Wall clock time and date at job start Tue Mar 31 2020 23:49:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46692 * 2 1 4 4 C 1.50701 * 109.47155 * 240.00439 * 2 1 3 5 5 O 1.21280 * 119.99556 * 250.75075 * 4 2 1 6 6 N 1.34770 * 120.00388 * 70.74085 * 4 2 1 7 7 C 1.46507 * 119.99975 * 5.12751 * 6 4 2 8 8 C 1.46500 * 120.00012 * 185.12136 * 6 4 2 9 9 C 1.50701 * 109.47172 * 90.00702 * 8 6 4 10 10 H 1.07992 * 119.99579 * 359.97438 * 9 8 6 11 11 C 1.37873 * 119.99694 * 180.02562 * 9 8 6 12 12 N 1.31512 * 120.00436 * 359.97438 * 11 9 8 13 13 Si 1.86800 * 119.99619 * 179.97438 * 11 9 8 14 14 H 1.48494 * 109.47282 * 359.97438 * 13 11 9 15 15 H 1.48506 * 109.47163 * 119.99698 * 13 11 9 16 16 H 1.48496 * 109.47338 * 239.99412 * 13 11 9 17 17 N 1.46897 * 109.47171 * 119.99838 * 2 1 3 18 18 C 1.46849 * 111.00119 * 294.99895 * 17 2 1 19 19 C 1.53040 * 109.52330 * 185.84206 * 18 17 2 20 20 C 1.53124 * 109.27660 * 300.82231 * 19 18 17 21 21 C 1.52999 * 109.51929 * 177.55916 * 20 19 18 22 22 H 1.08998 * 109.48247 * 59.98101 * 21 20 19 23 23 C 1.53091 * 109.47583 * 179.97438 * 21 20 19 24 24 C 1.53178 * 109.21171 * 177.56137 * 23 21 20 25 25 C 1.53182 * 109.03380 * 303.11064 * 24 23 21 26 26 C 1.53092 * 109.21079 * 56.88668 * 25 24 23 27 27 O 1.42898 * 109.48129 * 299.94304 * 21 20 19 28 28 C 1.53113 * 109.15848 * 57.65251 * 20 19 18 29 29 C 1.46843 * 111.00047 * 59.21324 * 17 2 1 30 30 H 1.09002 * 109.47417 * 308.16616 * 1 2 3 31 31 H 1.08997 * 109.47325 * 68.16893 * 1 2 3 32 32 H 1.09001 * 109.46734 * 188.16614 * 1 2 3 33 33 H 1.08995 * 109.47258 * 95.03197 * 7 6 4 34 34 H 1.09002 * 109.46632 * 215.03332 * 7 6 4 35 35 H 1.08997 * 109.46722 * 335.02370 * 7 6 4 36 36 H 1.09008 * 109.46844 * 210.00290 * 8 6 4 37 37 H 1.08993 * 109.47027 * 330.00037 * 8 6 4 38 38 H 0.97001 * 119.99928 * 180.02562 * 12 11 9 39 39 H 1.08995 * 109.45875 * 65.82381 * 18 17 2 40 40 H 1.08998 * 109.46129 * 305.85778 * 18 17 2 41 41 H 1.09003 * 109.49987 * 180.88153 * 19 18 17 42 42 H 1.08996 * 109.53460 * 60.78087 * 19 18 17 43 43 H 1.09004 * 109.51885 * 297.68681 * 20 19 18 44 44 H 1.08998 * 109.52492 * 297.49623 * 23 21 20 45 45 H 1.08992 * 109.52602 * 57.62833 * 23 21 20 46 46 H 1.09000 * 109.54504 * 62.92231 * 24 23 21 47 47 H 1.09008 * 109.54223 * 183.18095 * 24 23 21 48 48 H 1.08997 * 109.47480 * 296.98217 * 25 24 23 49 49 H 1.08998 * 109.58075 * 176.85609 * 25 24 23 50 50 H 1.09007 * 109.48108 * 182.43812 * 26 25 24 51 51 H 1.09005 * 109.49104 * 62.41793 * 26 25 24 52 52 H 1.09005 * 109.50245 * 62.29131 * 28 20 19 53 53 H 1.09004 * 109.50308 * 182.39844 * 28 20 19 54 54 H 1.08997 * 109.46303 * 294.17306 * 29 17 2 55 55 H 1.09002 * 109.46468 * 54.14343 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 8 2.5610 -1.7972 -1.1299 6 7 1.8941 -0.1379 -2.4428 7 6 1.3585 1.2212 -2.5543 8 6 2.2794 -0.8747 -3.6490 9 6 1.0956 -1.6539 -4.1613 10 1 0.1509 -1.6055 -3.6402 11 6 1.2190 -2.4294 -5.2946 12 7 2.3696 -2.4887 -5.9288 13 14 -0.2482 -3.3959 -5.9292 14 1 -1.4163 -3.1614 -5.0428 15 1 -0.5752 -2.9510 -7.3078 16 1 0.0806 -4.8439 -5.9413 17 7 2.0197 -0.6924 1.1994 18 6 1.6489 0.0390 2.4176 19 6 2.2967 -0.6293 3.6325 20 6 1.8224 -2.0824 3.7229 21 6 2.5135 -2.7734 4.9001 22 1 2.2649 -2.2522 5.8245 23 6 2.0382 -4.2259 4.9899 24 6 2.7787 -4.9289 6.1317 25 6 4.2874 -4.8236 5.8883 26 6 4.6758 -3.3480 5.7637 27 8 3.9287 -2.7474 4.7039 28 6 2.1778 -2.8087 2.4227 29 6 1.5336 -2.0774 1.2429 30 1 -0.3634 0.6350 0.8080 31 1 -0.3634 0.3821 -0.9539 32 1 -0.3633 -1.0173 0.1460 33 1 2.1821 1.9336 -2.6006 34 1 0.7572 1.3015 -3.4599 35 1 0.7376 1.4394 -1.6854 36 1 2.6103 -0.1719 -4.4138 37 1 3.0914 -1.5617 -3.4111 38 1 2.4562 -3.0340 -6.7263 39 1 0.5650 0.0281 2.5320 40 1 1.9956 1.0696 2.3421 41 1 2.0085 -0.0954 4.5381 42 1 3.3811 -0.6064 3.5260 43 1 0.7426 -2.1046 3.8702 44 1 0.9658 -4.2470 5.1838 45 1 2.2486 -4.7368 4.0504 46 1 2.5286 -4.4496 7.0782 47 1 2.4860 -5.9784 6.1645 48 1 4.5443 -5.3469 4.9673 49 1 4.8244 -5.2723 6.7239 50 1 5.7413 -3.2696 5.5473 51 1 4.4562 -2.8339 6.6995 52 1 3.2605 -2.8202 2.2965 53 1 1.8049 -3.8322 2.4640 54 1 0.4502 -2.0784 1.3628 55 1 1.7965 -2.5839 0.3142 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595790903.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:51 Heat of formation + Delta-G solvation = -101.123877 kcal Electronic energy + Delta-G solvation = -31481.816325 eV Core-core repulsion = 27517.613579 eV Total energy + Delta-G solvation = -3964.202746 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.49691 -40.58228 -38.99882 -36.59389 -35.77765 -34.69613 -34.51743 -32.34801 -31.64189 -30.27859 -29.31304 -27.51232 -26.66169 -25.74104 -24.96922 -24.17418 -23.70635 -22.28958 -20.96877 -20.34278 -19.85105 -18.67847 -17.86574 -17.34908 -17.09260 -16.94262 -16.58053 -16.18978 -15.98416 -15.66654 -15.51736 -15.46690 -15.29229 -14.81279 -14.60347 -14.44193 -14.28684 -13.93166 -13.87381 -13.55217 -13.50652 -13.44587 -13.22394 -13.17565 -12.97962 -12.76116 -12.61701 -12.57421 -12.38513 -12.32520 -12.17491 -12.13337 -11.94392 -11.73137 -11.66336 -11.47749 -11.36023 -11.19522 -10.91045 -10.65744 -10.23472 -10.11086 -9.37657 -9.08146 -8.22441 -6.37773 1.35021 1.37599 1.49243 1.86636 2.26817 2.41729 2.93929 3.06551 3.07808 3.65203 3.70759 3.79322 3.95770 3.98930 4.01940 4.06085 4.11686 4.19384 4.27242 4.32590 4.38376 4.44023 4.47310 4.54571 4.63276 4.68077 4.70249 4.71676 4.73395 4.78204 4.81888 4.85376 4.92658 4.94398 4.98587 5.01533 5.04786 5.11168 5.16212 5.18978 5.22385 5.23749 5.24941 5.34421 5.38124 5.44773 5.58855 5.62435 5.87761 6.06273 6.12659 6.33351 6.44491 6.71082 6.84079 7.28940 7.55360 8.84783 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015004 B = 0.002675 C = 0.002463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1865.705951 B =10464.852546 C =11363.739169 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.075 3.925 3 H 0.126 0.874 4 C 0.502 3.498 5 O -0.578 6.578 6 N -0.611 5.611 7 C 0.071 3.929 8 C 0.260 3.740 9 C -0.538 4.538 10 H 0.054 0.946 11 C 0.006 3.994 12 N -0.930 5.930 13 Si 0.968 3.032 14 H -0.265 1.265 15 H -0.269 1.269 16 H -0.283 1.283 17 N -0.532 5.532 18 C 0.055 3.945 19 C -0.101 4.101 20 C -0.075 4.075 21 C 0.099 3.901 22 H 0.071 0.929 23 C -0.155 4.155 24 C -0.119 4.119 25 C -0.156 4.156 26 C 0.055 3.945 27 O -0.396 6.396 28 C -0.093 4.093 29 C 0.038 3.962 30 H 0.099 0.901 31 H 0.073 0.927 32 H 0.047 0.953 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.100 0.900 36 H 0.021 0.979 37 H -0.005 1.005 38 H 0.267 0.733 39 H 0.048 0.952 40 H 0.088 0.912 41 H 0.088 0.912 42 H 0.057 0.943 43 H 0.091 0.909 44 H 0.083 0.917 45 H 0.056 0.944 46 H 0.075 0.925 47 H 0.070 0.930 48 H 0.053 0.947 49 H 0.088 0.912 50 H 0.092 0.908 51 H 0.062 0.938 52 H 0.047 0.953 53 H 0.061 0.939 54 H 0.032 0.968 55 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.083 5.235 27.264 28.060 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.036 4.036 3 H 0.143 0.857 4 C 0.290 3.710 5 O -0.458 6.458 6 N -0.342 5.342 7 C -0.071 4.071 8 C 0.138 3.862 9 C -0.577 4.577 10 H 0.072 0.928 11 C -0.193 4.193 12 N -0.570 5.570 13 Si 0.793 3.207 14 H -0.189 1.189 15 H -0.194 1.194 16 H -0.209 1.209 17 N -0.256 5.256 18 C -0.072 4.072 19 C -0.139 4.139 20 C -0.094 4.094 21 C 0.042 3.958 22 H 0.089 0.911 23 C -0.193 4.193 24 C -0.157 4.157 25 C -0.194 4.194 26 C -0.021 4.021 27 O -0.316 6.316 28 C -0.131 4.131 29 C -0.089 4.089 30 H 0.118 0.882 31 H 0.092 0.908 32 H 0.066 0.934 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.119 0.881 36 H 0.039 0.961 37 H 0.013 0.987 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.075 0.925 43 H 0.109 0.891 44 H 0.102 0.898 45 H 0.075 0.925 46 H 0.093 0.907 47 H 0.089 0.911 48 H 0.072 0.928 49 H 0.106 0.894 50 H 0.110 0.890 51 H 0.080 0.920 52 H 0.065 0.935 53 H 0.080 0.920 54 H 0.050 0.950 55 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -3.117 4.693 26.963 27.545 hybrid contribution -1.028 -1.079 -0.955 1.770 sum -4.145 3.614 26.008 26.583 Atomic orbital electron populations 1.22438 0.93827 1.02903 1.04452 1.21601 0.95209 0.98848 0.87980 0.85678 1.21192 0.78680 0.85805 0.85284 1.90509 1.45468 1.23711 1.86146 1.48126 1.62834 1.16957 1.06313 1.22093 0.99578 0.81291 1.04140 1.18722 0.94839 0.90943 0.81671 1.21703 0.97322 1.28334 1.10313 0.92764 1.25886 0.99112 0.97483 0.96825 1.70071 1.26019 1.41178 1.19692 0.85356 0.78938 0.77990 0.78449 1.18944 1.19372 1.20861 1.61808 1.60249 1.02238 1.01350 1.22233 0.98594 0.97923 0.88482 1.21515 1.00830 0.94330 0.97178 1.21282 0.99604 0.95373 0.93115 1.22116 0.80960 0.95060 0.97668 0.91113 1.22276 1.01208 0.96299 0.99478 1.21586 0.94547 1.01201 0.98354 1.22182 0.97221 0.97470 1.02513 1.22679 0.96328 0.92460 0.90632 1.87987 1.18048 1.79842 1.45706 1.21422 1.00283 0.97912 0.93436 1.22447 0.96183 0.89596 1.00710 0.88203 0.90781 0.93382 0.91538 0.91540 0.88125 0.96112 0.98659 0.92437 0.93367 0.89387 0.89331 0.92456 0.89098 0.89830 0.92519 0.90651 0.91095 0.92802 0.89373 0.88954 0.92023 0.93453 0.92045 0.95005 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.42 8.03 71.98 0.58 -3.84 16 2 C 0.08 2.28 1.92 44.17 0.08 2.37 16 3 H 0.13 3.08 7.38 -2.39 -0.02 3.06 16 4 C 0.50 21.87 6.79 87.66 0.60 22.47 16 5 O -0.58 -31.20 13.04 -3.03 -0.04 -31.24 16 6 N -0.61 -26.85 2.86 -851.13 -2.43 -29.29 16 7 C 0.07 2.18 9.79 127.77 1.25 3.43 16 8 C 0.26 14.52 5.22 85.63 0.45 14.97 16 9 C -0.54 -31.53 9.39 25.60 0.24 -31.29 16 10 H 0.05 3.13 7.81 -2.91 -0.02 3.10 16 11 C 0.01 0.33 5.46 84.65 0.46 0.79 16 12 N -0.93 -57.48 13.29 21.45 0.28 -57.20 16 13 Si 0.97 45.51 29.54 68.60 2.03 47.54 16 14 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 15 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 16 H -0.28 -13.22 7.11 99.48 0.71 -12.51 16 17 N -0.53 -16.17 4.51 -875.53 -3.95 -20.12 16 18 C 0.05 1.15 5.03 86.33 0.43 1.58 16 19 C -0.10 -2.02 5.27 30.65 0.16 -1.86 16 20 C -0.08 -1.57 2.15 -10.71 -0.02 -1.59 16 21 C 0.10 1.85 2.38 30.62 0.07 1.92 16 22 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 23 C -0.15 -2.65 5.14 30.68 0.16 -2.49 16 24 C -0.12 -1.66 6.03 30.71 0.19 -1.47 16 25 C -0.16 -2.35 6.13 30.69 0.19 -2.17 16 26 C 0.06 0.93 6.84 72.01 0.49 1.42 16 27 O -0.40 -9.13 8.97 -148.98 -1.34 -10.47 16 28 C -0.09 -2.68 4.84 30.64 0.15 -2.53 16 29 C 0.04 1.27 4.52 86.33 0.39 1.66 16 30 H 0.10 1.74 7.08 -2.39 -0.02 1.72 16 31 H 0.07 1.85 5.97 -2.39 -0.01 1.84 16 32 H 0.05 1.38 6.10 -2.39 -0.01 1.37 16 33 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 34 H 0.07 2.11 8.11 -2.39 -0.02 2.09 16 35 H 0.10 2.32 4.42 -2.39 -0.01 2.31 16 36 H 0.02 1.18 8.07 -2.38 -0.02 1.16 16 37 H 0.00 -0.31 7.36 -2.39 -0.02 -0.33 16 38 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 39 H 0.05 0.87 6.92 -2.39 -0.02 0.85 16 40 H 0.09 1.57 8.08 -2.39 -0.02 1.55 16 41 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 42 H 0.06 1.45 7.62 -2.39 -0.02 1.43 16 43 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 44 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 45 H 0.06 1.21 6.38 -2.39 -0.02 1.20 16 46 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 47 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 48 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 49 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.09 1.46 8.14 -2.38 -0.02 1.45 16 51 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 52 H 0.05 1.66 7.61 -2.38 -0.02 1.64 16 53 H 0.06 1.71 6.53 -2.38 -0.02 1.69 16 54 H 0.03 0.97 6.44 -2.39 -0.02 0.96 16 55 H 0.07 3.20 4.94 -2.45 -0.01 3.19 16 Total: -1.00 -77.50 403.16 1.27 -76.22 By element: Atomic # 1 Polarization: 20.34 SS G_CDS: 0.85 Total: 21.20 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 5.87 Total: 3.36 kcal Atomic # 7 Polarization: -100.51 SS G_CDS: -6.10 Total: -106.60 kcal Atomic # 8 Polarization: -40.33 SS G_CDS: -1.38 Total: -41.71 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -77.50 1.27 -76.22 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595790903.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.900 kcal (2) G-P(sol) polarization free energy of solvation -77.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds