Wall clock time and date at job start Wed Apr 1 2020 00:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.46970 * 2 1 4 4 C 1.48124 * 110.99989 * 289.53909 * 3 2 1 5 5 C 1.53084 * 85.91484 * 222.97760 * 4 3 2 6 6 C 1.53481 * 115.24720 * 139.92498 * 5 4 3 7 7 C 1.55083 * 103.95657 * 153.40680 * 6 5 4 8 8 H 1.08998 * 110.88758 * 81.18718 * 7 6 5 9 9 O 1.42897 * 110.73277 * 204.42628 * 7 6 5 10 10 C 1.54963 * 102.87147 * 322.77359 * 7 6 5 11 11 H 1.09004 * 110.47716 * 278.69243 * 10 7 6 12 12 N 1.46494 * 110.48070 * 156.20109 * 10 7 6 13 13 C 1.34771 * 120.00284 * 86.45224 * 12 10 7 14 14 O 1.21279 * 120.00060 * 0.02562 * 13 12 10 15 15 C 1.50700 * 120.00344 * 179.97438 * 13 12 10 16 16 H 1.09010 * 109.47047 * 299.99994 * 15 13 12 17 17 C 1.53000 * 109.47281 * 59.99607 * 15 13 12 18 18 C 1.50695 * 109.47493 * 180.02562 * 15 13 12 19 19 H 1.08000 * 119.99808 * 359.97438 * 18 15 13 20 20 C 1.37878 * 120.00234 * 180.02562 * 18 15 13 21 21 N 1.31522 * 119.99934 * 179.97438 * 20 18 15 22 22 Si 1.86800 * 120.00069 * 359.97438 * 20 18 15 23 23 H 1.48493 * 109.47243 * 90.00413 * 22 20 18 24 24 H 1.48497 * 109.47207 * 210.00712 * 22 20 18 25 25 H 1.48502 * 109.46698 * 330.00147 * 22 20 18 26 26 C 1.53082 * 115.48539 * 266.28824 * 5 4 3 27 27 C 1.48123 * 110.99962 * 190.00430 * 3 2 1 28 28 H 1.09002 * 113.80436 * 22.77248 * 27 3 2 29 29 C 1.53008 * 113.80211 * 251.26747 * 27 3 2 30 30 C 1.52999 * 109.46846 * 78.60695 * 29 27 3 31 31 C 1.53000 * 109.47083 * 198.60635 * 29 27 3 32 32 H 1.08995 * 109.47300 * 60.00381 * 1 2 3 33 33 H 1.09001 * 109.46817 * 180.02562 * 1 2 3 34 34 H 1.09002 * 109.47065 * 299.99331 * 1 2 3 35 35 H 1.09008 * 109.47403 * 240.00380 * 2 1 3 36 36 H 1.09001 * 109.47643 * 119.99917 * 2 1 3 37 37 H 1.09000 * 113.80140 * 108.72732 * 4 3 2 38 38 H 1.08997 * 113.80322 * 337.22673 * 4 3 2 39 39 H 1.08994 * 110.53485 * 34.78443 * 6 5 4 40 40 H 1.09005 * 110.52989 * 272.02065 * 6 5 4 41 41 H 0.96702 * 113.99683 * 174.90828 * 9 7 6 42 42 H 0.97002 * 120.00090 * 266.44667 * 12 10 7 43 43 H 1.09003 * 109.46992 * 180.02562 * 17 15 13 44 44 H 1.09004 * 109.47126 * 300.00510 * 17 15 13 45 45 H 1.08996 * 109.46681 * 60.00185 * 17 15 13 46 46 H 0.96998 * 119.99215 * 179.97438 * 21 20 18 47 47 H 1.09002 * 110.10577 * 110.84458 * 26 5 4 48 48 H 1.09006 * 110.15464 * 349.25993 * 26 5 4 49 49 H 1.08995 * 109.47236 * 318.60747 * 29 27 3 50 50 H 1.09003 * 109.47309 * 60.00278 * 30 29 27 51 51 H 1.09002 * 109.46995 * 180.02562 * 30 29 27 52 52 H 1.08996 * 109.47163 * 300.00119 * 30 29 27 53 53 H 1.08996 * 109.47378 * 307.66454 * 31 29 27 54 54 H 1.08997 * 109.47087 * 67.66653 * 31 29 27 55 55 H 1.08996 * 109.46905 * 187.66550 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7605 2.0396 -1.3032 5 6 3.1783 2.6031 -1.1781 6 6 3.9912 2.6254 -2.4798 7 6 4.9978 3.7867 -2.2724 8 1 5.8507 3.4601 -1.6775 9 8 5.4311 4.3111 -3.5291 10 6 4.1596 4.8362 -1.4996 11 1 3.5386 5.4100 -2.1877 12 7 5.0343 5.7286 -0.7350 13 6 5.5563 6.8247 -1.3202 14 8 5.3016 7.0725 -2.4798 15 6 6.4557 7.7430 -0.5335 16 1 5.9114 8.1368 0.3250 17 6 7.6801 6.9647 -0.0477 18 6 6.9009 8.8838 -1.4117 19 1 6.5664 8.9382 -2.4371 20 6 7.7361 9.8575 -0.9064 21 7 8.1250 10.8529 -1.6730 22 14 8.3152 9.7631 0.8671 23 1 9.5826 8.9921 0.9336 24 1 8.5426 11.1352 1.3873 25 1 7.2806 9.0868 1.6902 26 6 3.2810 3.9944 -0.5478 27 6 3.4805 1.4315 -0.2402 28 1 3.8710 0.5502 -0.7490 29 6 4.2970 1.8228 0.9932 30 6 4.4322 0.6130 1.9200 31 6 5.6874 2.2895 0.5575 32 1 -0.3633 0.5137 -0.8900 33 1 -0.3633 -1.0277 0.0005 34 1 -0.3633 0.5137 0.8901 35 1 1.8934 -0.5138 -0.8901 36 1 1.8934 -0.5138 0.8900 37 1 0.9802 2.7997 -1.2662 38 1 1.6365 1.3402 -2.1299 39 1 3.3428 2.8291 -3.3320 40 1 4.5192 1.6817 -2.6170 41 1 6.0008 5.0890 -3.4553 42 1 5.2377 5.5307 0.1926 43 1 8.3304 7.6288 0.5217 44 1 7.3577 6.1397 0.5877 45 1 8.2243 6.5709 -0.9061 46 1 8.7123 11.5381 -1.3173 47 1 3.7501 3.9273 0.4338 48 1 2.2904 4.4407 -0.4594 49 1 3.7917 2.6309 1.5221 50 1 4.9376 -0.1952 1.3912 51 1 5.0135 0.8918 2.7989 52 1 3.4417 0.2805 2.2304 53 1 6.1389 1.5345 -0.0861 54 1 5.6007 3.2283 0.0106 55 1 6.3131 2.4381 1.4375 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926243658.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:00 Heat of formation + Delta-G solvation = -87.729621 kcal Electronic energy + Delta-G solvation = -32153.817326 eV Core-core repulsion = 28190.195399 eV Total energy + Delta-G solvation = -3963.621927 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.42407 -40.68825 -38.48561 -36.17825 -35.75576 -35.57651 -34.57631 -33.24502 -32.01344 -29.28315 -28.14456 -27.68920 -27.07936 -26.70750 -25.01498 -24.09596 -22.23013 -21.56858 -21.36868 -21.18061 -19.25388 -18.79630 -18.45153 -17.78729 -17.37732 -16.75868 -16.52298 -16.27566 -15.92324 -15.67955 -15.55708 -15.26404 -15.02504 -14.80012 -14.58921 -14.26480 -14.05873 -13.99055 -13.59216 -13.47624 -13.40878 -13.33638 -13.17511 -12.95672 -12.81936 -12.77232 -12.75997 -12.48726 -12.29749 -12.20198 -12.11946 -12.06616 -11.83450 -11.61891 -11.45844 -11.35114 -11.30960 -11.18209 -10.94462 -10.89375 -10.75359 -10.40179 -9.81179 -9.66317 -8.24728 -6.32087 1.34471 1.41124 1.52034 1.85847 2.31109 2.36272 2.83037 3.09209 3.15735 3.30741 3.54290 3.76593 3.89108 4.02957 4.06924 4.10544 4.19378 4.22880 4.26860 4.33297 4.39275 4.42488 4.45578 4.49615 4.59901 4.62490 4.63606 4.69161 4.72451 4.79194 4.85190 4.87036 4.92099 4.95749 4.99675 5.02150 5.07479 5.08447 5.11755 5.15080 5.20111 5.26848 5.28511 5.35765 5.46924 5.47690 5.53634 5.55721 5.62074 5.65870 6.20094 6.28085 6.58158 6.72496 6.88832 7.29467 7.52810 8.92900 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018620 B = 0.002989 C = 0.002790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.437737 B = 9364.995427 C =10033.243620 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.016 3.984 3 N -0.478 5.478 4 C 0.016 3.984 5 C -0.074 4.074 6 C -0.096 4.096 7 C 0.080 3.920 8 H 0.080 0.920 9 O -0.582 6.582 10 C 0.109 3.891 11 H 0.065 0.935 12 N -0.716 5.716 13 C 0.528 3.472 14 O -0.574 6.574 15 C -0.009 4.009 16 H 0.066 0.934 17 C -0.140 4.140 18 C -0.517 4.517 19 H 0.032 0.968 20 C 0.005 3.995 21 N -0.954 5.954 22 Si 0.958 3.042 23 H -0.261 1.261 24 H -0.303 1.303 25 H -0.230 1.230 26 C -0.094 4.094 27 C 0.056 3.944 28 H 0.085 0.915 29 C -0.075 4.075 30 C -0.141 4.141 31 C -0.159 4.159 32 H 0.051 0.949 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.084 0.916 41 H 0.380 0.620 42 H 0.412 0.588 43 H 0.043 0.957 44 H 0.085 0.915 45 H 0.048 0.952 46 H 0.266 0.734 47 H 0.102 0.898 48 H 0.079 0.921 49 H 0.079 0.921 50 H 0.053 0.947 51 H 0.058 0.942 52 H 0.053 0.947 53 H 0.055 0.945 54 H 0.057 0.943 55 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.358 -27.700 10.562 31.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 N -0.201 5.201 4 C -0.112 4.112 5 C -0.075 4.075 6 C -0.135 4.135 7 C 0.020 3.980 8 H 0.098 0.902 9 O -0.389 6.389 10 C 0.004 3.996 11 H 0.084 0.916 12 N -0.370 5.370 13 C 0.316 3.684 14 O -0.452 6.452 15 C -0.030 4.030 16 H 0.084 0.916 17 C -0.197 4.197 18 C -0.555 4.555 19 H 0.050 0.950 20 C -0.191 4.191 21 N -0.594 5.594 22 Si 0.784 3.216 23 H -0.187 1.187 24 H -0.232 1.232 25 H -0.153 1.153 26 C -0.132 4.132 27 C -0.052 4.052 28 H 0.103 0.897 29 C -0.094 4.094 30 C -0.198 4.198 31 C -0.217 4.217 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.059 0.941 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.229 0.771 42 H 0.249 0.751 43 H 0.062 0.938 44 H 0.104 0.896 45 H 0.067 0.933 46 H 0.075 0.925 47 H 0.120 0.880 48 H 0.097 0.903 49 H 0.097 0.903 50 H 0.072 0.928 51 H 0.077 0.923 52 H 0.072 0.928 53 H 0.074 0.926 54 H 0.076 0.924 55 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.125 -27.633 10.108 31.824 hybrid contribution 1.105 0.812 -0.239 1.392 sum -11.020 -26.821 9.869 30.630 Atomic orbital electron populations 1.21695 0.94432 1.02072 1.02005 1.22631 0.96782 0.90507 1.01294 1.68572 1.06309 1.15194 1.29990 1.23946 0.96305 0.98897 0.92096 1.22132 0.95949 0.95025 0.94413 1.22192 0.96527 0.97147 0.97593 1.23654 0.96556 0.93395 0.84377 0.90210 1.86324 1.71560 1.49811 1.31251 1.22577 0.91945 0.90697 0.94401 0.91649 1.46051 1.50074 1.24854 1.16012 1.21053 0.79322 0.80781 0.87218 1.90587 1.61031 1.73976 1.19620 1.19256 0.94170 0.93322 0.96286 0.91620 1.22022 0.97477 0.99573 1.00633 1.21107 1.28856 1.07077 0.98481 0.95008 1.26029 0.95809 0.94292 1.03014 1.70088 1.36418 1.13965 1.38965 0.85725 0.80290 0.76388 0.79229 1.18671 1.23156 1.15308 1.22104 1.00110 0.92204 0.98780 1.23560 0.89949 0.96475 0.95255 0.89740 1.20942 0.95036 0.98654 0.94728 1.21770 1.01513 0.97386 0.99149 1.22079 0.96170 1.01486 1.01939 0.93017 0.91401 0.92590 0.94064 0.90376 0.89218 0.90289 0.90917 0.89711 0.77111 0.75098 0.93812 0.89582 0.93314 0.92537 0.88021 0.90251 0.90290 0.92783 0.92293 0.92840 0.92600 0.92414 0.91517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.57 9.97 71.98 0.72 -0.86 16 2 C 0.02 0.19 5.53 86.30 0.48 0.67 16 3 N -0.48 -6.61 6.06 -895.44 -5.42 -12.03 16 4 C 0.02 0.23 6.33 86.09 0.55 0.77 16 5 C -0.07 -1.17 0.78 -51.90 -0.04 -1.21 16 6 C -0.10 -1.88 5.93 31.47 0.19 -1.69 16 7 C 0.08 2.03 3.43 31.98 0.11 2.14 16 8 H 0.08 1.86 5.87 -2.39 -0.01 1.84 16 9 O -0.58 -19.88 13.43 -148.98 -2.00 -21.88 16 10 C 0.11 2.85 2.57 46.17 0.12 2.97 16 11 H 0.07 2.19 7.66 -2.38 -0.02 2.17 16 12 N -0.72 -20.27 4.85 -436.98 -2.12 -22.39 16 13 C 0.53 21.54 7.01 87.66 0.61 22.15 16 14 O -0.57 -28.95 13.56 -3.02 -0.04 -28.99 16 15 C -0.01 -0.38 2.23 -12.29 -0.03 -0.41 16 16 H 0.07 2.71 7.20 -2.38 -0.02 2.69 16 17 C -0.14 -5.02 8.57 71.98 0.62 -4.40 16 18 C -0.52 -30.23 8.96 25.60 0.23 -30.00 16 19 H 0.03 2.20 7.00 -2.91 -0.02 2.18 16 20 C 0.00 0.27 5.45 84.65 0.46 0.74 16 21 N -0.95 -61.08 13.96 21.45 0.30 -60.78 16 22 Si 0.96 42.58 24.37 68.60 1.67 44.26 16 23 H -0.26 -10.82 6.87 99.48 0.68 -10.14 16 24 H -0.30 -13.78 7.11 99.48 0.71 -13.07 16 25 H -0.23 -8.77 6.53 99.48 0.65 -8.12 16 26 C -0.09 -1.72 5.15 31.13 0.16 -1.56 16 27 C 0.06 0.75 2.21 44.71 0.10 0.85 16 28 H 0.08 1.07 7.58 -2.39 -0.02 1.06 16 29 C -0.07 -0.95 2.22 -10.79 -0.02 -0.97 16 30 C -0.14 -1.59 9.19 71.98 0.66 -0.92 16 31 C -0.16 -2.11 8.31 71.98 0.60 -1.51 16 32 H 0.05 0.59 7.54 -2.39 -0.02 0.57 16 33 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 34 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 35 H 0.04 0.46 7.70 -2.38 -0.02 0.44 16 36 H 0.08 0.87 7.38 -2.39 -0.02 0.86 16 37 H 0.09 1.34 7.86 -2.39 -0.02 1.32 16 38 H 0.08 1.02 7.78 -2.39 -0.02 1.00 16 39 H 0.07 1.58 8.12 -2.39 -0.02 1.56 16 40 H 0.08 1.44 7.80 -2.38 -0.02 1.42 16 41 H 0.38 14.30 7.29 -74.06 -0.54 13.76 16 42 H 0.41 8.85 7.54 -92.71 -0.70 8.15 16 43 H 0.04 1.63 3.27 -2.39 -0.01 1.63 16 44 H 0.09 2.17 7.56 -2.38 -0.02 2.15 16 45 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 46 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 47 H 0.10 1.60 4.11 -2.39 -0.01 1.59 16 48 H 0.08 1.48 7.74 -2.38 -0.02 1.46 16 49 H 0.08 1.11 6.45 -2.39 -0.02 1.10 16 50 H 0.05 0.57 8.14 -2.39 -0.02 0.55 16 51 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 52 H 0.05 0.63 7.37 -2.39 -0.02 0.61 16 53 H 0.05 0.74 8.13 -2.39 -0.02 0.72 16 54 H 0.06 0.88 3.16 -2.39 -0.01 0.87 16 55 H 0.07 0.80 8.13 -2.39 -0.02 0.78 16 Total: -1.00 -74.70 399.85 -2.53 -77.23 By element: Atomic # 1 Polarization: 38.27 SS G_CDS: -0.42 Total: 37.85 kcal Atomic # 6 Polarization: -18.77 SS G_CDS: 5.51 Total: -13.27 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -7.25 Total: -95.20 kcal Atomic # 8 Polarization: -48.83 SS G_CDS: -2.04 Total: -50.87 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.67 Total: 44.26 kcal Total: -74.70 -2.53 -77.23 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926243658.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.498 kcal (2) G-P(sol) polarization free energy of solvation -74.702 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds