Wall clock time and date at job start Tue Mar 31 2020 23:39:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09001 * 109.47191 * 2 1 4 4 O 1.42904 * 109.47113 * 240.00655 * 2 1 3 5 5 C 1.42899 * 114.00383 * 90.09183 * 4 2 1 6 6 C 1.54238 * 108.89361 * 213.66235 * 5 4 2 7 7 C 1.50554 * 108.48266 * 159.17921 * 6 5 4 8 8 C 1.54064 * 112.41631 * 94.26283 * 7 6 5 9 9 C 1.54067 * 112.81734 * 318.28390 * 8 7 6 10 10 C 1.50472 * 112.49159 * 318.28117 * 9 8 7 11 11 C 1.45542 * 108.89354 * 90.87204 * 5 4 2 12 12 C 1.50698 * 109.47332 * 120.00224 * 2 1 3 13 13 O 1.21279 * 120.00143 * 113.11894 * 12 2 1 14 14 N 1.34773 * 119.99843 * 293.12163 * 12 2 1 15 15 C 1.47297 * 125.79168 * 175.23281 * 14 12 2 16 16 C 1.54322 * 107.30675 * 178.92367 * 15 14 12 17 17 C 1.55154 * 102.94219 * 337.82291 * 16 15 14 18 18 H 1.08997 * 111.00563 * 277.42362 * 17 16 15 19 19 N 1.46500 * 111.00488 * 153.57192 * 17 16 15 20 20 C 1.46495 * 120.00211 * 307.80346 * 19 17 16 21 21 C 1.36943 * 119.99877 * 127.80389 * 19 17 16 22 22 H 1.07989 * 120.00111 * 21.84320 * 21 19 17 23 23 C 1.38812 * 119.99536 * 201.84868 * 21 19 17 24 24 N 1.31616 * 120.00335 * 12.17348 * 23 21 19 25 25 Si 1.86801 * 119.99576 * 192.17774 * 23 21 19 26 26 H 1.48507 * 109.47053 * 89.99798 * 25 23 21 27 27 H 1.48498 * 109.47237 * 209.99506 * 25 23 21 28 28 H 1.48500 * 109.47118 * 329.99805 * 25 23 21 29 29 C 1.47422 * 125.65367 * 355.23864 * 14 12 2 30 30 H 1.08997 * 109.46889 * 296.15731 * 1 2 3 31 31 H 1.09001 * 109.47480 * 56.15686 * 1 2 3 32 32 H 1.08998 * 109.46969 * 176.15530 * 1 2 3 33 33 H 1.08997 * 108.86957 * 332.26454 * 5 4 2 34 34 H 1.09003 * 109.63178 * 278.97471 * 6 5 4 35 35 H 1.09003 * 109.63072 * 39.55323 * 6 5 4 36 36 H 1.09009 * 108.92138 * 333.50864 * 7 6 5 37 37 H 1.08997 * 108.83701 * 214.96632 * 7 6 5 38 38 H 1.09003 * 108.81390 * 197.42042 * 8 7 6 39 39 H 1.09005 * 108.80998 * 79.14438 * 8 7 6 40 40 H 1.08999 * 108.87394 * 197.50776 * 9 8 7 41 41 H 1.08996 * 108.87533 * 79.05994 * 9 8 7 42 42 H 1.08997 * 109.63368 * 334.44535 * 10 9 8 43 43 H 1.09008 * 109.78397 * 213.95848 * 10 9 8 44 44 H 1.09000 * 108.89420 * 303.44175 * 11 5 4 45 45 H 1.08999 * 108.89760 * 62.03240 * 11 5 4 46 46 H 1.09010 * 109.85070 * 59.50388 * 15 14 12 47 47 H 1.08998 * 110.00560 * 298.43471 * 15 14 12 48 48 H 1.09001 * 110.72203 * 219.45441 * 16 15 14 49 49 H 1.09006 * 110.86931 * 96.25193 * 16 15 14 50 50 H 1.09002 * 109.47144 * 95.23993 * 20 19 17 51 51 H 1.08999 * 109.47386 * 215.23512 * 20 19 17 52 52 H 1.09003 * 109.47061 * 335.24116 * 20 19 17 53 53 H 0.97008 * 119.99821 * 179.97438 * 24 23 21 54 54 H 1.08999 * 110.36730 * 85.25768 * 29 14 12 55 55 H 1.09005 * 110.36320 * 323.04816 * 29 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6735 -1.1669 5 6 2.2021 0.1834 -2.2935 6 6 1.8770 -0.6017 -3.5807 7 6 1.5821 0.3843 -4.6796 8 6 2.8253 0.7034 -5.5317 9 6 4.1006 0.8796 -4.6854 10 6 3.8523 1.6666 -3.4272 11 6 3.5711 0.6772 -2.2779 12 6 2.0324 -0.7104 1.2304 13 8 2.6233 -1.7641 1.1235 14 7 1.8249 -0.1749 2.4496 15 6 2.1703 -0.8029 3.7365 16 6 1.7743 0.1877 4.8516 17 6 1.7487 1.5514 4.1121 18 1 2.7506 1.9737 4.0365 19 7 0.8344 2.4883 4.7698 20 6 -0.5463 2.0882 5.0521 21 6 1.2705 3.7381 5.1207 22 1 2.1287 4.1690 4.6268 23 6 0.6093 4.4511 6.1113 24 7 -0.2760 3.8484 6.8764 25 14 0.9759 6.2660 6.3584 26 1 0.0620 7.0753 5.5126 27 1 0.7742 6.6219 7.7859 28 1 2.3828 6.5438 5.9729 29 6 1.2132 1.1393 2.7182 30 1 -0.3633 0.4530 0.9224 31 1 -0.3634 0.5723 -0.8535 32 1 -0.3633 -1.0253 -0.0689 33 1 1.5204 1.0303 -2.2149 34 1 2.7316 -1.2182 -3.8593 35 1 1.0049 -1.2340 -3.4136 36 1 1.2123 1.3085 -4.2354 37 1 0.8084 -0.0300 -5.3259 38 1 2.6433 1.6226 -6.0887 39 1 2.9834 -0.1092 -6.2408 40 1 4.8514 1.3970 -5.2826 41 1 4.4838 -0.1046 -4.4160 42 1 2.9907 2.3193 -3.5675 43 1 4.7306 2.2661 -3.1876 44 1 3.7547 1.1785 -1.3276 45 1 4.2525 -0.1688 -2.3676 46 1 3.2420 -0.9980 3.7773 47 1 1.6191 -1.7356 3.8561 48 1 2.5212 0.1934 5.6455 49 1 0.7894 -0.0523 5.2524 50 1 -0.6148 1.7152 6.0740 51 1 -1.2052 2.9485 4.9345 52 1 -0.8463 1.3032 4.3579 53 1 -0.7378 4.3466 7.5689 54 1 0.1267 1.0549 2.7389 55 1 1.5224 1.8628 1.9638 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000972292719.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:39:47 Heat of formation + Delta-G solvation = -82.886701 kcal Electronic energy + Delta-G solvation = -31085.663134 eV Core-core repulsion = 27122.251211 eV Total energy + Delta-G solvation = -3963.411923 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -41.47720 -40.42961 -38.97830 -37.66118 -36.49388 -33.77442 -33.13507 -33.04486 -31.81120 -30.66454 -29.30341 -28.02351 -26.26181 -25.73412 -25.21187 -24.61191 -23.15198 -21.68012 -21.02124 -20.48097 -20.08908 -18.92221 -18.53659 -17.81607 -17.37670 -17.14466 -16.54751 -16.36681 -15.92996 -15.57732 -15.41494 -15.05198 -14.84820 -14.79229 -14.57742 -14.37434 -14.22543 -14.09151 -13.93250 -13.81571 -13.38365 -13.23225 -13.14760 -13.04001 -12.86870 -12.77968 -12.55878 -12.47786 -12.34212 -12.17400 -12.14740 -12.07110 -11.97970 -11.82264 -11.55183 -11.45191 -11.40242 -11.23975 -11.11829 -10.89973 -10.61718 -10.48063 -9.73277 -8.78541 -7.80907 -5.29469 1.47990 1.50541 1.51605 1.59485 1.65777 2.51078 2.72673 3.30622 3.31855 3.62685 3.71031 3.79008 3.82473 3.89275 3.93332 3.99937 4.02707 4.18238 4.22014 4.22775 4.30108 4.31323 4.35682 4.40879 4.43930 4.55337 4.60610 4.64808 4.72831 4.78413 4.88729 4.89487 4.90600 4.99153 4.99979 5.10108 5.12210 5.14733 5.19813 5.23466 5.27414 5.29391 5.32546 5.33745 5.35902 5.43841 5.45898 5.57694 5.67643 5.78492 6.16201 6.32884 6.45151 7.05404 7.16757 7.86628 8.29611 9.21770 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.013832 B = 0.002578 C = 0.002336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2023.769519 B =10859.312210 C =11984.324024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.080 3.920 3 H 0.098 0.902 4 O -0.380 6.380 5 C 0.089 3.911 6 C -0.108 4.108 7 C -0.115 4.115 8 C -0.116 4.116 9 C -0.122 4.122 10 C -0.107 4.107 11 C -0.144 4.144 12 C 0.525 3.475 13 O -0.573 6.573 14 N -0.609 5.609 15 C 0.117 3.883 16 C -0.139 4.139 17 C 0.165 3.835 18 H 0.076 0.924 19 N -0.599 5.599 20 C 0.177 3.823 21 C -0.263 4.263 22 H 0.075 0.925 23 C -0.049 4.049 24 N -0.936 5.936 25 Si 0.966 3.034 26 H -0.286 1.286 27 H -0.299 1.299 28 H -0.269 1.269 29 C 0.089 3.911 30 H 0.077 0.923 31 H 0.091 0.909 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.069 0.931 39 H 0.062 0.938 40 H 0.068 0.932 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.069 0.931 44 H 0.051 0.949 45 H 0.056 0.944 46 H 0.066 0.934 47 H 0.067 0.933 48 H 0.078 0.922 49 H 0.069 0.931 50 H 0.005 0.995 51 H 0.019 0.981 52 H 0.033 0.967 53 H 0.248 0.752 54 H 0.077 0.923 55 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.191 -5.113 -22.469 23.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.019 3.981 3 H 0.116 0.884 4 O -0.299 6.299 5 C 0.032 3.968 6 C -0.146 4.146 7 C -0.152 4.152 8 C -0.153 4.153 9 C -0.159 4.159 10 C -0.145 4.145 11 C -0.181 4.181 12 C 0.314 3.686 13 O -0.452 6.452 14 N -0.344 5.344 15 C -0.006 4.006 16 C -0.179 4.179 17 C 0.056 3.944 18 H 0.094 0.906 19 N -0.320 5.320 20 C 0.033 3.967 21 C -0.393 4.393 22 H 0.093 0.907 23 C -0.245 4.245 24 N -0.583 5.583 25 Si 0.795 3.205 26 H -0.213 1.213 27 H -0.226 1.226 28 H -0.194 1.194 29 C -0.036 4.036 30 H 0.096 0.904 31 H 0.110 0.890 32 H 0.079 0.921 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.081 0.919 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.093 0.907 43 H 0.088 0.912 44 H 0.069 0.931 45 H 0.075 0.925 46 H 0.084 0.916 47 H 0.085 0.915 48 H 0.096 0.904 49 H 0.088 0.912 50 H 0.024 0.976 51 H 0.037 0.963 52 H 0.051 0.949 53 H 0.057 0.943 54 H 0.095 0.905 55 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 3.453 -5.818 -22.482 23.478 hybrid contribution 0.090 0.964 0.992 1.386 sum 3.544 -4.854 -21.489 22.314 Atomic orbital electron populations 1.22226 0.91872 1.03589 1.04525 1.21860 0.96161 0.96015 0.84062 0.88398 1.88081 1.86607 1.35709 1.19508 1.21345 0.96577 0.93033 0.85802 1.21396 1.02209 0.98390 0.92581 1.21290 0.98275 0.98971 0.96707 1.21925 0.93668 1.02017 0.97735 1.21364 0.98081 1.00138 0.96333 1.21217 1.02469 0.97134 0.93675 1.21040 0.97692 0.99689 0.99726 1.20620 0.78818 0.85153 0.83997 1.90660 1.43069 1.24993 1.86496 1.48505 1.60598 1.20201 1.05115 1.21924 1.00471 0.96284 0.81893 1.23061 1.02320 0.95488 0.97055 1.21533 0.93601 0.89106 0.90142 0.90621 1.43982 1.07682 1.12002 1.68344 1.20532 0.84174 0.95976 0.96061 1.19561 1.13349 0.92041 1.14305 0.90680 1.25724 1.00017 1.02378 0.96343 1.70231 1.30701 1.35677 1.21667 0.85277 0.78206 0.80788 0.76204 1.21268 1.22641 1.19353 1.22987 0.98408 0.82736 0.99446 0.90376 0.89024 0.92069 0.91070 0.91642 0.91314 0.91465 0.90775 0.91215 0.91897 0.91374 0.92883 0.90661 0.91191 0.93068 0.92502 0.91561 0.91463 0.90373 0.91197 0.97640 0.96255 0.94894 0.94318 0.90539 0.89675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.44 9.43 71.98 0.68 -2.76 16 2 C 0.08 2.02 2.21 29.85 0.07 2.09 16 3 H 0.10 2.14 6.72 -2.39 -0.02 2.13 16 4 O -0.38 -10.27 9.08 -130.03 -1.18 -11.45 16 5 C 0.09 1.74 1.95 28.74 0.06 1.80 16 6 C -0.11 -1.80 5.24 30.22 0.16 -1.64 16 7 C -0.11 -1.37 5.32 30.16 0.16 -1.21 16 8 C -0.12 -1.26 5.85 31.32 0.18 -1.08 16 9 C -0.12 -1.55 5.31 30.14 0.16 -1.39 16 10 C -0.11 -1.52 5.61 30.20 0.17 -1.35 16 11 C -0.14 -2.77 4.78 28.74 0.14 -2.63 16 12 C 0.53 16.99 7.20 87.66 0.63 17.62 16 13 O -0.57 -23.13 16.86 15.92 0.27 -22.86 16 14 N -0.61 -18.49 3.33 -811.10 -2.70 -21.20 16 15 C 0.12 3.51 6.89 86.68 0.60 4.11 16 16 C -0.14 -4.54 6.50 31.78 0.21 -4.33 16 17 C 0.17 5.95 3.53 46.38 0.16 6.11 16 18 H 0.08 2.78 7.95 -2.39 -0.02 2.76 16 19 N -0.60 -27.03 2.96 -695.05 -2.06 -29.09 16 20 C 0.18 7.99 7.55 127.77 0.96 8.95 16 21 C -0.26 -13.30 9.63 84.03 0.81 -12.49 16 22 H 0.08 3.66 7.85 -2.92 -0.02 3.64 16 23 C -0.05 -2.60 5.12 84.86 0.43 -2.17 16 24 N -0.94 -52.71 10.59 21.65 0.23 -52.48 16 25 Si 0.97 42.85 29.57 68.60 2.03 44.88 16 26 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 27 H -0.30 -13.61 7.11 99.48 0.71 -12.90 16 28 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 29 C 0.09 2.63 5.18 86.85 0.45 3.08 16 30 H 0.08 1.63 5.89 -2.39 -0.01 1.61 16 31 H 0.09 1.47 8.02 -2.39 -0.02 1.46 16 32 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 33 H 0.07 1.18 6.92 -2.39 -0.02 1.16 16 34 H 0.06 1.18 6.97 -2.39 -0.02 1.16 16 35 H 0.07 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.07 0.75 6.63 -2.38 -0.02 0.74 16 37 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 38 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 41 H 0.05 0.78 6.62 -2.39 -0.02 0.77 16 42 H 0.07 0.94 6.98 -2.39 -0.02 0.93 16 43 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 44 H 0.05 1.08 7.70 -2.39 -0.02 1.06 16 45 H 0.06 1.26 7.46 -2.39 -0.02 1.24 16 46 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 47 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 49 H 0.07 2.40 6.99 -2.38 -0.02 2.38 16 50 H 0.01 0.27 7.36 -2.39 -0.02 0.25 16 51 H 0.02 0.94 7.25 -2.39 -0.02 0.92 16 52 H 0.03 1.24 6.38 -2.39 -0.02 1.22 16 53 H 0.25 13.67 8.31 -92.70 -0.77 12.90 16 54 H 0.08 2.26 5.38 -2.39 -0.01 2.24 16 55 H 0.08 2.27 7.30 -2.38 -0.02 2.26 16 Total: -1.00 -64.81 407.13 3.46 -61.35 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: 0.85 Total: 18.12 kcal Atomic # 6 Polarization: 6.69 SS G_CDS: 6.03 Total: 12.71 kcal Atomic # 7 Polarization: -98.23 SS G_CDS: -4.53 Total: -102.76 kcal Atomic # 8 Polarization: -33.40 SS G_CDS: -0.91 Total: -34.31 kcal Atomic # 14 Polarization: 42.85 SS G_CDS: 2.03 Total: 44.88 kcal Total: -64.81 3.46 -61.35 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972292719.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.534 kcal (2) G-P(sol) polarization free energy of solvation -64.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds