Wall clock time and date at job start Wed Apr 1 2020 00:07:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46900 * 109.47253 * 2 1 4 4 C 1.48121 * 110.99827 * 289.53785 * 3 2 1 5 5 C 1.53075 * 85.91516 * 222.97934 * 4 3 2 6 6 C 1.53480 * 115.25366 * 139.92401 * 5 4 3 7 7 C 1.55080 * 103.95902 * 153.40292 * 6 5 4 8 8 H 1.08994 * 110.73639 * 81.12925 * 7 6 5 9 9 O 1.42907 * 110.73160 * 204.43442 * 7 6 5 10 10 C 1.54956 * 102.87363 * 322.77739 * 7 6 5 11 11 H 1.08997 * 110.59033 * 278.75963 * 10 7 6 12 12 N 1.46508 * 110.47567 * 156.19321 * 10 7 6 13 13 C 1.34774 * 119.99931 * 90.19192 * 12 10 7 14 14 O 1.21284 * 120.00242 * 359.97438 * 13 12 10 15 15 C 1.50698 * 120.00283 * 179.97438 * 13 12 10 16 16 H 1.09004 * 109.46605 * 59.99634 * 15 13 12 17 17 C 1.53001 * 109.47112 * 300.00232 * 15 13 12 18 18 C 1.50691 * 109.47306 * 179.97438 * 15 13 12 19 19 H 1.07996 * 120.00649 * 5.24807 * 18 15 13 20 20 C 1.37881 * 120.00226 * 185.24908 * 18 15 13 21 21 N 1.31508 * 120.00577 * 196.89305 * 20 18 15 22 22 Si 1.86803 * 119.99785 * 16.88717 * 20 18 15 23 23 H 1.48495 * 109.47447 * 180.02562 * 22 20 18 24 24 H 1.48504 * 109.47219 * 300.00535 * 22 20 18 25 25 H 1.48503 * 109.47070 * 59.99982 * 22 20 18 26 26 C 1.53097 * 115.48490 * 266.28669 * 5 4 3 27 27 C 1.48121 * 110.99985 * 189.99777 * 3 2 1 28 28 H 1.09008 * 113.80292 * 22.77509 * 27 3 2 29 29 C 1.52998 * 113.80579 * 251.26833 * 27 3 2 30 30 C 1.52995 * 109.46930 * 79.08577 * 29 27 3 31 31 C 1.53001 * 109.47141 * 199.08604 * 29 27 3 32 32 H 1.09001 * 109.47091 * 300.00203 * 1 2 3 33 33 H 1.09001 * 109.47388 * 60.00123 * 1 2 3 34 34 H 1.08998 * 109.47415 * 180.02562 * 1 2 3 35 35 H 1.09001 * 109.47091 * 239.99797 * 2 1 3 36 36 H 1.09009 * 109.47087 * 120.00066 * 2 1 3 37 37 H 1.08998 * 113.80750 * 108.72869 * 4 3 2 38 38 H 1.09007 * 113.80129 * 337.22614 * 4 3 2 39 39 H 1.09006 * 110.52739 * 272.01754 * 6 5 4 40 40 H 1.08998 * 110.52797 * 34.77991 * 6 5 4 41 41 H 0.96697 * 114.00190 * 174.90781 * 9 7 6 42 42 H 0.96992 * 119.99893 * 270.18664 * 12 10 7 43 43 H 1.09003 * 109.46886 * 58.60852 * 17 15 13 44 44 H 1.08999 * 109.47017 * 178.60449 * 17 15 13 45 45 H 1.08994 * 109.46875 * 298.60689 * 17 15 13 46 46 H 0.97002 * 119.99766 * 354.88988 * 21 20 18 47 47 H 1.09006 * 110.09815 * 110.83898 * 26 5 4 48 48 H 1.08994 * 110.15141 * 349.25767 * 26 5 4 49 49 H 1.08999 * 109.46629 * 319.08224 * 29 27 3 50 50 H 1.08998 * 109.47258 * 60.00514 * 30 29 27 51 51 H 1.09010 * 109.47113 * 180.02562 * 30 29 27 52 52 H 1.09002 * 109.47486 * 299.99789 * 30 29 27 53 53 H 1.08998 * 109.47129 * 67.38361 * 31 29 27 54 54 H 1.08998 * 109.47161 * 187.38365 * 31 29 27 55 55 H 1.09000 * 109.46897 * 307.38270 * 31 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7606 2.0396 -1.3032 5 6 3.1784 2.6029 -1.1782 6 6 3.9913 2.6251 -2.4798 7 6 4.9980 3.7864 -2.2724 8 1 5.8491 3.4575 -1.6763 9 8 5.4313 4.3109 -3.5292 10 6 4.1598 4.8360 -1.4997 11 1 3.5372 5.4100 -2.1860 12 7 5.0347 5.7283 -0.7349 13 6 5.4961 6.8634 -1.2962 14 8 5.1875 7.1460 -2.4346 15 6 6.3955 7.7815 -0.5094 16 1 7.2990 7.2447 -0.2200 17 6 5.6631 8.2609 0.7454 18 6 6.7679 8.9692 -1.3589 19 1 6.3247 9.0948 -2.3357 20 6 7.6746 9.8957 -0.8892 21 7 7.7569 11.0804 -1.4542 22 14 8.7861 9.4682 0.5500 23 1 9.6623 10.6263 0.8599 24 1 7.9556 9.1446 1.7379 25 1 9.6235 8.2937 0.1969 26 6 3.2811 3.9943 -0.5478 27 6 3.4806 1.4315 -0.2401 28 1 3.8711 0.5500 -0.7488 29 6 4.2970 1.8227 0.9933 30 6 4.4422 0.6097 1.9144 31 6 5.6833 2.3005 0.5568 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8900 34 1 -0.3634 -1.0276 0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 0.9803 2.7997 -1.2664 38 1 1.6366 1.3400 -2.1299 39 1 4.5194 1.6814 -2.6168 40 1 3.3430 2.8288 -3.3320 41 1 6.0009 5.0887 -3.4554 42 1 5.2818 5.5021 0.1753 43 1 5.3724 7.4000 1.3476 44 1 6.3223 8.9052 1.3271 45 1 4.7728 8.8188 0.4555 46 1 7.2335 11.2770 -2.2469 47 1 3.7501 3.9272 0.4339 48 1 2.2906 4.4406 -0.4596 49 1 3.7873 2.6251 1.5267 50 1 4.9519 -0.1926 1.3810 51 1 5.0235 0.8886 2.7935 52 1 3.4546 0.2693 2.2255 53 1 5.5887 3.2386 0.0099 54 1 6.3083 2.4542 1.4364 55 1 6.1405 1.5491 -0.0870 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000926243660.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 00:07:04 Heat of formation + Delta-G solvation = -95.471913 kcal Electronic energy + Delta-G solvation = -32081.781563 eV Core-core repulsion = 28117.823905 eV Total energy + Delta-G solvation = -3963.957658 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.44631 -40.69330 -38.53788 -36.20985 -35.76771 -35.58886 -34.61179 -33.14194 -32.00241 -29.29304 -28.15004 -27.69857 -26.77751 -26.71850 -24.85390 -24.01691 -22.22611 -21.56386 -21.37528 -21.18808 -19.49216 -19.28613 -18.45281 -17.71155 -17.58745 -16.63930 -16.48417 -16.15132 -15.72701 -15.58252 -15.56359 -15.21835 -15.03815 -14.86954 -14.52338 -14.31837 -13.99683 -13.87118 -13.59955 -13.45217 -13.41292 -13.34782 -13.16796 -12.98746 -12.95908 -12.78489 -12.71260 -12.35825 -12.32375 -12.22311 -12.10119 -11.90304 -11.85465 -11.63336 -11.54878 -11.37206 -11.33258 -10.97454 -10.93533 -10.91039 -10.58449 -10.27618 -9.84150 -9.67685 -8.74893 -6.33831 1.48921 1.59938 1.76231 1.84339 2.30643 2.56025 2.81128 3.11181 3.12234 3.28448 3.51452 3.74548 3.86703 4.00926 4.05620 4.11342 4.18001 4.21351 4.25937 4.31810 4.37608 4.41189 4.48145 4.49092 4.58228 4.60158 4.67601 4.70435 4.70958 4.82851 4.85174 4.86282 4.90505 4.93927 4.98384 5.02511 5.06952 5.07906 5.13388 5.18500 5.18735 5.24947 5.27399 5.34942 5.45875 5.52567 5.55152 5.59447 5.64278 5.88190 6.08146 6.18840 6.53362 6.64214 6.75947 7.43605 7.52170 8.65947 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018133 B = 0.002976 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1543.743943 B = 9405.254879 C = 9992.004656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.016 3.984 3 N -0.478 5.478 4 C 0.016 3.984 5 C -0.075 4.075 6 C -0.096 4.096 7 C 0.080 3.920 8 H 0.082 0.918 9 O -0.581 6.581 10 C 0.108 3.892 11 H 0.063 0.937 12 N -0.716 5.716 13 C 0.525 3.475 14 O -0.581 6.581 15 C -0.004 4.004 16 H 0.069 0.931 17 C -0.141 4.141 18 C -0.596 4.596 19 H 0.014 0.986 20 C -0.027 4.027 21 N -0.941 5.941 22 Si 1.087 2.913 23 H -0.295 1.295 24 H -0.223 1.223 25 H -0.259 1.259 26 C -0.095 4.095 27 C 0.057 3.943 28 H 0.086 0.914 29 C -0.075 4.075 30 C -0.141 4.141 31 C -0.159 4.159 32 H 0.055 0.945 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.379 0.621 42 H 0.412 0.588 43 H 0.078 0.922 44 H 0.063 0.937 45 H 0.029 0.971 46 H 0.246 0.754 47 H 0.102 0.898 48 H 0.076 0.924 49 H 0.078 0.922 50 H 0.054 0.946 51 H 0.059 0.941 52 H 0.052 0.948 53 H 0.056 0.944 54 H 0.067 0.933 55 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.217 -28.713 10.045 32.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 N -0.201 5.201 4 C -0.113 4.113 5 C -0.076 4.076 6 C -0.134 4.134 7 C 0.020 3.980 8 H 0.100 0.900 9 O -0.388 6.388 10 C 0.003 3.997 11 H 0.082 0.918 12 N -0.370 5.370 13 C 0.314 3.686 14 O -0.460 6.460 15 C -0.026 4.026 16 H 0.086 0.914 17 C -0.199 4.199 18 C -0.634 4.634 19 H 0.033 0.967 20 C -0.223 4.223 21 N -0.577 5.577 22 Si 0.906 3.094 23 H -0.222 1.222 24 H -0.147 1.147 25 H -0.184 1.184 26 C -0.132 4.132 27 C -0.052 4.052 28 H 0.104 0.896 29 C -0.094 4.094 30 C -0.198 4.198 31 C -0.217 4.217 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.098 0.902 39 H 0.105 0.895 40 H 0.090 0.910 41 H 0.228 0.772 42 H 0.249 0.751 43 H 0.097 0.903 44 H 0.082 0.918 45 H 0.048 0.952 46 H 0.055 0.945 47 H 0.120 0.880 48 H 0.095 0.905 49 H 0.096 0.904 50 H 0.073 0.927 51 H 0.078 0.922 52 H 0.071 0.929 53 H 0.075 0.925 54 H 0.086 0.914 55 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.988 -28.147 10.618 31.698 hybrid contribution -0.641 0.190 -2.257 2.354 sum -10.629 -27.957 8.361 31.056 Atomic orbital electron populations 1.21696 0.94458 1.02087 1.01978 1.22632 0.96765 0.90469 1.01338 1.68570 1.06341 1.15237 1.29941 1.23941 0.96278 0.98889 0.92156 1.22137 0.95970 0.95010 0.94446 1.22194 0.96510 0.97168 0.97567 1.23663 0.96634 0.93360 0.84338 0.90004 1.86336 1.71509 1.49676 1.31251 1.22569 0.92016 0.90707 0.94418 0.91833 1.46071 1.50791 1.21949 1.18145 1.21260 0.79620 0.80996 0.86768 1.90576 1.59539 1.74743 1.21096 1.19170 0.95067 0.93746 0.94597 0.91372 1.22109 1.00010 1.01420 0.96373 1.22054 1.27743 1.09993 1.03600 0.96721 1.27523 0.98109 0.91359 1.05337 1.70992 1.44693 1.20974 1.21075 0.83642 0.75241 0.76354 0.74146 1.22199 1.14662 1.18388 1.22109 1.00007 0.92243 0.98854 1.23562 0.89942 0.96430 0.95250 0.89639 1.20939 0.95050 0.98640 0.94745 1.21770 1.01517 0.97327 0.99191 1.22088 0.96225 1.01393 1.01989 0.92609 0.93069 0.91354 0.94022 0.90315 0.89358 0.90241 0.89543 0.90995 0.77248 0.75052 0.90287 0.91841 0.95188 0.94518 0.87971 0.90519 0.90356 0.92723 0.92237 0.92855 0.92543 0.91428 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.60 9.97 71.98 0.72 -0.88 16 2 C 0.02 0.19 5.53 86.30 0.48 0.67 16 3 N -0.48 -6.70 6.06 -895.56 -5.43 -12.13 16 4 C 0.02 0.23 6.33 86.09 0.55 0.78 16 5 C -0.07 -1.19 0.77 -51.90 -0.04 -1.23 16 6 C -0.10 -1.88 5.93 31.47 0.19 -1.70 16 7 C 0.08 2.03 3.44 31.98 0.11 2.14 16 8 H 0.08 1.88 5.86 -2.39 -0.01 1.87 16 9 O -0.58 -19.61 13.45 -148.98 -2.00 -21.61 16 10 C 0.11 2.89 2.63 46.16 0.12 3.01 16 11 H 0.06 2.20 7.55 -2.39 -0.02 2.18 16 12 N -0.72 -20.76 4.84 -436.98 -2.11 -22.87 16 13 C 0.52 21.91 7.04 87.66 0.62 22.53 16 14 O -0.58 -30.06 13.97 -3.04 -0.04 -30.10 16 15 C 0.00 -0.17 2.22 -12.29 -0.03 -0.20 16 16 H 0.07 2.71 6.83 -2.39 -0.02 2.69 16 17 C -0.14 -5.31 8.78 71.98 0.63 -4.68 16 18 C -0.60 -34.87 8.64 25.60 0.22 -34.65 16 19 H 0.01 1.00 7.01 -2.91 -0.02 0.98 16 20 C -0.03 -1.57 5.34 84.66 0.45 -1.12 16 21 N -0.94 -60.67 13.69 21.45 0.29 -60.38 16 22 Si 1.09 46.84 26.37 68.60 1.81 48.65 16 23 H -0.30 -13.25 7.11 99.48 0.71 -12.54 16 24 H -0.22 -7.85 5.50 99.48 0.55 -7.30 16 25 H -0.26 -10.11 7.11 99.48 0.71 -9.40 16 26 C -0.09 -1.78 5.16 31.13 0.16 -1.62 16 27 C 0.06 0.76 2.22 44.71 0.10 0.86 16 28 H 0.09 1.07 7.58 -2.38 -0.02 1.06 16 29 C -0.08 -0.95 2.22 -10.80 -0.02 -0.98 16 30 C -0.14 -1.57 9.19 71.98 0.66 -0.91 16 31 C -0.16 -2.10 8.27 71.98 0.60 -1.51 16 32 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.05 0.60 7.54 -2.39 -0.02 0.58 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.04 0.46 7.70 -2.39 -0.02 0.44 16 36 H 0.08 0.88 7.38 -2.38 -0.02 0.86 16 37 H 0.09 1.37 7.86 -2.39 -0.02 1.35 16 38 H 0.08 1.04 7.78 -2.38 -0.02 1.02 16 39 H 0.09 1.45 7.80 -2.38 -0.02 1.44 16 40 H 0.07 1.57 8.12 -2.39 -0.02 1.55 16 41 H 0.38 13.93 7.82 -74.06 -0.58 13.36 16 42 H 0.41 9.09 7.41 -92.71 -0.69 8.40 16 43 H 0.08 2.13 7.53 -2.39 -0.02 2.11 16 44 H 0.06 2.40 4.67 -2.39 -0.01 2.39 16 45 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 46 H 0.25 16.49 8.73 -92.71 -0.81 15.69 16 47 H 0.10 1.67 4.12 -2.38 -0.01 1.66 16 48 H 0.08 1.50 7.74 -2.39 -0.02 1.49 16 49 H 0.08 1.12 6.48 -2.39 -0.02 1.10 16 50 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 51 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 52 H 0.05 0.63 7.38 -2.39 -0.02 0.61 16 53 H 0.06 0.86 2.97 -2.39 -0.01 0.86 16 54 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 55 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -75.86 402.60 -2.54 -78.40 By element: Atomic # 1 Polarization: 40.09 SS G_CDS: -0.56 Total: 39.53 kcal Atomic # 6 Polarization: -24.99 SS G_CDS: 5.51 Total: -19.48 kcal Atomic # 7 Polarization: -88.13 SS G_CDS: -7.24 Total: -95.38 kcal Atomic # 8 Polarization: -49.67 SS G_CDS: -2.05 Total: -51.71 kcal Atomic # 14 Polarization: 46.84 SS G_CDS: 1.81 Total: 48.65 kcal Total: -75.86 -2.54 -78.40 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000926243660.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.072 kcal (2) G-P(sol) polarization free energy of solvation -75.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds