Wall clock time and date at job start Tue Mar 31 2020 22:20:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53006 * 109.47447 * 2 1 4 4 C 1.53001 * 109.47371 * 119.99937 * 2 1 3 5 5 N 1.46496 * 109.47620 * 174.11147 * 4 2 1 6 6 C 1.46498 * 120.00421 * 276.69300 * 5 4 2 7 7 C 1.50699 * 109.46931 * 269.99741 * 6 5 4 8 8 H 1.07997 * 120.00287 * 0.02562 * 7 6 5 9 9 C 1.37885 * 120.00162 * 179.97438 * 7 6 5 10 10 N 1.31520 * 119.99474 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 119.99971 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.46959 * 60.00472 * 11 9 7 13 13 H 1.48501 * 109.46825 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47248 * 300.00280 * 11 9 7 15 15 C 1.34781 * 119.99689 * 96.68749 * 5 4 2 16 16 O 1.21285 * 119.99584 * 185.39846 * 15 5 4 17 17 C 1.50703 * 120.00028 * 5.40019 * 15 5 4 18 18 C 1.52997 * 109.46956 * 174.61924 * 17 15 5 19 19 H 1.09004 * 109.47141 * 55.00114 * 18 17 15 20 20 C 1.53001 * 109.47287 * 174.99964 * 18 17 15 21 21 N 1.46503 * 109.47424 * 295.00099 * 18 17 15 22 22 C 1.34771 * 120.00319 * 154.99808 * 21 18 17 23 23 O 1.21284 * 119.99665 * 0.02562 * 22 21 18 24 24 C 1.50698 * 120.00243 * 179.97438 * 22 21 18 25 25 C 1.54262 * 110.03400 * 297.91420 * 24 22 21 26 26 C 1.54964 * 104.16038 * 217.13542 * 25 24 22 27 27 C 1.54890 * 102.78063 * 37.88538 * 26 25 24 28 28 C 1.53876 * 110.03476 * 180.69284 * 24 22 21 29 29 H 1.08999 * 109.47087 * 300.00361 * 1 2 3 30 30 H 1.09004 * 109.47085 * 59.99558 * 1 2 3 31 31 H 1.08992 * 109.47297 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47087 * 239.99639 * 2 1 3 33 33 H 1.08998 * 109.46799 * 304.70790 * 3 2 1 34 34 H 1.08992 * 109.46987 * 64.70845 * 3 2 1 35 35 H 1.08998 * 109.46651 * 184.70682 * 3 2 1 36 36 H 1.08999 * 109.46918 * 54.11224 * 4 2 1 37 37 H 1.09002 * 109.47141 * 294.11833 * 4 2 1 38 38 H 1.09002 * 109.47016 * 29.99238 * 6 5 4 39 39 H 1.08997 * 109.47586 * 149.99924 * 6 5 4 40 40 H 0.96997 * 119.99566 * 180.02562 * 10 9 7 41 41 H 1.09001 * 109.46933 * 54.62280 * 17 15 5 42 42 H 1.08994 * 109.46715 * 294.61886 * 17 15 5 43 43 H 1.09004 * 109.46908 * 60.00007 * 20 18 17 44 44 H 1.08994 * 109.47214 * 180.02562 * 20 18 17 45 45 H 1.09000 * 109.46741 * 300.00650 * 20 18 17 46 46 H 0.97001 * 119.99786 * 335.27746 * 21 18 17 47 47 H 1.09003 * 110.01638 * 59.29973 * 24 22 21 48 48 H 1.09001 * 110.48420 * 335.78079 * 25 24 22 49 49 H 1.09000 * 110.49117 * 98.42232 * 25 24 22 50 50 H 1.09004 * 110.71936 * 279.57315 * 26 25 24 51 51 H 1.09005 * 110.92747 * 156.29586 * 26 25 24 52 52 H 1.09001 * 110.48897 * 203.41185 * 27 26 25 53 53 H 1.08995 * 110.60159 * 80.81404 * 27 26 25 54 54 H 1.09003 * 110.03304 * 238.57437 * 28 24 22 55 55 H 1.08999 * 110.02972 * 0.02562 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.4981 -0.8452 1.1806 6 6 4.1051 -1.9447 0.4263 7 6 4.2996 -3.1304 1.3358 8 1 4.0005 -3.0712 2.3719 9 6 4.8584 -4.2915 0.8450 10 7 5.2221 -4.3638 -0.4168 11 14 5.1001 -5.7610 1.9726 12 1 3.7851 -6.1948 2.5091 13 1 5.7141 -6.8760 1.2077 14 1 5.9924 -5.3808 3.0969 15 6 4.2811 0.0524 1.8112 16 8 5.4855 0.0083 1.6746 17 6 3.6602 1.1109 2.6860 18 6 4.7642 1.9083 3.3833 19 1 5.4500 2.3089 2.6366 20 6 4.1401 3.0607 4.1728 21 7 5.4975 1.0301 4.2984 22 6 6.7704 1.3186 4.6342 23 8 7.3088 2.3056 4.1791 24 6 7.5244 0.4156 5.5760 25 6 6.8262 0.3851 6.9513 26 6 7.9941 0.3260 7.9681 27 6 9.0556 1.2527 7.3250 28 6 8.9414 0.9666 5.8133 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6095 1.9801 -0.8448 34 1 1.7473 1.9314 0.9291 35 1 3.1268 1.4435 -0.0843 36 1 1.5932 -1.7139 1.3035 37 1 1.7652 -0.1502 2.1361 38 1 3.4506 -2.2237 -0.3994 39 1 5.0706 -1.6262 0.0332 40 1 5.6149 -5.1807 -0.7622 41 1 3.0260 0.6369 3.4352 42 1 3.0590 1.7821 2.0730 43 1 3.4544 2.6601 4.9194 44 1 4.9266 3.6290 4.6691 45 1 3.5945 3.7140 3.4918 46 1 5.0681 0.2388 4.6595 47 1 7.5798 -0.5916 5.1630 48 1 6.2366 1.2897 7.0999 49 1 6.1969 -0.5005 7.0401 50 1 8.3744 -0.6914 8.0599 51 1 7.6840 0.7100 8.9400 52 1 10.0522 0.9999 7.6868 53 1 8.8288 2.2982 7.5334 54 1 9.6844 0.2265 5.5162 55 1 9.0835 1.8874 5.2476 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000727103755.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:13 Heat of formation + Delta-G solvation = -128.966691 kcal Electronic energy + Delta-G solvation = -31452.842855 eV Core-core repulsion = 27487.432754 eV Total energy + Delta-G solvation = -3965.410101 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.43679 -40.67002 -38.25121 -37.68157 -36.64935 -35.41860 -34.09293 -32.85382 -30.40292 -29.72538 -29.50018 -28.57753 -27.86807 -26.82079 -24.94958 -23.62443 -21.95725 -21.47999 -21.38295 -20.61205 -19.72270 -18.60609 -18.39646 -17.99707 -17.40467 -17.03711 -16.65442 -16.28691 -16.06741 -15.72174 -15.56407 -15.47605 -14.87083 -14.52242 -14.45884 -14.35652 -14.18263 -13.96456 -13.80455 -13.47756 -13.34048 -13.26610 -12.89296 -12.83492 -12.75471 -12.66646 -12.54794 -12.52435 -12.26511 -12.22722 -12.07614 -12.00981 -11.95847 -11.92794 -11.80772 -11.66104 -11.62555 -11.45950 -11.42721 -10.68856 -10.63894 -10.52920 -10.00663 -9.34583 -8.21351 -6.36810 1.36118 1.40185 1.47424 1.70965 1.89807 2.30149 2.31367 2.46696 3.08223 3.52260 3.64907 3.67346 3.70813 3.82246 3.94213 4.07521 4.20663 4.24659 4.28465 4.42252 4.45792 4.51556 4.52580 4.56530 4.58598 4.66178 4.68423 4.75059 4.80656 4.83014 4.85400 4.95310 4.96420 5.05074 5.06938 5.07715 5.09749 5.10488 5.22362 5.22510 5.25074 5.31490 5.33014 5.36141 5.43465 5.45150 5.52183 5.60076 5.63076 5.89053 6.07476 6.58996 6.71995 6.86365 7.29948 7.32460 7.55682 8.85458 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008145 B = 0.004108 C = 0.002979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3436.756343 B = 6813.870777 C = 9397.220504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.115 4.115 3 C -0.145 4.145 4 C 0.110 3.890 5 N -0.600 5.600 6 C 0.266 3.734 7 C -0.537 4.537 8 H 0.060 0.940 9 C 0.005 3.995 10 N -0.932 5.932 11 Si 0.967 3.033 12 H -0.257 1.257 13 H -0.284 1.284 14 H -0.274 1.274 15 C 0.497 3.503 16 O -0.594 6.594 17 C -0.143 4.143 18 C 0.155 3.845 19 H 0.050 0.950 20 C -0.148 4.148 21 N -0.706 5.706 22 C 0.519 3.481 23 O -0.587 6.587 24 C -0.118 4.118 25 C -0.107 4.107 26 C -0.118 4.118 27 C -0.118 4.118 28 C -0.123 4.123 29 H 0.079 0.921 30 H 0.062 0.938 31 H 0.052 0.948 32 H 0.039 0.961 33 H 0.066 0.934 34 H 0.086 0.914 35 H 0.023 0.977 36 H 0.067 0.933 37 H 0.111 0.889 38 H 0.013 0.987 39 H -0.012 1.012 40 H 0.265 0.735 41 H 0.127 0.873 42 H 0.136 0.864 43 H 0.083 0.917 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.405 0.595 47 H 0.090 0.910 48 H 0.071 0.929 49 H 0.087 0.913 50 H 0.075 0.925 51 H 0.087 0.913 52 H 0.078 0.922 53 H 0.063 0.937 54 H 0.065 0.935 55 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.897 12.164 15.471 21.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.134 4.134 3 C -0.202 4.202 4 C -0.012 4.012 5 N -0.330 5.330 6 C 0.144 3.856 7 C -0.576 4.576 8 H 0.078 0.922 9 C -0.193 4.193 10 N -0.572 5.572 11 Si 0.791 3.209 12 H -0.182 1.182 13 H -0.209 1.209 14 H -0.200 1.200 15 C 0.287 3.713 16 O -0.475 6.475 17 C -0.182 4.182 18 C 0.050 3.950 19 H 0.068 0.932 20 C -0.206 4.206 21 N -0.356 5.356 22 C 0.307 3.693 23 O -0.468 6.468 24 C -0.139 4.139 25 C -0.144 4.144 26 C -0.155 4.155 27 C -0.156 4.156 28 C -0.161 4.161 29 H 0.098 0.902 30 H 0.081 0.919 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.042 0.958 36 H 0.086 0.914 37 H 0.129 0.871 38 H 0.031 0.969 39 H 0.006 0.994 40 H 0.074 0.926 41 H 0.145 0.855 42 H 0.154 0.846 43 H 0.102 0.898 44 H 0.062 0.938 45 H 0.105 0.895 46 H 0.240 0.760 47 H 0.108 0.892 48 H 0.090 0.910 49 H 0.106 0.894 50 H 0.094 0.906 51 H 0.105 0.895 52 H 0.097 0.903 53 H 0.082 0.918 54 H 0.084 0.916 55 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -7.860 12.711 14.911 21.111 hybrid contribution 0.686 -1.584 -0.637 1.840 sum -7.174 11.127 14.274 19.468 Atomic orbital electron populations 1.21703 0.92112 1.02195 1.03202 1.21511 0.97677 0.96617 0.97621 1.21952 0.99347 0.95513 1.03415 1.21874 0.78503 1.01561 0.99288 1.48158 1.07438 1.26782 1.50625 1.18579 0.91902 0.84044 0.91041 1.21682 1.41091 0.97963 0.96863 0.92195 1.25900 0.94807 1.01993 0.96631 1.70075 1.42765 1.28816 1.15532 0.85478 0.79055 0.77932 0.78442 1.18172 1.20925 1.19966 1.21256 0.86675 0.82729 0.80681 1.90691 1.17265 1.74709 1.64790 1.22330 0.99142 0.96975 0.99786 1.20699 0.92239 0.90741 0.91344 0.93205 1.22075 1.00764 0.96744 1.01009 1.45871 1.13473 1.28674 1.47566 1.20924 0.81747 0.85586 0.81025 1.90591 1.68747 1.30944 1.56539 1.22020 0.96567 0.98735 0.96602 1.22360 0.98227 1.03077 0.90775 1.22515 0.94463 1.00253 0.98266 1.22338 1.00233 0.99948 0.93045 1.22160 0.94153 1.01322 0.98455 0.90171 0.91873 0.92909 0.94255 0.91513 0.89536 0.95783 0.91437 0.87147 0.96910 0.99364 0.92615 0.85476 0.84628 0.89761 0.93755 0.89485 0.75957 0.89183 0.90995 0.89428 0.90608 0.89479 0.90311 0.91800 0.91586 0.92040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.39 9.19 71.98 0.66 -1.73 16 2 C -0.11 -2.89 3.11 -10.79 -0.03 -2.92 16 3 C -0.15 -3.20 7.59 71.98 0.55 -2.65 16 4 C 0.11 3.14 4.89 86.38 0.42 3.57 16 5 N -0.60 -24.25 2.26 -826.15 -1.87 -26.12 16 6 C 0.27 14.35 5.22 85.63 0.45 14.80 16 7 C -0.54 -30.31 9.39 25.60 0.24 -30.07 16 8 H 0.06 3.24 7.81 -2.91 -0.02 3.22 16 9 C 0.01 0.30 5.46 84.66 0.46 0.77 16 10 N -0.93 -57.02 13.29 21.45 0.28 -56.73 16 11 Si 0.97 44.15 29.54 68.60 2.03 46.18 16 12 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 13 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 14 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 15 C 0.50 19.58 6.28 87.66 0.55 20.13 16 16 O -0.59 -30.60 15.00 -3.04 -0.05 -30.65 16 17 C -0.14 -3.52 3.60 29.85 0.11 -3.41 16 18 C 0.15 4.28 2.14 44.99 0.10 4.38 16 19 H 0.05 1.85 7.31 -2.38 -0.02 1.83 16 20 C -0.15 -2.83 9.48 71.98 0.68 -2.15 16 21 N -0.71 -20.57 4.29 -442.53 -1.90 -22.47 16 22 C 0.52 17.35 6.97 87.66 0.61 17.97 16 23 O -0.59 -24.10 14.87 -3.04 -0.05 -24.14 16 24 C -0.12 -3.18 3.29 -10.82 -0.04 -3.22 16 25 C -0.11 -2.01 6.30 31.69 0.20 -1.81 16 26 C -0.12 -1.88 6.91 31.91 0.22 -1.66 16 27 C -0.12 -2.27 6.83 31.67 0.22 -2.06 16 28 C -0.12 -3.25 6.40 31.32 0.20 -3.05 16 29 H 0.08 1.02 8.14 -2.39 -0.02 1.01 16 30 H 0.06 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.04 1.28 8.01 -2.39 -0.02 1.26 16 33 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.09 1.33 6.49 -2.39 -0.02 1.31 16 35 H 0.02 0.68 6.87 -2.39 -0.02 0.66 16 36 H 0.07 2.09 8.12 -2.39 -0.02 2.07 16 37 H 0.11 2.18 6.09 -2.39 -0.01 2.16 16 38 H 0.01 0.72 7.94 -2.39 -0.02 0.70 16 39 H -0.01 -0.76 7.35 -2.39 -0.02 -0.77 16 40 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.13 2.25 7.36 -2.39 -0.02 2.23 16 42 H 0.14 2.58 4.80 -2.39 -0.01 2.57 16 43 H 0.08 1.17 8.14 -2.38 -0.02 1.15 16 44 H 0.04 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 46 H 0.41 10.24 8.59 -92.71 -0.80 9.45 16 47 H 0.09 2.58 8.14 -2.39 -0.02 2.57 16 48 H 0.07 1.32 7.85 -2.39 -0.02 1.30 16 49 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 50 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 51 H 0.09 1.08 8.14 -2.38 -0.02 1.06 16 52 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 53 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 54 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 55 H 0.06 1.97 6.39 -2.39 -0.02 1.96 16 Total: -1.00 -82.57 426.89 4.11 -78.46 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.06 Total: 28.58 kcal Atomic # 6 Polarization: 1.30 SS G_CDS: 5.59 Total: 6.89 kcal Atomic # 7 Polarization: -101.84 SS G_CDS: -3.48 Total: -105.32 kcal Atomic # 8 Polarization: -54.70 SS G_CDS: -0.09 Total: -54.79 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.18 kcal Total: -82.57 4.11 -78.46 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000727103755.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.507 kcal (2) G-P(sol) polarization free energy of solvation -82.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds