Wall clock time and date at job start Tue Mar 31 2020 23:51:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.47077 * 2 1 4 4 C 1.50698 * 109.47238 * 239.99820 * 2 1 3 5 5 O 1.21285 * 119.99842 * 270.42950 * 4 2 1 6 6 N 1.34777 * 119.99797 * 90.42947 * 4 2 1 7 7 C 1.46499 * 119.99954 * 354.78078 * 6 4 2 8 8 C 1.46506 * 119.99521 * 174.77964 * 6 4 2 9 9 C 1.50698 * 109.46822 * 90.00206 * 8 6 4 10 10 H 1.07997 * 120.00482 * 359.97438 * 9 8 6 11 11 C 1.37878 * 120.00067 * 179.97438 * 9 8 6 12 12 N 1.31515 * 119.99467 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00252 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47339 * 359.97438 * 13 11 9 15 15 H 1.48499 * 109.47107 * 120.00006 * 13 11 9 16 16 H 1.48501 * 109.47141 * 239.99729 * 13 11 9 17 17 N 1.46904 * 109.46900 * 119.99467 * 2 1 3 18 18 C 1.46845 * 110.99718 * 178.09049 * 17 2 1 19 19 C 1.53033 * 109.52259 * 185.84143 * 18 17 2 20 20 C 1.53112 * 109.28220 * 300.82264 * 19 18 17 21 21 C 1.53126 * 109.16145 * 57.65231 * 20 19 18 22 22 H 1.09001 * 109.49765 * 62.28993 * 21 20 19 23 23 C 1.53002 * 109.50593 * 182.40519 * 21 20 19 24 24 H 1.08992 * 109.47885 * 179.97438 * 23 21 20 25 25 C 1.53093 * 109.47876 * 300.00139 * 23 21 20 26 26 C 1.53174 * 109.15833 * 177.58952 * 25 23 21 27 27 C 1.53180 * 109.04073 * 303.01857 * 26 25 23 28 28 C 1.53096 * 109.16149 * 56.98305 * 27 26 25 29 29 O 1.42906 * 109.41494 * 302.39146 * 28 27 26 30 30 C 1.46838 * 111.00439 * 302.30271 * 17 2 1 31 31 H 1.09002 * 109.47179 * 305.83950 * 1 2 3 32 32 H 1.09002 * 109.47382 * 65.84416 * 1 2 3 33 33 H 1.09005 * 109.47216 * 185.84504 * 1 2 3 34 34 H 1.09005 * 109.46895 * 94.51759 * 7 6 4 35 35 H 1.08998 * 109.46647 * 214.51230 * 7 6 4 36 36 H 1.08993 * 109.47218 * 334.50846 * 7 6 4 37 37 H 1.08994 * 109.46733 * 210.00125 * 8 6 4 38 38 H 1.08998 * 109.46939 * 330.00238 * 8 6 4 39 39 H 0.97006 * 119.99661 * 180.02562 * 12 11 9 40 40 H 1.08995 * 109.46156 * 65.82917 * 18 17 2 41 41 H 1.09005 * 109.46678 * 305.85768 * 18 17 2 42 42 H 1.09003 * 109.50900 * 180.87739 * 19 18 17 43 43 H 1.09007 * 109.50622 * 60.76591 * 19 18 17 44 44 H 1.08996 * 109.52351 * 297.74919 * 20 19 18 45 45 H 1.08999 * 109.52880 * 177.55937 * 20 19 18 46 46 H 1.08995 * 109.52365 * 297.49614 * 25 23 21 47 47 H 1.09002 * 109.52362 * 57.62369 * 25 23 21 48 48 H 1.09002 * 109.54368 * 62.88736 * 26 25 23 49 49 H 1.09001 * 109.54509 * 183.06659 * 26 25 23 50 50 H 1.09000 * 109.52676 * 176.88377 * 27 26 25 51 51 H 1.08996 * 109.52286 * 297.01394 * 27 26 25 52 52 H 1.08995 * 109.48148 * 62.37223 * 28 27 26 53 53 H 1.08997 * 109.47957 * 182.41002 * 28 27 26 54 54 H 1.09001 * 109.46129 * 54.14326 * 30 17 2 55 55 H 1.08997 * 109.46157 * 294.17817 * 30 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 8 2.2271 -1.9072 -1.2026 6 7 2.2652 -0.0158 -2.3617 7 6 1.9227 1.4068 -2.4314 8 6 2.8610 -0.6836 -3.5217 9 6 1.7681 -1.2480 -4.3924 10 1 0.7333 -1.1223 -4.1098 11 6 2.0892 -1.9250 -5.5498 12 7 3.3492 -2.0776 -5.8942 13 14 0.7345 -2.6239 -6.6295 14 1 -0.5872 -2.3185 -6.0254 15 1 0.8144 -2.0140 -7.9810 16 1 0.8995 -4.0956 -6.7401 17 7 2.0196 -0.6924 1.1995 18 6 3.4868 -0.7517 1.2108 19 6 3.9552 -1.6024 2.3936 20 6 3.4407 -0.9839 3.6963 21 6 1.9135 -0.8891 3.6389 22 1 1.4897 -1.8899 3.5566 23 6 1.3951 -0.2171 4.9120 24 1 0.3081 -0.1494 4.8704 25 6 1.8090 -1.0454 6.1312 26 6 1.3388 -0.3353 7.4044 27 6 1.9279 1.0784 7.4348 28 6 1.5094 1.8245 6.1651 29 8 1.9508 1.0952 5.0182 30 6 1.5044 -0.0591 2.4200 31 1 -0.3634 0.6017 0.8331 32 1 -0.3634 0.4205 -0.9377 33 1 -0.3634 -1.0224 0.1047 34 1 2.8001 2.0043 -2.1838 35 1 1.5895 1.6513 -3.4400 36 1 1.1237 1.6233 -1.7223 37 1 3.4464 0.0358 -4.0940 38 1 3.5091 -1.4917 -3.1825 39 1 3.5751 -2.5536 -6.7087 40 1 3.8903 0.2564 1.3063 41 1 3.8396 -1.1974 0.2807 42 1 5.0447 -1.6334 2.4109 43 1 3.5635 -2.6145 2.2917 44 1 3.8633 0.0134 3.8179 45 1 3.7354 -1.6103 4.5383 46 1 1.3501 -2.0323 6.0739 47 1 2.8939 -1.1486 6.1502 48 1 0.2503 -0.2769 7.4085 49 1 1.6774 -0.8916 8.2784 50 1 1.5539 1.6102 8.3097 51 1 3.0152 1.0189 7.4818 52 1 0.4239 1.9190 6.1401 53 1 1.9610 2.8165 6.1610 54 1 0.4171 -0.0016 2.3681 55 1 1.9171 0.9457 2.5097 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595788291.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:51:07 Heat of formation + Delta-G solvation = -110.204951 kcal Electronic energy + Delta-G solvation = -31405.573595 eV Core-core repulsion = 27440.977064 eV Total energy + Delta-G solvation = -3964.596531 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -41.42890 -40.56405 -38.98479 -36.55835 -35.62209 -34.66025 -34.47439 -33.34443 -31.17082 -30.20415 -29.61847 -27.44324 -26.35885 -25.80786 -25.24620 -24.44203 -22.81531 -22.57271 -21.07876 -20.43649 -19.79905 -18.68534 -18.06998 -17.60977 -17.06818 -16.88014 -16.53173 -16.38358 -15.81829 -15.67281 -15.59977 -15.39114 -15.05512 -14.76678 -14.61118 -14.46148 -14.30673 -14.09466 -13.88989 -13.74427 -13.50369 -13.47668 -13.20848 -13.04147 -12.91838 -12.83188 -12.66197 -12.60648 -12.45056 -12.29836 -12.21240 -12.13198 -12.07265 -11.78253 -11.67321 -11.51926 -11.30687 -11.14859 -10.94611 -10.65643 -10.41668 -10.23225 -9.41706 -9.21932 -8.22738 -6.37249 1.35158 1.38073 1.49947 1.82339 2.22326 2.41214 2.87931 2.96013 3.06468 3.59811 3.70376 3.79616 3.98196 4.00068 4.03851 4.05798 4.10996 4.14303 4.19243 4.34938 4.35699 4.36417 4.47692 4.48599 4.60711 4.63842 4.65627 4.69034 4.73644 4.80269 4.82179 4.90170 4.91416 4.92329 4.98627 5.01351 5.01573 5.03766 5.11822 5.15953 5.18149 5.20296 5.23807 5.27910 5.33048 5.47749 5.54065 5.56124 5.82694 6.00446 6.06090 6.18603 6.41803 6.70443 6.80161 7.28653 7.52107 8.84548 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025854 B = 0.002334 C = 0.002299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.761067 B =11992.570759 C =12178.484800 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.077 3.923 3 H 0.076 0.924 4 C 0.503 3.497 5 O -0.577 6.577 6 N -0.614 5.614 7 C 0.077 3.923 8 C 0.262 3.738 9 C -0.537 4.537 10 H 0.052 0.948 11 C 0.005 3.995 12 N -0.929 5.929 13 Si 0.969 3.031 14 H -0.267 1.267 15 H -0.268 1.268 16 H -0.282 1.282 17 N -0.531 5.531 18 C 0.057 3.943 19 C -0.110 4.110 20 C -0.100 4.100 21 C -0.072 4.072 22 H 0.086 0.914 23 C 0.103 3.897 24 H 0.064 0.936 25 C -0.151 4.151 26 C -0.122 4.122 27 C -0.154 4.154 28 C 0.055 3.945 29 O -0.393 6.393 30 C 0.067 3.933 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.053 0.947 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.092 0.908 37 H 0.023 0.977 38 H -0.006 1.006 39 H 0.267 0.733 40 H 0.034 0.966 41 H 0.039 0.961 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.063 0.937 45 H 0.077 0.923 46 H 0.078 0.922 47 H 0.070 0.930 48 H 0.067 0.933 49 H 0.073 0.927 50 H 0.085 0.915 51 H 0.063 0.937 52 H 0.055 0.945 53 H 0.098 0.902 54 H 0.087 0.913 55 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.499 10.735 28.399 30.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.035 4.035 3 H 0.093 0.907 4 C 0.291 3.709 5 O -0.455 6.455 6 N -0.347 5.347 7 C -0.065 4.065 8 C 0.141 3.859 9 C -0.576 4.576 10 H 0.070 0.930 11 C -0.194 4.194 12 N -0.569 5.569 13 Si 0.793 3.207 14 H -0.191 1.191 15 H -0.193 1.193 16 H -0.208 1.208 17 N -0.257 5.257 18 C -0.070 4.070 19 C -0.148 4.148 20 C -0.138 4.138 21 C -0.091 4.091 22 H 0.104 0.896 23 C 0.044 3.956 24 H 0.082 0.918 25 C -0.188 4.188 26 C -0.159 4.159 27 C -0.191 4.191 28 C -0.021 4.021 29 O -0.312 6.312 30 C -0.060 4.060 31 H 0.117 0.883 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.111 0.889 37 H 0.041 0.959 38 H 0.012 0.988 39 H 0.076 0.924 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.091 0.909 43 H 0.075 0.925 44 H 0.082 0.918 45 H 0.095 0.905 46 H 0.097 0.903 47 H 0.088 0.912 48 H 0.086 0.914 49 H 0.091 0.909 50 H 0.103 0.897 51 H 0.082 0.918 52 H 0.074 0.926 53 H 0.116 0.884 54 H 0.106 0.894 55 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -5.323 9.663 28.105 30.193 hybrid contribution 0.088 -0.025 -1.046 1.050 sum -5.235 9.637 27.059 29.197 Atomic orbital electron populations 1.21797 0.90563 1.03175 1.03662 1.21590 0.98349 0.95699 0.87848 0.90664 1.21094 0.77553 0.87311 0.84977 1.90632 1.53113 1.16926 1.84869 1.48225 1.61416 1.11675 1.13368 1.21948 1.01318 0.79505 1.03771 1.18715 0.92972 0.91676 0.82548 1.21695 0.93312 1.35820 1.06777 0.92988 1.25888 0.98174 0.96118 0.99196 1.70064 1.18505 1.42904 1.25466 0.85347 0.78946 0.77924 0.78461 1.19116 1.19270 1.20792 1.61626 1.09152 1.53711 1.01198 1.22023 0.87419 0.98483 0.99121 1.21521 1.00357 0.98998 0.93908 1.21522 0.94799 1.01053 0.96397 1.21217 0.96521 0.99138 0.92215 0.89602 1.22025 0.96809 0.82874 0.93844 0.91796 1.22235 1.02355 0.99592 0.94645 1.21596 1.00860 0.95836 0.97624 1.22167 1.01491 0.96687 0.98787 1.22693 0.99258 0.95371 0.84801 1.87933 1.70596 1.27316 1.45376 1.22149 1.00529 0.95722 0.87582 0.88292 0.91296 0.92740 0.91619 0.91276 0.88919 0.95897 0.98810 0.92426 0.94794 0.94194 0.90902 0.92462 0.91823 0.90481 0.90346 0.91162 0.91390 0.90869 0.89670 0.91832 0.92650 0.88403 0.89449 0.94048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.52 8.43 71.98 0.61 -2.92 16 2 C 0.08 2.42 1.62 44.17 0.07 2.50 16 3 H 0.08 2.05 6.77 -2.39 -0.02 2.03 16 4 C 0.50 22.28 5.63 87.66 0.49 22.77 16 5 O -0.58 -31.79 15.28 -3.04 -0.05 -31.84 16 6 N -0.61 -27.51 2.86 -851.14 -2.43 -29.94 16 7 C 0.08 2.44 9.87 127.77 1.26 3.70 16 8 C 0.26 14.74 5.14 85.63 0.44 15.18 16 9 C -0.54 -31.99 9.39 25.60 0.24 -31.75 16 10 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 11 C 0.00 0.29 5.46 84.65 0.46 0.75 16 12 N -0.93 -57.58 13.29 21.45 0.28 -57.29 16 13 Si 0.97 46.11 29.54 68.60 2.03 48.13 16 14 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 15 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 16 H -0.28 -13.32 7.11 99.48 0.71 -12.61 16 17 N -0.53 -16.24 4.26 -875.54 -3.73 -19.97 16 18 C 0.06 1.83 5.14 86.32 0.44 2.28 16 19 C -0.11 -2.88 6.09 30.64 0.19 -2.69 16 20 C -0.10 -2.06 4.74 30.67 0.15 -1.92 16 21 C -0.07 -1.42 2.24 -10.74 -0.02 -1.45 16 22 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 23 C 0.10 1.60 2.38 30.63 0.07 1.67 16 24 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 25 C -0.15 -1.95 5.13 30.68 0.16 -1.79 16 26 C -0.12 -1.24 6.03 30.71 0.19 -1.06 16 27 C -0.15 -1.54 6.14 30.69 0.19 -1.35 16 28 C 0.06 0.66 6.84 72.01 0.49 1.15 16 29 O -0.39 -6.82 9.00 -148.98 -1.34 -8.16 16 30 C 0.07 1.52 4.32 86.33 0.37 1.89 16 31 H 0.10 1.85 6.58 -2.39 -0.02 1.83 16 32 H 0.07 1.77 7.21 -2.39 -0.02 1.75 16 33 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 34 H 0.07 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.07 2.26 8.11 -2.39 -0.02 2.24 16 36 H 0.09 2.30 5.39 -2.39 -0.01 2.28 16 37 H 0.02 1.30 8.07 -2.39 -0.02 1.28 16 38 H -0.01 -0.40 7.50 -2.39 -0.02 -0.42 16 39 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 40 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.04 1.62 6.19 -2.38 -0.01 1.60 16 42 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 44 H 0.06 1.38 7.62 -2.39 -0.02 1.36 16 45 H 0.08 1.36 6.52 -2.39 -0.02 1.34 16 46 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.07 1.00 6.37 -2.39 -0.02 0.98 16 48 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 49 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 50 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 51 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 52 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 53 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 54 H 0.09 1.75 6.07 -2.39 -0.01 1.74 16 55 H 0.04 0.95 7.65 -2.39 -0.02 0.93 16 Total: -1.00 -76.89 410.32 1.40 -75.49 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 0.84 Total: 16.61 kcal Atomic # 6 Polarization: 1.17 SS G_CDS: 5.80 Total: 6.97 kcal Atomic # 7 Polarization: -101.32 SS G_CDS: -5.88 Total: -107.20 kcal Atomic # 8 Polarization: -38.61 SS G_CDS: -1.39 Total: -40.00 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -76.89 1.40 -75.49 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595788291.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.711 kcal (2) G-P(sol) polarization free energy of solvation -76.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.601 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.494 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds