Wall clock time and date at job start Tue Mar 31 2020 23:38:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09008 * 109.46988 * 2 1 4 4 C 1.50702 * 109.47079 * 119.99368 * 2 1 3 5 5 O 1.21275 * 119.99905 * 31.81479 * 4 2 1 6 6 N 1.34778 * 120.00034 * 211.80675 * 4 2 1 7 7 C 1.46930 * 120.62978 * 4.87200 * 6 4 2 8 8 C 1.53621 * 108.54241 * 126.36791 * 7 6 4 9 9 C 1.53037 * 109.24441 * 54.85377 * 8 7 6 10 10 O 1.42900 * 109.45875 * 178.49294 * 9 8 7 11 11 C 1.42905 * 114.00110 * 270.06489 * 10 9 8 12 12 C 1.53940 * 113.74627 * 248.74644 * 11 10 9 13 13 N 1.47811 * 86.03685 * 222.08293 * 12 11 10 14 14 C 1.36940 * 134.45377 * 204.64686 * 13 12 11 15 15 H 1.08003 * 119.99560 * 179.86048 * 14 13 12 16 16 C 1.38807 * 120.00279 * 359.85824 * 14 13 12 17 17 N 1.31622 * 119.99935 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00003 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47136 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.46950 * 120.00321 * 18 16 14 21 21 H 1.48499 * 109.46842 * 239.99950 * 18 16 14 22 22 C 1.47582 * 91.05131 * 24.54515 * 13 12 11 23 23 C 1.53045 * 109.53956 * 298.50824 * 9 8 7 24 24 C 1.46927 * 120.62819 * 185.14426 * 6 4 2 25 25 C 1.52997 * 109.47366 * 239.99878 * 2 1 3 26 26 C 1.52992 * 109.47113 * 59.99699 * 25 2 1 27 27 C 1.53001 * 109.46880 * 299.99869 * 25 2 1 28 28 C 1.52994 * 109.47139 * 179.97438 * 25 2 1 29 29 H 1.09002 * 109.46868 * 175.44560 * 1 2 3 30 30 H 1.08999 * 109.47035 * 295.44163 * 1 2 3 31 31 H 1.08998 * 109.46933 * 55.44248 * 1 2 3 32 32 H 1.09003 * 109.58197 * 246.19560 * 7 6 4 33 33 H 1.08993 * 109.58452 * 6.62013 * 7 6 4 34 34 H 1.09008 * 109.63369 * 294.85917 * 8 7 6 35 35 H 1.09004 * 109.43108 * 174.72355 * 8 7 6 36 36 H 1.08995 * 109.45028 * 58.52730 * 9 8 7 37 37 H 1.09009 * 112.93764 * 20.33458 * 11 10 9 38 38 H 1.09005 * 113.76509 * 336.34387 * 12 11 10 39 39 H 1.09000 * 113.77270 * 107.74007 * 12 11 10 40 40 H 0.97001 * 120.00077 * 179.97438 * 17 16 14 41 41 H 1.08992 * 113.77050 * 221.15373 * 22 13 12 42 42 H 1.09001 * 113.76766 * 89.75668 * 22 13 12 43 43 H 1.08999 * 109.49761 * 301.41834 * 23 9 8 44 44 H 1.08997 * 109.52528 * 181.33057 * 23 9 8 45 45 H 1.08996 * 109.58923 * 353.38245 * 24 6 4 46 46 H 1.09000 * 109.58321 * 113.66029 * 24 6 4 47 47 H 1.09002 * 109.47164 * 300.00551 * 26 25 2 48 48 H 1.09002 * 109.47515 * 60.00093 * 26 25 2 49 49 H 1.09000 * 109.47127 * 180.02562 * 26 25 2 50 50 H 1.09000 * 109.46936 * 179.97438 * 27 25 2 51 51 H 1.08999 * 109.47417 * 300.00084 * 27 25 2 52 52 H 1.09007 * 109.47344 * 59.99888 * 27 25 2 53 53 H 1.08998 * 109.47456 * 299.99633 * 28 25 2 54 54 H 1.08999 * 109.47720 * 59.99851 * 28 25 2 55 55 H 1.09000 * 109.47070 * 179.97438 * 28 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 1.3930 -1.6243 1.7065 6 7 3.1922 -0.3298 1.8020 7 6 3.9240 0.8420 1.3020 8 6 4.1846 1.7941 2.4791 9 6 4.9048 1.0325 3.5940 10 8 5.1807 1.9227 4.6773 11 6 6.4431 2.5850 4.5782 12 6 7.4649 2.1334 5.6373 13 7 7.8114 3.5646 5.7649 14 6 8.9244 4.2491 6.1749 15 1 8.9253 5.3291 6.1728 16 6 10.0512 3.5549 6.5933 17 7 10.0502 2.2387 6.5954 18 14 11.5691 4.4886 7.1533 19 1 11.3159 5.9486 7.0561 20 1 11.8782 4.1319 8.5612 21 1 12.7199 4.1275 6.2870 22 6 6.4780 3.9594 5.2707 23 6 4.0170 -0.1120 4.0883 24 6 3.7517 -1.0825 2.9330 25 6 2.0401 -0.7213 -1.2492 26 6 1.5301 -0.0001 -2.4984 27 6 1.5301 -2.1638 -1.2491 28 6 3.5700 -0.7207 -1.2495 29 1 -0.3633 -1.0245 -0.0816 30 1 -0.3633 0.4415 0.9280 31 1 -0.3633 0.5829 -0.8463 32 1 4.8725 0.5232 0.8695 33 1 3.3270 1.3498 0.5446 34 1 3.2368 2.1795 2.8551 35 1 4.8076 2.6233 2.1437 36 1 5.8407 0.6264 3.2103 37 1 6.8390 2.5951 3.5626 38 1 7.0109 1.7097 6.5331 39 1 8.2710 1.5190 5.2362 40 1 10.8377 1.7535 6.8875 41 1 6.4976 4.8003 4.5776 42 1 5.7335 4.0734 6.0587 43 1 3.0708 0.2913 4.4491 44 1 4.5202 -0.6397 4.8984 45 1 3.0410 -1.8448 3.2520 46 1 4.6850 -1.5571 2.6300 47 1 0.4400 -0.0001 -2.4984 48 1 1.8933 1.0276 -2.4985 49 1 1.8931 -0.5142 -3.3883 50 1 1.8931 -2.6775 -2.1393 51 1 1.8934 -2.6776 -0.3591 52 1 0.4400 -2.1638 -1.2491 53 1 3.9330 0.3071 -1.2498 54 1 3.9338 -1.2342 -0.3595 55 1 3.9334 -1.2349 -2.1392 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001093546708.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:38:00 Heat of formation + Delta-G solvation = -55.052651 kcal Electronic energy + Delta-G solvation = -31062.368771 eV Core-core repulsion = 27100.163823 eV Total energy + Delta-G solvation = -3962.204948 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.81842 -40.32469 -38.92119 -37.92561 -36.77762 -34.16849 -32.92897 -32.19278 -31.73022 -29.45550 -28.28382 -28.16317 -26.63893 -26.41680 -25.03499 -24.72014 -23.97048 -22.05117 -21.24759 -20.55403 -18.96075 -18.83135 -18.52538 -17.75544 -17.01551 -16.95117 -16.82557 -15.98965 -15.70379 -15.46778 -15.42562 -15.17049 -15.04688 -14.77652 -14.60516 -14.51610 -13.98873 -13.86307 -13.59780 -13.44698 -13.27772 -13.15295 -13.02680 -12.93877 -12.86614 -12.82146 -12.77026 -12.67930 -12.63721 -12.24810 -12.18668 -12.12642 -11.92675 -11.85411 -11.78433 -11.48698 -11.45549 -11.41995 -11.21312 -10.89652 -10.56378 -10.19775 -9.68984 -8.98395 -7.93474 -5.28821 1.45564 1.47156 1.57649 1.63649 1.99185 2.41407 2.72609 3.26533 3.43946 3.46761 3.65608 3.71703 3.79655 3.85303 3.91730 4.02185 4.10552 4.14066 4.18936 4.30234 4.34182 4.38453 4.41283 4.47310 4.58103 4.66946 4.75870 4.77669 4.78979 4.84127 4.85993 4.86859 4.90103 4.92945 4.94197 5.00472 5.02973 5.08683 5.11194 5.15238 5.20193 5.21062 5.23402 5.23880 5.36070 5.40482 5.48093 5.51625 5.53074 5.56281 5.87401 6.41849 6.46562 6.87925 7.19895 7.56491 8.51338 9.23883 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.025101 B = 0.002096 C = 0.002065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.210361 B =13357.672797 C =13558.279918 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.102 4.102 3 H 0.113 0.887 4 C 0.520 3.480 5 O -0.581 6.581 6 N -0.610 5.610 7 C 0.108 3.892 8 C -0.151 4.151 9 C 0.083 3.917 10 O -0.384 6.384 11 C 0.073 3.927 12 C 0.143 3.857 13 N -0.639 5.639 14 C -0.234 4.234 15 H 0.089 0.911 16 C -0.070 4.070 17 N -0.955 5.955 18 Si 0.984 3.016 19 H -0.262 1.262 20 H -0.294 1.294 21 H -0.288 1.288 22 C 0.121 3.879 23 C -0.123 4.123 24 C 0.118 3.882 25 C -0.052 4.052 26 C -0.139 4.139 27 C -0.144 4.144 28 C -0.153 4.153 29 H 0.055 0.945 30 H 0.045 0.955 31 H 0.088 0.912 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.068 0.932 35 H 0.090 0.910 36 H 0.065 0.935 37 H 0.101 0.899 38 H 0.010 0.990 39 H 0.045 0.955 40 H 0.249 0.751 41 H 0.070 0.930 42 H 0.042 0.958 43 H 0.062 0.938 44 H 0.076 0.924 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.063 0.937 48 H 0.070 0.930 49 H 0.063 0.937 50 H 0.062 0.938 51 H 0.033 0.967 52 H 0.058 0.942 53 H 0.076 0.924 54 H 0.043 0.957 55 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.035 -4.619 -21.480 28.425 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.123 4.123 3 H 0.131 0.869 4 C 0.311 3.689 5 O -0.461 6.461 6 N -0.343 5.343 7 C -0.014 4.014 8 C -0.189 4.189 9 C 0.026 3.974 10 O -0.302 6.302 11 C 0.014 3.986 12 C 0.017 3.983 13 N -0.368 5.368 14 C -0.362 4.362 15 H 0.107 0.893 16 C -0.262 4.262 17 N -0.604 5.604 18 Si 0.811 3.189 19 H -0.186 1.186 20 H -0.221 1.221 21 H -0.215 1.215 22 C -0.004 4.004 23 C -0.161 4.161 24 C -0.004 4.004 25 C -0.052 4.052 26 C -0.196 4.196 27 C -0.201 4.201 28 C -0.210 4.210 29 H 0.074 0.926 30 H 0.064 0.936 31 H 0.107 0.893 32 H 0.106 0.894 33 H 0.133 0.867 34 H 0.087 0.913 35 H 0.108 0.892 36 H 0.083 0.917 37 H 0.118 0.882 38 H 0.028 0.972 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.088 0.912 42 H 0.060 0.940 43 H 0.080 0.920 44 H 0.095 0.905 45 H 0.101 0.899 46 H 0.099 0.901 47 H 0.082 0.918 48 H 0.089 0.911 49 H 0.082 0.918 50 H 0.081 0.919 51 H 0.053 0.947 52 H 0.077 0.923 53 H 0.095 0.905 54 H 0.062 0.938 55 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.207 -5.018 -20.969 28.220 hybrid contribution 1.171 -0.060 1.167 1.654 sum -17.036 -5.077 -19.803 26.611 Atomic orbital electron populations 1.21773 0.92600 1.02744 1.02403 1.21566 0.98140 1.00936 0.91636 0.86912 1.21154 0.79449 0.83158 0.85174 1.90650 1.57378 1.32612 1.65471 1.48299 1.22884 1.29996 1.33107 1.22208 0.98131 0.84976 0.96096 1.22499 1.01855 0.99029 0.95516 1.22240 0.97842 0.89934 0.87409 1.87944 1.36406 1.59295 1.46590 1.24382 0.82958 0.92754 0.98486 1.22680 0.93751 0.87287 0.94609 1.46099 1.09938 1.03607 1.77118 1.19470 0.89610 0.90949 1.36181 0.89343 1.25723 1.01465 0.96643 1.02416 1.70035 1.29602 1.06601 1.54142 0.84936 0.78733 0.78265 0.76937 1.18631 1.22143 1.21513 1.22859 0.86119 0.95767 0.95658 1.21886 0.99958 0.95883 0.98401 1.21487 0.99432 0.93958 0.85571 1.20435 0.95975 0.95148 0.93685 1.21900 1.01641 1.00608 0.95413 1.21950 1.01388 0.95704 1.01051 1.22134 0.93880 1.03046 1.01922 0.92561 0.93594 0.89285 0.89368 0.86660 0.91301 0.89159 0.91688 0.88167 0.97224 0.93627 0.94170 0.91167 0.94048 0.91965 0.90518 0.89934 0.90053 0.91775 0.91133 0.91811 0.91876 0.94734 0.92275 0.90498 0.93777 0.91759 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 8.02 71.98 0.58 -1.38 16 2 C -0.10 -1.42 1.71 -11.54 -0.02 -1.44 16 3 H 0.11 1.09 5.69 -2.38 -0.01 1.08 16 4 C 0.52 10.93 5.08 87.66 0.44 11.38 16 5 O -0.58 -16.87 14.60 -3.01 -0.04 -16.92 16 6 N -0.61 -11.42 2.35 -818.07 -1.92 -13.34 16 7 C 0.11 1.46 4.34 86.51 0.38 1.84 16 8 C -0.15 -2.75 5.71 30.82 0.18 -2.57 16 9 C 0.08 2.06 2.45 30.62 0.07 2.13 16 10 O -0.38 -12.76 10.01 -148.98 -1.49 -14.25 16 11 C 0.07 2.72 4.29 31.25 0.13 2.85 16 12 C 0.14 7.03 7.36 86.44 0.64 7.67 16 13 N -0.64 -33.55 3.70 -720.87 -2.67 -36.22 16 14 C -0.23 -13.25 10.70 84.03 0.90 -12.35 16 15 H 0.09 4.73 7.83 -2.91 -0.02 4.71 16 16 C -0.07 -4.00 5.50 84.86 0.47 -3.53 16 17 N -0.96 -58.27 11.39 21.65 0.25 -58.02 16 18 Si 0.98 45.65 29.55 68.60 2.03 47.68 16 19 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 20 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 21 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 22 C 0.12 4.95 8.77 86.48 0.76 5.71 16 23 C -0.12 -2.91 5.73 30.67 0.18 -2.74 16 24 C 0.12 2.48 6.44 86.36 0.56 3.04 16 25 C -0.05 -0.61 0.57 -52.19 -0.03 -0.64 16 26 C -0.14 -1.06 8.12 71.98 0.58 -0.47 16 27 C -0.14 -2.22 7.75 71.98 0.56 -1.66 16 28 C -0.15 -1.68 6.91 71.98 0.50 -1.18 16 29 H 0.06 0.97 6.06 -2.39 -0.01 0.95 16 30 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 31 H 0.09 0.81 6.68 -2.39 -0.02 0.80 16 32 H 0.09 1.01 7.81 -2.39 -0.02 1.00 16 33 H 0.12 1.01 4.65 -2.39 -0.01 1.00 16 34 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 35 H 0.09 1.51 8.14 -2.38 -0.02 1.49 16 36 H 0.07 1.58 7.74 -2.39 -0.02 1.57 16 37 H 0.10 3.35 7.80 -2.38 -0.02 3.33 16 38 H 0.01 0.52 8.14 -2.38 -0.02 0.50 16 39 H 0.05 2.46 7.16 -2.39 -0.02 2.45 16 40 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 41 H 0.07 2.54 8.14 -2.39 -0.02 2.52 16 42 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 43 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 44 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 45 H 0.08 1.98 7.00 -2.39 -0.02 1.96 16 46 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 47 H 0.06 0.46 6.53 -2.39 -0.02 0.45 16 48 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 49 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 50 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 51 H 0.03 0.72 6.58 -2.39 -0.02 0.71 16 52 H 0.06 0.92 6.33 -2.38 -0.02 0.90 16 53 H 0.08 0.59 6.96 -2.39 -0.02 0.57 16 54 H 0.04 0.64 6.29 -2.39 -0.02 0.62 16 55 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 Total: -1.00 -72.96 407.63 3.87 -69.10 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.85 Total: 15.31 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: 6.87 Total: 6.65 kcal Atomic # 7 Polarization: -103.23 SS G_CDS: -4.34 Total: -107.58 kcal Atomic # 8 Polarization: -29.63 SS G_CDS: -1.54 Total: -31.17 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -72.96 3.87 -69.10 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001093546708.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.046 kcal (2) G-P(sol) polarization free energy of solvation -72.965 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds