Wall clock time and date at job start Tue Mar 31 2020 23:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.46993 * 2 1 4 4 C 1.50702 * 109.46973 * 119.99377 * 2 1 3 5 5 O 1.21287 * 119.99372 * 105.59998 * 4 2 1 6 6 N 1.34775 * 120.00510 * 285.59535 * 4 2 1 7 7 C 1.46495 * 119.99694 * 0.02562 * 6 4 2 8 8 C 1.46494 * 120.00197 * 180.02562 * 6 4 2 9 9 C 1.50700 * 109.47353 * 89.99796 * 8 6 4 10 10 H 1.07997 * 119.99479 * 0.02562 * 9 8 6 11 11 C 1.37871 * 120.00228 * 179.97438 * 9 8 6 12 12 N 1.31522 * 120.00271 * 0.02562 * 11 9 8 13 13 Si 1.86804 * 120.00247 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47242 * 89.99979 * 13 11 9 15 15 H 1.48494 * 109.47078 * 210.00279 * 13 11 9 16 16 H 1.48501 * 109.46601 * 330.00141 * 13 11 9 17 17 N 1.46900 * 109.47080 * 239.99536 * 2 1 3 18 18 C 1.46843 * 110.99791 * 73.82775 * 17 2 1 19 19 C 1.53041 * 109.51482 * 174.16751 * 18 17 2 20 20 C 1.53091 * 109.28826 * 59.18327 * 19 18 17 21 21 C 1.53124 * 109.15857 * 302.33864 * 20 19 18 22 22 H 1.08993 * 109.53157 * 297.69778 * 21 20 19 23 23 C 1.53001 * 109.50306 * 177.59621 * 21 20 19 24 24 C 1.53169 * 109.54197 * 179.75573 * 23 21 20 25 25 C 1.53093 * 109.16369 * 183.15130 * 24 23 21 26 26 O 1.42901 * 109.41355 * 57.61091 * 25 24 23 27 27 C 1.42904 * 114.09563 * 298.84321 * 26 25 24 28 28 C 1.53089 * 109.41849 * 61.15717 * 27 26 25 29 29 C 1.46850 * 111.00008 * 309.61881 * 17 2 1 30 30 H 1.09004 * 109.46930 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47004 * 300.00421 * 1 2 3 32 32 H 1.08993 * 109.47114 * 60.00406 * 1 2 3 33 33 H 1.08997 * 109.47358 * 89.99574 * 7 6 4 34 34 H 1.09000 * 109.47582 * 210.00077 * 7 6 4 35 35 H 1.09006 * 109.47600 * 329.99942 * 7 6 4 36 36 H 1.09004 * 109.47315 * 210.00165 * 8 6 4 37 37 H 1.09005 * 109.47083 * 330.00329 * 8 6 4 38 38 H 0.96992 * 119.99997 * 179.97438 * 12 11 9 39 39 H 1.09001 * 109.46364 * 294.17776 * 18 17 2 40 40 H 1.09001 * 109.46478 * 54.15530 * 18 17 2 41 41 H 1.08995 * 109.50562 * 179.12133 * 19 18 17 42 42 H 1.09000 * 109.49846 * 299.23369 * 19 18 17 43 43 H 1.09009 * 109.52478 * 182.43757 * 20 19 18 44 44 H 1.08998 * 109.52587 * 62.24926 * 20 19 18 45 45 H 1.09005 * 109.53972 * 300.02203 * 23 21 20 46 46 H 1.08999 * 109.52718 * 303.05965 * 24 23 21 47 47 H 1.09002 * 109.52301 * 63.24767 * 24 23 21 48 48 H 1.08997 * 109.48257 * 297.62657 * 25 24 23 49 49 H 1.09005 * 109.49067 * 177.59284 * 25 24 23 50 50 H 1.09001 * 109.47749 * 301.17156 * 27 26 25 51 51 H 1.09006 * 109.49084 * 181.14693 * 27 26 25 52 52 H 1.08998 * 109.52187 * 182.48657 * 28 27 26 53 53 H 1.09002 * 109.57296 * 62.33004 * 28 27 26 54 54 H 1.09001 * 109.46101 * 305.85719 * 29 17 2 55 55 H 1.09002 * 109.46119 * 65.82152 * 29 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.5008 -1.8252 1.1383 6 7 1.9612 -0.1066 2.4335 7 6 1.3949 1.2399 2.5448 8 6 2.4500 -0.7969 3.6295 9 6 3.9076 -0.4743 3.8353 10 1 4.4186 0.1798 3.1444 11 6 4.5885 -1.0135 4.9061 12 7 3.9661 -1.8097 5.7478 13 14 6.3951 -0.6130 5.1616 14 1 6.5183 0.5982 6.0119 15 1 7.0660 -1.7571 5.8296 16 1 7.0372 -0.3619 3.8463 17 7 2.0197 -0.6926 -1.1994 18 6 1.8351 0.1359 -2.3976 19 6 2.4852 -0.5523 -3.6001 20 6 1.8434 -1.9272 -3.8038 21 6 2.0071 -2.7527 -2.5246 22 1 3.0672 -2.9082 -2.3245 23 6 1.3161 -4.1067 -2.6984 24 6 1.4846 -4.9356 -1.4215 25 6 0.8589 -6.3168 -1.6327 26 8 1.4743 -6.9502 -2.7561 27 6 1.3086 -6.2439 -3.9873 28 6 1.9523 -4.8599 -3.8707 29 6 1.3709 -2.0010 -1.3533 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5137 -0.8900 33 1 0.3215 1.1693 2.7202 34 1 1.8653 1.7643 3.3766 35 1 1.5767 1.7882 1.6204 36 1 1.8789 -0.4680 4.4978 37 1 2.3305 -1.8729 3.5024 38 1 4.4452 -2.1893 6.5008 39 1 0.7699 0.2683 -2.5871 40 1 2.2999 1.1094 -2.2413 41 1 2.3345 0.0552 -4.4924 42 1 3.5529 -0.6726 -3.4171 43 1 2.3331 -2.4387 -4.6326 44 1 0.7831 -1.8051 -4.0254 45 1 0.2555 -3.9518 -2.8970 46 1 2.5454 -5.0468 -1.1967 47 1 0.9864 -4.4329 -0.5925 48 1 -0.2097 -6.2074 -1.8174 49 1 1.0135 -6.9261 -0.7422 50 1 0.2458 -6.1336 -4.2028 51 1 1.7870 -6.8006 -4.7932 52 1 1.7885 -4.3031 -4.7933 53 1 3.0227 -4.9685 -3.6960 54 1 1.4983 -2.5794 -0.4383 55 1 0.3078 -1.8585 -1.5476 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000933079445.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:50:41 Heat of formation + Delta-G solvation = -109.836884 kcal Electronic energy + Delta-G solvation = -31856.694125 eV Core-core repulsion = 27892.113555 eV Total energy + Delta-G solvation = -3964.580570 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.50625 -40.50935 -39.20524 -36.58744 -36.34012 -34.79711 -34.13169 -32.14582 -30.98273 -30.84397 -29.41851 -27.44321 -26.37573 -26.00625 -25.31596 -24.24151 -23.11124 -22.60727 -20.95214 -20.45889 -19.77877 -18.69803 -17.87914 -17.45210 -17.05461 -16.93013 -16.62201 -16.36573 -16.06036 -15.77710 -15.63153 -15.22693 -15.12503 -14.84016 -14.69942 -14.60317 -14.32100 -13.95895 -13.87056 -13.68947 -13.46280 -13.27184 -13.18549 -13.17126 -12.95605 -12.85450 -12.69802 -12.59965 -12.46021 -12.34526 -12.25908 -12.20123 -11.88041 -11.72900 -11.69139 -11.47501 -11.36518 -11.08665 -10.96443 -10.64799 -10.38530 -10.23964 -9.39031 -9.07596 -8.22973 -6.37628 1.34120 1.37690 1.47958 1.89605 2.28383 2.41053 2.95488 3.03494 3.06180 3.62835 3.66495 3.78453 3.84372 3.99346 4.04070 4.08302 4.13159 4.17667 4.20334 4.31206 4.39875 4.43194 4.43795 4.50439 4.57966 4.61995 4.67239 4.73869 4.76047 4.77824 4.78466 4.80183 4.88699 4.92740 4.94991 5.01663 5.04657 5.08359 5.13375 5.15242 5.16782 5.20011 5.22006 5.23355 5.41004 5.46475 5.57476 5.60094 5.86318 6.06848 6.11514 6.27137 6.31838 6.70748 6.85023 7.29074 7.57269 8.83704 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010772 B = 0.003316 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.775889 B = 8442.580014 C = 9752.896761 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.076 3.924 3 H 0.118 0.882 4 C 0.501 3.499 5 O -0.578 6.578 6 N -0.612 5.612 7 C 0.078 3.922 8 C 0.264 3.736 9 C -0.541 4.541 10 H 0.050 0.950 11 C 0.008 3.992 12 N -0.928 5.928 13 Si 0.966 3.034 14 H -0.261 1.261 15 H -0.280 1.280 16 H -0.276 1.276 17 N -0.541 5.541 18 C 0.054 3.946 19 C -0.114 4.114 20 C -0.108 4.108 21 C -0.071 4.071 22 H 0.044 0.956 23 C -0.073 4.073 24 C -0.150 4.150 25 C 0.064 3.936 26 O -0.407 6.407 27 C 0.055 3.945 28 C -0.144 4.144 29 C 0.059 3.941 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.091 0.909 36 H 0.022 0.978 37 H -0.005 1.005 38 H 0.267 0.733 39 H 0.050 0.950 40 H 0.079 0.921 41 H 0.092 0.908 42 H 0.051 0.949 43 H 0.077 0.923 44 H 0.073 0.927 45 H 0.083 0.917 46 H 0.043 0.957 47 H 0.061 0.939 48 H 0.066 0.934 49 H 0.089 0.911 50 H 0.064 0.936 51 H 0.106 0.894 52 H 0.099 0.901 53 H 0.054 0.946 54 H 0.064 0.936 55 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.564 3.148 -22.952 25.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.036 4.036 3 H 0.135 0.865 4 C 0.289 3.711 5 O -0.457 6.457 6 N -0.344 5.344 7 C -0.064 4.064 8 C 0.142 3.858 9 C -0.580 4.580 10 H 0.068 0.932 11 C -0.191 4.191 12 N -0.568 5.568 13 Si 0.790 3.210 14 H -0.186 1.186 15 H -0.206 1.206 16 H -0.201 1.201 17 N -0.266 5.266 18 C -0.073 4.073 19 C -0.152 4.152 20 C -0.146 4.146 21 C -0.090 4.090 22 H 0.063 0.937 23 C -0.092 4.092 24 C -0.188 4.188 25 C -0.012 4.012 26 O -0.327 6.327 27 C -0.021 4.021 28 C -0.182 4.182 29 C -0.068 4.068 30 H 0.068 0.932 31 H 0.097 0.903 32 H 0.111 0.889 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.109 0.891 36 H 0.040 0.960 37 H 0.013 0.987 38 H 0.076 0.924 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.110 0.890 42 H 0.069 0.931 43 H 0.095 0.905 44 H 0.091 0.909 45 H 0.101 0.899 46 H 0.062 0.938 47 H 0.079 0.921 48 H 0.084 0.916 49 H 0.107 0.893 50 H 0.083 0.917 51 H 0.124 0.876 52 H 0.117 0.883 53 H 0.073 0.927 54 H 0.082 0.918 55 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.698 2.238 -22.750 25.239 hybrid contribution 0.362 0.195 1.116 1.189 sum -10.336 2.433 -21.634 24.100 Atomic orbital electron populations 1.22328 0.93236 1.02734 1.04677 1.21580 0.95648 0.98268 0.88088 0.86457 1.21207 0.78414 0.86363 0.85123 1.90582 1.47030 1.22160 1.85959 1.48151 1.60475 1.18127 1.07630 1.21973 0.98600 0.82147 1.03700 1.18677 0.93408 0.91538 0.82174 1.21697 0.96683 1.29347 1.10225 0.93194 1.25839 1.03210 0.94596 0.95453 1.70048 1.38572 1.32715 1.15476 0.85442 0.79024 0.78318 0.78192 1.18582 1.20588 1.20058 1.61662 1.58971 1.03873 1.02072 1.22231 0.99704 0.96332 0.89029 1.21578 0.99752 0.96549 0.97305 1.21643 1.01469 0.95185 0.96274 1.21102 0.98817 0.94002 0.95052 0.93726 1.21133 1.00320 0.93535 0.94246 1.22210 1.00886 0.96910 0.98827 1.22590 0.96489 0.92966 0.89201 1.87895 1.77820 1.49457 1.17513 1.22790 1.00691 0.92545 0.86069 1.22240 1.00153 0.96573 0.99193 1.22259 0.95129 0.89950 0.99454 0.93205 0.90251 0.88898 0.91005 0.91671 0.89102 0.95991 0.98661 0.92432 0.93158 0.90225 0.88952 0.93057 0.90450 0.90852 0.89895 0.93776 0.92068 0.91578 0.89280 0.91747 0.87594 0.88307 0.92709 0.91804 0.94248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.77 8.26 71.98 0.59 -3.18 16 2 C 0.08 2.22 1.92 44.17 0.08 2.30 16 3 H 0.12 2.94 6.38 -2.39 -0.02 2.92 16 4 C 0.50 21.36 6.83 87.66 0.60 21.96 16 5 O -0.58 -30.63 13.67 -3.05 -0.04 -30.67 16 6 N -0.61 -26.47 2.86 -851.14 -2.43 -28.90 16 7 C 0.08 2.33 9.26 127.77 1.18 3.52 16 8 C 0.26 14.59 5.16 85.63 0.44 15.03 16 9 C -0.54 -32.14 9.39 25.60 0.24 -31.90 16 10 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 11 C 0.01 0.46 5.46 84.65 0.46 0.93 16 12 N -0.93 -57.34 13.29 21.45 0.28 -57.06 16 13 Si 0.97 46.23 29.54 68.60 2.03 48.26 16 14 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 15 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 16 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 17 N -0.54 -15.71 4.39 -875.50 -3.84 -19.55 16 18 C 0.05 1.08 5.19 86.33 0.45 1.52 16 19 C -0.11 -2.03 6.09 30.64 0.19 -1.85 16 20 C -0.11 -1.87 4.86 30.67 0.15 -1.72 16 21 C -0.07 -1.74 1.94 -10.74 -0.02 -1.76 16 22 H 0.04 1.40 8.14 -2.39 -0.02 1.39 16 23 C -0.07 -1.58 1.86 -10.68 -0.02 -1.60 16 24 C -0.15 -4.10 4.98 30.68 0.15 -3.95 16 25 C 0.06 1.51 6.84 72.01 0.49 2.00 16 26 O -0.41 -10.08 10.77 -148.98 -1.60 -11.68 16 27 C 0.06 0.96 6.84 72.01 0.49 1.45 16 28 C -0.14 -2.59 4.98 30.68 0.15 -2.44 16 29 C 0.06 1.72 3.17 86.32 0.27 1.99 16 30 H 0.05 1.26 6.44 -2.38 -0.02 1.24 16 31 H 0.08 1.60 6.25 -2.39 -0.01 1.58 16 32 H 0.09 1.49 6.97 -2.39 -0.02 1.47 16 33 H 0.07 1.75 7.35 -2.39 -0.02 1.74 16 34 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 35 H 0.09 2.08 6.07 -2.38 -0.01 2.07 16 36 H 0.02 1.23 8.07 -2.39 -0.02 1.21 16 37 H 0.00 -0.30 7.42 -2.38 -0.02 -0.32 16 38 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 39 H 0.05 0.82 7.02 -2.39 -0.02 0.81 16 40 H 0.08 1.46 7.98 -2.39 -0.02 1.44 16 41 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.08 1.13 6.66 -2.38 -0.02 1.12 16 44 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.08 1.53 8.14 -2.38 -0.02 1.52 16 46 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 47 H 0.06 1.86 6.65 -2.39 -0.02 1.85 16 48 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.09 2.10 8.14 -2.38 -0.02 2.08 16 50 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 51 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 52 H 0.10 1.27 6.69 -2.39 -0.02 1.26 16 53 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 54 H 0.06 2.44 4.09 -2.39 -0.01 2.43 16 55 H 0.04 0.99 6.57 -2.39 -0.02 0.98 16 Total: -1.00 -78.32 403.23 1.16 -77.16 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.85 Total: 20.12 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 5.91 Total: 2.32 kcal Atomic # 7 Polarization: -99.51 SS G_CDS: -5.99 Total: -105.50 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -1.65 Total: -42.35 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 2.03 Total: 48.26 kcal Total: -78.32 1.16 -77.16 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000933079445.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.672 kcal (2) G-P(sol) polarization free energy of solvation -78.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.996 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds