Wall clock time and date at job start Tue Mar 31 2020 23:49:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.08990 * 109.47052 * 2 1 4 4 C 1.50696 * 109.47041 * 120.00568 * 2 1 3 5 5 O 1.21280 * 119.99821 * 93.92012 * 4 2 1 6 6 N 1.34773 * 119.99933 * 273.91085 * 4 2 1 7 7 C 1.46497 * 119.99971 * 0.02562 * 6 4 2 8 8 C 1.46502 * 120.00051 * 180.02562 * 6 4 2 9 9 C 1.50703 * 109.46908 * 90.00357 * 8 6 4 10 10 H 1.07999 * 119.99910 * 0.02562 * 9 8 6 11 11 C 1.37880 * 119.99695 * 179.97438 * 9 8 6 12 12 N 1.31511 * 120.00435 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99747 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47136 * 90.00496 * 13 11 9 15 15 H 1.48497 * 109.47144 * 210.00629 * 13 11 9 16 16 H 1.48499 * 109.46942 * 330.00326 * 13 11 9 17 17 N 1.46900 * 109.46519 * 240.00179 * 2 1 3 18 18 C 1.46848 * 110.99672 * 186.00925 * 17 2 1 19 19 C 1.53039 * 109.52183 * 185.83896 * 18 17 2 20 20 C 1.53115 * 109.28068 * 300.82280 * 19 18 17 21 21 C 1.53000 * 109.52254 * 177.55832 * 20 19 18 22 22 H 1.09007 * 109.47931 * 59.97793 * 21 20 19 23 23 C 1.53089 * 109.48179 * 180.02562 * 21 20 19 24 24 C 1.53174 * 109.16576 * 177.59087 * 23 21 20 25 25 C 1.53181 * 109.04044 * 303.02141 * 24 23 21 26 26 C 1.53092 * 109.16031 * 56.97481 * 25 24 23 27 27 O 1.42906 * 109.48011 * 299.94570 * 21 20 19 28 28 C 1.53117 * 109.15911 * 57.65823 * 20 19 18 29 29 C 1.46842 * 111.00601 * 310.22448 * 17 2 1 30 30 H 1.08998 * 109.47261 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46387 * 299.99231 * 1 2 3 32 32 H 1.08990 * 109.47214 * 59.99586 * 1 2 3 33 33 H 1.09003 * 109.47379 * 89.99754 * 7 6 4 34 34 H 1.09004 * 109.47084 * 209.99740 * 7 6 4 35 35 H 1.08999 * 109.47355 * 329.99420 * 7 6 4 36 36 H 1.09006 * 109.47448 * 210.00404 * 8 6 4 37 37 H 1.08998 * 109.47449 * 330.00468 * 8 6 4 38 38 H 0.96994 * 120.00854 * 179.97438 * 12 11 9 39 39 H 1.09001 * 109.46107 * 65.83189 * 18 17 2 40 40 H 1.08997 * 109.46479 * 305.86217 * 18 17 2 41 41 H 1.09004 * 109.49853 * 180.88336 * 19 18 17 42 42 H 1.08997 * 109.53222 * 60.78931 * 19 18 17 43 43 H 1.08995 * 109.52515 * 297.68617 * 20 19 18 44 44 H 1.09002 * 109.52233 * 297.49536 * 23 21 20 45 45 H 1.09002 * 109.52157 * 57.62632 * 23 21 20 46 46 H 1.09004 * 109.54507 * 62.88573 * 24 23 21 47 47 H 1.08995 * 109.54799 * 183.05883 * 24 23 21 48 48 H 1.08991 * 109.52265 * 176.88220 * 25 24 23 49 49 H 1.08994 * 109.51894 * 297.07747 * 25 24 23 50 50 H 1.09002 * 109.47897 * 62.37709 * 26 25 24 51 51 H 1.08999 * 109.47756 * 182.39851 * 26 25 24 52 52 H 1.08996 * 109.50804 * 62.28251 * 28 20 19 53 53 H 1.09002 * 109.50597 * 182.40042 * 28 20 19 54 54 H 1.09004 * 109.45797 * 294.18062 * 29 17 2 55 55 H 1.08999 * 109.46141 * 54.14023 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.3022 -1.8919 1.1807 6 7 2.1819 -0.0331 2.3858 7 6 1.8557 1.3938 2.4459 8 6 2.6708 -0.7237 3.5818 9 6 4.1747 -0.6396 3.6309 10 1 4.7124 -0.1231 2.8497 11 6 4.8639 -1.2213 4.6739 12 7 4.2091 -1.8499 5.6255 13 14 6.7280 -1.1165 4.7351 14 1 7.1310 0.1049 5.4773 15 1 7.2688 -2.3156 5.4243 16 1 7.2660 -1.0557 3.3524 17 7 2.0196 -0.6925 -1.1995 18 6 3.4805 -0.8377 -1.1639 19 6 3.9680 -1.4294 -2.4884 20 6 3.3061 -2.7926 -2.7072 21 6 3.7426 -3.3619 -4.0586 22 1 4.8264 -3.4783 -4.0710 23 6 3.0798 -4.7245 -4.2767 24 6 3.4737 -5.2602 -5.6566 25 6 3.0678 -4.2389 -6.7237 26 6 3.7311 -2.8950 -6.4110 27 8 3.3470 -2.4692 -5.1020 28 6 1.7847 -2.6207 -2.6919 29 6 1.3604 -1.9946 -1.3615 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3632 0.5138 0.8902 32 1 -0.3633 0.5138 -0.8899 33 1 0.8082 1.5158 2.7218 34 1 2.4865 1.8798 3.1903 35 1 2.0296 1.8477 1.4703 36 1 2.2513 -0.2523 4.4707 37 1 2.3663 -1.7697 3.5474 38 1 4.6939 -2.2594 6.3590 39 1 3.7596 -1.5010 -0.3453 40 1 3.9390 0.1394 -1.0119 41 1 5.0507 -1.5516 -2.4557 42 1 3.7019 -0.7600 -3.3064 43 1 3.6047 -3.4745 -1.9111 44 1 3.4146 -5.4198 -3.5069 45 1 1.9966 -4.6154 -4.2230 46 1 4.5519 -5.4165 -5.6930 47 1 2.9621 -6.2048 -5.8408 48 1 3.3940 -4.5869 -7.7037 49 1 1.9844 -4.1198 -6.7204 50 1 4.8146 -3.0057 -6.4542 51 1 3.4120 -2.1532 -7.1431 52 1 1.4836 -1.9700 -3.5127 53 1 1.3073 -3.5942 -2.8046 54 1 1.6494 -2.6524 -0.5418 55 1 0.2790 -1.8577 -1.3529 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595790904.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:55 Heat of formation + Delta-G solvation = -107.167325 kcal Electronic energy + Delta-G solvation = -31773.493393 eV Core-core repulsion = 27809.028584 eV Total energy + Delta-G solvation = -3964.464810 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.65254 -40.58477 -38.80986 -36.58123 -35.69278 -34.71795 -34.51157 -32.60159 -31.64940 -30.26381 -29.55692 -27.40266 -26.67691 -25.76753 -24.96001 -24.22337 -23.27002 -22.35391 -21.11613 -20.56790 -19.76878 -18.73396 -18.02874 -17.65068 -17.09653 -16.85000 -16.61436 -16.25590 -15.85024 -15.77749 -15.68205 -15.42986 -15.01254 -14.86891 -14.65793 -14.45843 -14.16831 -14.07382 -13.66454 -13.62052 -13.52658 -13.45893 -13.18594 -13.08437 -13.01253 -12.87085 -12.62965 -12.50544 -12.32437 -12.26101 -12.17379 -12.11735 -11.91274 -11.88203 -11.69411 -11.53012 -11.32399 -11.13078 -10.98183 -10.84503 -10.67814 -10.24433 -9.41364 -9.07192 -8.25716 -6.40902 1.32403 1.35236 1.45526 1.81461 2.29613 2.45659 2.88054 2.92077 3.03307 3.61432 3.71650 3.77714 3.92528 3.95881 3.98669 4.04065 4.13125 4.15501 4.27185 4.35005 4.42016 4.45555 4.46725 4.59879 4.63511 4.67395 4.69162 4.74900 4.82018 4.84946 4.86021 4.89108 4.93287 4.96456 4.97209 4.98015 5.05321 5.05674 5.11894 5.16243 5.17999 5.22114 5.24987 5.29705 5.31727 5.43280 5.52379 5.59558 5.82426 6.00863 6.03121 6.11342 6.39777 6.66573 6.78875 7.25383 7.48479 8.81097 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013470 B = 0.002995 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.232846 B = 9348.030507 C =10565.222003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.064 3.936 3 H 0.121 0.879 4 C 0.472 3.528 5 O -0.588 6.588 6 N -0.609 5.609 7 C 0.076 3.924 8 C 0.261 3.739 9 C -0.539 4.539 10 H 0.050 0.950 11 C 0.008 3.992 12 N -0.929 5.929 13 Si 0.966 3.034 14 H -0.262 1.262 15 H -0.280 1.280 16 H -0.274 1.274 17 N -0.495 5.495 18 C 0.044 3.956 19 C -0.092 4.092 20 C -0.080 4.080 21 C 0.105 3.895 22 H 0.054 0.946 23 C -0.153 4.153 24 C -0.121 4.121 25 C -0.151 4.151 26 C 0.053 3.947 27 O -0.386 6.386 28 C -0.090 4.090 29 C 0.033 3.967 30 H 0.051 0.949 31 H 0.075 0.925 32 H 0.099 0.901 33 H 0.073 0.927 34 H 0.065 0.935 35 H 0.092 0.908 36 H 0.021 0.979 37 H -0.006 1.006 38 H 0.267 0.733 39 H 0.015 0.985 40 H 0.069 0.931 41 H 0.062 0.938 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.064 0.936 47 H 0.074 0.926 48 H 0.088 0.912 49 H 0.067 0.933 50 H 0.051 0.949 51 H 0.104 0.896 52 H 0.077 0.923 53 H 0.070 0.930 54 H 0.034 0.966 55 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.246 1.656 -24.298 24.913 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.048 4.048 3 H 0.138 0.862 4 C 0.260 3.740 5 O -0.469 6.469 6 N -0.341 5.341 7 C -0.066 4.066 8 C 0.139 3.861 9 C -0.578 4.578 10 H 0.068 0.932 11 C -0.191 4.191 12 N -0.569 5.569 13 Si 0.790 3.210 14 H -0.187 1.187 15 H -0.205 1.205 16 H -0.199 1.199 17 N -0.218 5.218 18 C -0.084 4.084 19 C -0.130 4.130 20 C -0.098 4.098 21 C 0.047 3.953 22 H 0.072 0.928 23 C -0.190 4.190 24 C -0.159 4.159 25 C -0.189 4.189 26 C -0.023 4.023 27 O -0.305 6.305 28 C -0.128 4.128 29 C -0.095 4.095 30 H 0.070 0.930 31 H 0.094 0.906 32 H 0.118 0.882 33 H 0.092 0.908 34 H 0.083 0.917 35 H 0.110 0.890 36 H 0.039 0.961 37 H 0.012 0.988 38 H 0.076 0.924 39 H 0.033 0.967 40 H 0.088 0.912 41 H 0.081 0.919 42 H 0.100 0.900 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.083 0.917 47 H 0.093 0.907 48 H 0.106 0.894 49 H 0.086 0.914 50 H 0.069 0.931 51 H 0.122 0.878 52 H 0.096 0.904 53 H 0.089 0.911 54 H 0.052 0.948 55 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.314 1.429 -24.519 25.129 hybrid contribution 1.493 -1.102 1.671 2.497 sum -3.821 0.327 -22.849 23.169 Atomic orbital electron populations 1.21822 0.90086 1.02779 1.04445 1.22136 0.98825 0.99085 0.84725 0.86160 1.22574 0.77848 0.87580 0.86012 1.90571 1.53323 1.18265 1.84729 1.48359 1.63322 1.11527 1.10861 1.21990 1.01338 0.79487 1.03807 1.18701 0.93423 0.91459 0.82528 1.21652 0.92843 1.35410 1.07896 0.93210 1.25853 1.03871 0.94398 0.94991 1.70046 1.37787 1.36621 1.12398 0.85439 0.79049 0.78274 0.78218 1.18662 1.20541 1.19873 1.62622 1.05076 1.21134 1.32994 1.22177 0.88387 1.00098 0.97770 1.21420 0.98915 0.96413 0.96249 1.21198 0.96897 0.96788 0.94930 1.21949 0.97188 0.89217 0.86913 0.92843 1.22249 1.01882 0.96503 0.98388 1.21598 1.01497 0.98974 0.93825 1.22157 1.01526 0.95557 0.99655 1.22730 0.98549 0.96767 0.84250 1.87936 1.80200 1.47249 1.15163 1.21469 0.94287 1.00435 0.96599 1.22448 0.99297 0.89932 0.97784 0.92993 0.90618 0.88204 0.90834 0.91656 0.88961 0.96138 0.98774 0.92388 0.96681 0.91238 0.91943 0.89979 0.92333 0.91310 0.90885 0.91729 0.90707 0.89394 0.91449 0.93091 0.87829 0.90423 0.91103 0.94819 0.89641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.16 8.59 71.99 0.62 -2.54 16 2 C 0.06 1.94 2.29 44.17 0.10 2.05 16 3 H 0.12 3.12 6.01 -2.39 -0.01 3.11 16 4 C 0.47 19.89 5.93 87.66 0.52 20.41 16 5 O -0.59 -30.38 11.91 -3.03 -0.04 -30.41 16 6 N -0.61 -26.40 2.86 -851.13 -2.43 -28.84 16 7 C 0.08 2.31 10.04 127.77 1.28 3.59 16 8 C 0.26 14.41 5.16 85.63 0.44 14.85 16 9 C -0.54 -31.75 9.39 25.60 0.24 -31.51 16 10 H 0.05 2.92 7.81 -2.91 -0.02 2.90 16 11 C 0.01 0.46 5.46 84.66 0.46 0.92 16 12 N -0.93 -57.13 13.29 21.45 0.28 -56.85 16 13 Si 0.97 45.68 29.54 68.60 2.03 47.70 16 14 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 15 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 16 H -0.27 -12.83 7.11 99.48 0.71 -12.13 16 17 N -0.50 -15.15 4.73 -875.52 -4.14 -19.29 16 18 C 0.04 1.48 4.90 86.33 0.42 1.90 16 19 C -0.09 -2.58 5.26 30.65 0.16 -2.42 16 20 C -0.08 -2.11 2.15 -10.72 -0.02 -2.14 16 21 C 0.11 2.28 2.38 30.62 0.07 2.36 16 22 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 23 C -0.15 -2.86 5.14 30.68 0.16 -2.70 16 24 C -0.12 -1.77 6.03 30.71 0.19 -1.58 16 25 C -0.15 -1.97 6.14 30.69 0.19 -1.78 16 26 C 0.05 0.82 6.84 72.01 0.49 1.31 16 27 O -0.39 -8.33 8.97 -148.98 -1.34 -9.67 16 28 C -0.09 -2.33 4.84 30.65 0.15 -2.18 16 29 C 0.03 1.01 4.63 86.33 0.40 1.41 16 30 H 0.05 1.36 6.19 -2.39 -0.01 1.34 16 31 H 0.07 1.61 7.90 -2.38 -0.02 1.59 16 32 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 33 H 0.07 1.84 8.12 -2.39 -0.02 1.82 16 34 H 0.06 2.10 8.07 -2.39 -0.02 2.08 16 35 H 0.09 2.19 5.83 -2.39 -0.01 2.18 16 36 H 0.02 1.15 8.07 -2.38 -0.02 1.13 16 37 H -0.01 -0.38 7.42 -2.39 -0.02 -0.39 16 38 H 0.27 15.38 8.31 -92.71 -0.77 14.61 16 39 H 0.01 0.65 6.04 -2.39 -0.01 0.63 16 40 H 0.07 2.24 8.12 -2.39 -0.02 2.22 16 41 H 0.06 1.68 8.14 -2.38 -0.02 1.66 16 42 H 0.08 2.21 7.62 -2.39 -0.02 2.19 16 43 H 0.06 1.80 8.14 -2.39 -0.02 1.79 16 44 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.07 1.41 6.38 -2.39 -0.02 1.40 16 46 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 47 H 0.07 0.95 8.14 -2.39 -0.02 0.94 16 48 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 49 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 50 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 51 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 52 H 0.08 1.98 7.61 -2.39 -0.02 1.96 16 53 H 0.07 1.67 6.53 -2.39 -0.02 1.66 16 54 H 0.03 1.33 5.65 -2.38 -0.01 1.32 16 55 H 0.09 2.34 5.82 -2.39 -0.01 2.32 16 Total: -1.00 -74.42 404.84 1.09 -73.33 By element: Atomic # 1 Polarization: 21.23 SS G_CDS: 0.85 Total: 22.08 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: 5.87 Total: 1.94 kcal Atomic # 7 Polarization: -98.69 SS G_CDS: -6.28 Total: -104.97 kcal Atomic # 8 Polarization: -38.71 SS G_CDS: -1.37 Total: -40.08 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.70 kcal Total: -74.42 1.09 -73.33 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595790904.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.836 kcal (2) G-P(sol) polarization free energy of solvation -74.421 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds