305.84276 * 18 17 2 40 40 H 1.08996 * 109.50367 * 180.87584 * 19 18 17 41 41 H 1.08998 * 109.53268 * 60.78146 * 19 18 17 42 42 H 1.08995 * 109.52426 * 297.68817 * 20 19 18 43 43 H 1.09003 * 110.43072 * 330.70732 * 22 21 20 44 44 H 1.08997 * 110.75962 * 275.07533 * 23 22 21 45 45 H 1.09001 * 110.75614 * 38.44352 * 23 22 21 46 46 H 1.09000 * 110.47218 * 203.39474 * 24 23 22 47 47 H 1.09004 * 110.58004 * 80.83106 * 24 23 22 48 48 H 1.09003 * 110.02957 * 264.32294 * 25 24 23 49 49 H 1.08999 * 110.07431 * 142.91749 * 25 24 23 50 50 H 1.09004 * 110.03179 * 240.71727 * 26 25 24 51 51 H 1.09001 * 110.07392 * 119.30967 * 26 25 24 52 52 H 1.09003 * 109.50904 * 62.28034 * 27 20 19 53 53 H 1.08998 * 109.50645 * 182.40438 * 27 20 19 54 54 H 1.09005 * 109.46433 * 294.17463 * 28 17 2 55 55 H 1.08997 * 109.46219 * 54.14098 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.2815 -1.8967 -1.1865 6 7 2.2048 -0.0277 -2.3795 7 6 1.7688 1.3676 -2.4750 8 6 2.8281 -0.6811 -3.5332 9 6 1.7636 -1.3350 -4.3760 10 1 0.7265 -1.2708 -4.0815 11 6 2.1139 -2.0161 -5.5225 12 7 1.1849 -2.5864 -6.2582 13 14 3.9077 -2.1278 -6.0314 14 1 4.5203 -3.3364 -5.4240 15 1 3.9978 -2.2176 -7.5110 16 1 4.6311 -0.9181 -5.5640 17 7 2.0197 -0.6924 1.1995 18 6 1.8864 0.1579 2.3893 19 6 2.5366 -0.5354 3.5888 20 6 1.8532 -1.8853 3.8241 21 8 2.4937 -2.5622 4.9074 22 6 1.6267 -3.4232 5.6486 23 6 1.6949 -4.8682 5.0949 24 6 1.2336 -5.7179 6.3094 25 6 1.8607 -5.0097 7.5279 26 6 2.1107 -3.5506 7.1077 27 6 1.9643 -2.7329 2.5538 28 6 1.3307 -1.9760 1.3843 29 1 -0.3633 0.6255 -0.8154 30 1 -0.3633 -1.0188 -0.1341 31 1 -0.3633 0.3934 0.9495 32 1 2.5495 2.0198 -2.0834 33 1 1.5762 1.6175 -3.5184 34 1 0.8564 1.5038 -1.8944 35 1 3.3578 0.0622 -4.1292 36 1 3.5322 -1.4372 -3.1860 37 1 1.4313 -3.0659 -7.0646 38 1 0.8301 0.3286 2.5972 39 1 2.3803 1.1129 2.2102 40 1 2.4238 0.0890 4.4751 41 1 3.5961 -0.6939 3.3878 42 1 0.8025 -1.7245 4.0652 43 1 0.6028 -3.0507 5.6173 44 1 1.0140 -4.9918 4.2528 45 1 2.7150 -5.1246 4.8090 46 1 1.6093 -6.7377 6.2258 47 1 0.1463 -5.7180 6.3861 48 1 2.8032 -5.4884 7.7938 49 1 1.1741 -5.0422 8.3738 50 1 3.1745 -3.3213 7.1697 51 1 1.5453 -2.8745 7.7490 52 1 3.0146 -2.9261 2.3358 53 1 1.4425 -3.6786 2.7006 54 1 0.2769 -1.7953 1.5970 55 1 1.4207 -2.5707 0.4753 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195322349.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:12 Heat of formation + Delta-G solvation = -103.903219 kcal Electronic energy + Delta-G solvation = -30929.009497 eV Core-core repulsion = 26964.686230 eV Total energy + Delta-G solvation = -3964.323267 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.41644 -40.28363 -39.01118 -37.04188 -36.52894 -34.82282 -34.12673 -31.87015 -30.97644 -29.83865 -29.59198 -28.40684 -27.47778 -26.03496 -24.57111 -24.17269 -22.87323 -21.78263 -21.18797 -20.52817 -19.85806 -19.12929 -18.10131 -17.93496 -17.41136 -16.90676 -16.50018 -16.26419 -15.91656 -15.85406 -15.65437 -15.34671 -15.19341 -14.69945 -14.60000 -14.34217 -14.26026 -14.09128 -13.79512 -13.68183 -13.48571 -13.34273 -13.21824 -13.10983 -13.07202 -12.87952 -12.62649 -12.49400 -12.39256 -12.19322 -12.09911 -12.03870 -12.01198 -11.88638 -11.74695 -11.67772 -11.51861 -11.34039 -11.30814 -10.83429 -10.52537 -10.20097 -9.35730 -9.17940 -8.34210 -6.38416 1.31460 1.35919 1.44092 1.82541 2.23390 2.30484 2.65625 3.00268 3.03290 3.64265 3.65489 3.69416 3.79607 3.87212 3.98053 4.02976 4.09029 4.15963 4.28030 4.28743 4.34104 4.35785 4.45898 4.50799 4.53109 4.58347 4.62252 4.64090 4.68958 4.71457 4.76289 4.82271 4.83383 4.92392 4.93324 4.96000 4.96931 5.02522 5.05313 5.09760 5.16790 5.18113 5.21331 5.22413 5.27150 5.37377 5.43968 5.46297 5.66915 5.99930 6.20519 6.25763 6.40847 6.62403 6.76253 7.22613 7.50014 8.82828 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.016666 B = 0.002401 C = 0.002220 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1679.642503 B =11657.708945 C =12608.921614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.078 3.922 3 H 0.131 0.869 4 C 0.505 3.495 5 O -0.579 6.579 6 N -0.610 5.610 7 C 0.074 3.926 8 C 0.226 3.774 9 C -0.530 4.530 10 H 0.027 0.973 11 C 0.009 3.991 12 N -0.946 5.946 13 Si 0.948 3.052 14 H -0.279 1.279 15 H -0.274 1.274 16 H -0.237 1.237 17 N -0.537 5.537 18 C 0.059 3.941 19 C -0.107 4.107 20 C 0.096 3.904 21 O -0.387 6.387 22 C 0.078 3.922 23 C -0.151 4.151 24 C -0.122 4.122 25 C -0.120 4.120 26 C -0.120 4.120 27 C -0.127 4.127 28 C 0.053 3.947 29 H 0.076 0.924 30 H 0.039 0.961 31 H 0.096 0.904 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.050 0.950 36 H 0.013 0.987 37 H 0.268 0.732 38 H 0.054 0.946 39 H 0.100 0.900 40 H 0.094 0.906 41 H 0.061 0.939 42 H 0.070 0.930 43 H 0.074 0.926 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.066 0.934 49 H 0.080 0.920 50 H 0.065 0.935 51 H 0.080 0.920 52 H 0.050 0.950 53 H 0.066 0.934 54 H 0.043 0.957 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.802 7.151 28.312 29.212 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.033 4.033 3 H 0.149 0.851 4 C 0.293 3.707 5 O -0.458 6.458 6 N -0.342 5.342 7 C -0.067 4.067 8 C 0.103 3.897 9 C -0.569 4.569 10 H 0.046 0.954 11 C -0.189 4.189 12 N -0.587 5.587 13 Si 0.770 3.230 14 H -0.205 1.205 15 H -0.199 1.199 16 H -0.161 1.161 17 N -0.262 5.262 18 C -0.068 4.068 19 C -0.145 4.145 20 C 0.038 3.962 21 O -0.306 6.306 22 C 0.020 3.980 23 C -0.189 4.189 24 C -0.160 4.160 25 C -0.158 4.158 26 C -0.158 4.158 27 C -0.165 4.165 28 C -0.074 4.074 29 H 0.095 0.905 30 H 0.058 0.942 31 H 0.115 0.885 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.031 0.969 37 H 0.077 0.923 38 H 0.072 0.928 39 H 0.118 0.882 40 H 0.113 0.887 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.092 0.908 44 H 0.081 0.919 45 H 0.079 0.921 46 H 0.089 0.911 47 H 0.093 0.907 48 H 0.085 0.915 49 H 0.099 0.901 50 H 0.084 0.916 51 H 0.099 0.901 52 H 0.069 0.931 53 H 0.085 0.915 54 H 0.061 0.939 55 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.005 6.400 28.156 28.874 hybrid contribution -0.557 -0.802 -1.173 1.526 sum -0.552 5.599 26.983 27.563 Atomic orbital electron populations 1.22328 0.93920 1.02332 1.04511 1.21598 0.95170 0.98793 0.87757 0.85149 1.21241 0.77367 0.87016 0.85091 1.90571 1.52588 1.17571 1.85113 1.47950 1.60185 1.14139 1.11901 1.22027 1.00896 0.80046 1.03770 1.19307 0.92817 0.93281 0.84279 1.21546 0.93860 1.33890 1.07591 0.95439 1.25859 1.02597 0.94257 0.96177 1.70050 1.35510 1.36582 1.16515 0.85719 0.79416 0.80085 0.77744 1.20490 1.19921 1.16054 1.61733 1.57686 1.04249 1.02498 1.22208 1.00227 0.96336 0.88012 1.21615 1.00462 0.94376 0.98008 1.22232 0.96439 0.92090 0.85437 1.87931 1.37905 1.60461 1.44306 1.23258 0.93449 0.89445 0.91837 1.23116 1.01400 0.95878 0.98470 1.22349 1.00988 0.98902 0.93758 1.22088 1.01414 0.94130 0.98119 1.22193 1.02173 0.97790 0.93652 1.22041 1.01129 0.98704 0.94649 1.22170 0.95197 0.91020 0.99042 0.90476 0.94154 0.88515 0.89978 0.91257 0.89712 0.93167 0.96878 0.92343 0.92791 0.88211 0.88731 0.91998 0.91175 0.90798 0.91905 0.92109 0.91121 0.90651 0.91501 0.90134 0.91578 0.90118 0.93076 0.91520 0.93911 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 7.96 71.98 0.57 -3.55 16 2 C 0.08 2.17 1.89 44.17 0.08 2.26 16 3 H 0.13 2.73 6.89 -2.39 -0.02 2.71 16 4 C 0.50 20.71 6.80 87.66 0.60 21.31 16 5 O -0.58 -29.85 13.73 -3.06 -0.04 -29.90 16 6 N -0.61 -24.93 2.86 -851.12 -2.43 -27.36 16 7 C 0.07 2.08 9.60 127.77 1.23 3.30 16 8 C 0.23 11.21 4.16 85.63 0.36 11.57 16 9 C -0.53 -31.72 9.94 25.60 0.25 -31.47 16 10 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 11 C 0.01 0.53 5.47 84.66 0.46 0.99 16 12 N -0.95 -60.73 13.96 21.45 0.30 -60.43 16 13 Si 0.95 45.43 27.47 68.60 1.88 47.31 16 14 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 15 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 16 H -0.24 -10.20 6.54 99.48 0.65 -9.55 16 17 N -0.54 -14.71 4.46 -875.49 -3.90 -18.61 16 18 C 0.06 1.08 5.22 86.33 0.45 1.53 16 19 C -0.11 -2.01 5.75 30.65 0.18 -1.84 16 20 C 0.10 2.01 2.68 30.67 0.08 2.09 16 21 O -0.39 -8.64 9.71 -148.98 -1.45 -10.09 16 22 C 0.08 1.37 3.31 31.67 0.10 1.47 16 23 C -0.15 -2.75 5.97 32.01 0.19 -2.56 16 24 C -0.12 -1.67 6.84 31.79 0.22 -1.45 16 25 C -0.12 -1.45 6.80 31.32 0.21 -1.23 16 26 C -0.12 -1.73 6.56 31.32 0.21 -1.53 16 27 C -0.13 -3.41 5.55 30.65 0.17 -3.24 16 28 C 0.05 1.60 4.25 86.33 0.37 1.97 16 29 H 0.08 1.73 6.40 -2.39 -0.02 1.72 16 30 H 0.04 1.20 6.92 -2.39 -0.02 1.18 16 31 H 0.10 1.65 6.85 -2.38 -0.02 1.63 16 32 H 0.08 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.07 2.06 8.03 -2.39 -0.02 2.04 16 34 H 0.08 1.90 5.40 -2.39 -0.01 1.89 16 35 H 0.05 2.28 7.13 -2.39 -0.02 2.26 16 36 H 0.01 0.71 6.95 -2.39 -0.02 0.69 16 37 H 0.27 15.96 8.31 -92.71 -0.77 15.19 16 38 H 0.05 0.80 6.98 -2.39 -0.02 0.79 16 39 H 0.10 1.45 7.96 -2.39 -0.02 1.44 16 40 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.07 1.26 7.39 -2.39 -0.02 1.24 16 43 H 0.07 1.14 7.42 -2.39 -0.02 1.13 16 44 H 0.06 1.19 7.14 -2.39 -0.02 1.17 16 45 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 46 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 47 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 48 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 49 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.07 1.09 8.07 -2.39 -0.02 1.07 16 51 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 52 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 53 H 0.07 1.72 6.58 -2.39 -0.02 1.70 16 54 H 0.04 1.13 6.74 -2.38 -0.02 1.11 16 55 H 0.07 2.64 5.54 -2.39 -0.01 2.62 16 Total: -1.00 -79.69 407.87 0.89 -78.80 By element: Atomic # 1 Polarization: 19.85 SS G_CDS: 0.79 Total: 20.65 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: 5.73 Total: -0.38 kcal Atomic # 7 Polarization: -100.37 SS G_CDS: -6.03 Total: -106.40 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -1.49 Total: -39.98 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 1.88 Total: 47.31 kcal Total: -79.69 0.89 -78.80 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195322349.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.099 kcal (2) G-P(sol) polarization free energy of solvation -79.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.903 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds