Wall clock time and date at job start Tue Mar 31 2020 23:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50700 * 119.99773 * 2 1 4 4 C 1.53000 * 109.47171 * 125.00076 * 3 2 1 5 5 O 1.42900 * 109.46986 * 179.97438 * 4 3 2 6 6 C 1.42905 * 113.99677 * 180.02562 * 5 4 3 7 7 H 1.09005 * 109.46836 * 330.00026 * 6 5 4 8 8 C 1.53001 * 109.47268 * 89.99732 * 6 5 4 9 9 C 1.50692 * 109.46933 * 210.00072 * 6 5 4 10 10 O 1.21284 * 120.00255 * 354.36349 * 9 6 5 11 11 N 1.34778 * 120.00274 * 174.37030 * 9 6 5 12 12 C 1.46501 * 120.00452 * 184.80803 * 11 9 6 13 13 C 1.52995 * 109.47199 * 175.91254 * 12 11 9 14 14 H 1.09000 * 109.58660 * 301.45009 * 13 12 11 15 15 C 1.53196 * 109.58637 * 181.02410 * 13 12 11 16 16 C 1.53037 * 109.31419 * 185.57968 * 15 13 12 17 17 C 1.53036 * 109.53810 * 61.36147 * 16 15 13 18 18 C 1.53001 * 109.49691 * 178.68215 * 17 16 15 19 19 C 1.53003 * 109.52283 * 58.60831 * 17 16 15 20 20 C 1.53184 * 109.31605 * 298.63755 * 17 16 15 21 21 N 1.46923 * 109.58633 * 61.73644 * 13 12 11 22 22 C 1.36941 * 120.63304 * 353.37049 * 21 13 12 23 23 H 1.08005 * 119.99459 * 33.90453 * 22 21 13 24 24 C 1.38807 * 119.99923 * 213.90699 * 22 21 13 25 25 N 1.31619 * 120.00318 * 9.13594 * 24 22 21 26 26 Si 1.86804 * 119.99711 * 189.13780 * 24 22 21 27 27 H 1.48502 * 109.47085 * 95.15590 * 26 24 22 28 28 H 1.48495 * 109.47057 * 215.15788 * 26 24 22 29 29 H 1.48507 * 109.47117 * 335.15693 * 26 24 22 30 30 H 1.07998 * 119.99964 * 179.97438 * 1 2 3 31 31 H 1.08005 * 120.00098 * 0.02562 * 1 2 3 32 32 H 1.07995 * 119.99808 * 180.02562 * 2 1 3 33 33 H 1.08997 * 109.47316 * 4.99268 * 3 2 1 34 34 H 1.09000 * 109.46962 * 244.99746 * 3 2 1 35 35 H 1.08997 * 109.46959 * 59.99663 * 4 3 2 36 36 H 1.09000 * 109.46908 * 299.99703 * 4 3 2 37 37 H 1.09005 * 109.46830 * 64.93918 * 8 6 5 38 38 H 1.08999 * 109.46889 * 184.93775 * 8 6 5 39 39 H 1.08994 * 109.46899 * 304.94339 * 8 6 5 40 40 H 0.97001 * 119.99782 * 4.80524 * 11 9 6 41 41 H 1.09001 * 109.47042 * 295.91458 * 12 11 9 42 42 H 1.09001 * 109.47164 * 55.90876 * 12 11 9 43 43 H 1.09001 * 109.49651 * 305.53392 * 15 13 12 44 44 H 1.09002 * 109.49795 * 65.62096 * 15 13 12 45 45 H 1.08998 * 109.45503 * 301.34419 * 16 15 13 46 46 H 1.08994 * 109.45970 * 181.38793 * 16 15 13 47 47 H 1.08999 * 109.47336 * 179.83957 * 18 17 16 48 48 H 1.08998 * 109.47517 * 299.84079 * 18 17 16 49 49 H 1.09001 * 109.46942 * 59.84210 * 18 17 16 50 50 H 1.08997 * 109.46787 * 300.13998 * 19 17 16 51 51 H 1.08998 * 109.47542 * 60.14345 * 19 17 16 52 52 H 1.09002 * 109.46739 * 180.14324 * 19 17 16 53 53 H 1.09001 * 109.59082 * 294.84744 * 20 17 16 54 54 H 1.09008 * 109.70618 * 174.49355 * 20 17 16 55 55 H 0.97001 * 119.99890 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 8 3.7499 2.5705 1.1812 6 6 4.6894 2.6992 2.2503 7 1 4.3371 2.1346 3.1136 8 6 6.0476 2.1539 1.8041 9 6 4.8296 4.1524 2.6235 10 8 4.2679 5.0040 1.9675 11 7 5.5792 4.5060 3.6864 12 6 5.6310 5.9066 4.1129 13 6 6.4632 6.0198 5.3917 14 1 6.0224 5.3978 6.1708 15 6 6.4979 7.4798 5.8543 16 6 7.4431 7.6094 7.0509 17 6 8.8575 7.2015 6.6324 18 6 9.8080 7.3627 7.8204 19 6 9.3261 8.0913 5.4793 20 6 8.8496 5.7384 6.1787 21 7 7.8381 5.5753 5.1256 22 6 8.1704 5.0191 3.9191 23 1 7.6857 5.3594 3.0159 24 6 9.1301 4.0182 3.8571 25 7 9.5900 3.4778 4.9657 26 14 9.7689 3.4381 2.2003 27 1 11.0212 4.1649 1.8706 28 1 10.0435 1.9799 2.2587 29 1 8.7497 3.7084 1.1546 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5400 0.9353 -0.0004 32 1 1.8500 -0.9353 -0.0004 33 1 1.3586 2.1316 0.0894 34 1 2.6213 1.4026 -0.9314 35 1 3.7399 0.5066 1.0920 36 1 2.4772 1.2357 2.1130 37 1 6.4404 2.7730 0.9975 38 1 6.7401 2.1710 2.6456 39 1 5.9296 1.1294 1.4512 40 1 6.0843 3.8331 4.1690 41 1 6.0877 6.5089 3.3276 42 1 4.6198 6.2657 4.3044 43 1 6.8533 8.1111 5.0399 44 1 5.4955 7.7927 6.1468 45 1 7.1009 6.9591 7.8559 46 1 7.4506 8.6427 7.3975 47 1 10.8147 7.0694 7.5227 48 1 9.8134 8.4038 8.1429 49 1 9.4732 6.7295 8.6421 50 1 8.6480 7.9770 4.6336 51 1 9.3316 9.1322 5.8025 52 1 10.3325 7.7984 5.1802 53 1 8.6043 5.0951 7.0237 54 1 9.8309 5.4696 5.7876 55 1 10.2609 2.7786 4.9223 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001098960897.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:54:27 Heat of formation + Delta-G solvation = -72.355780 kcal Electronic energy + Delta-G solvation = -31490.949857 eV Core-core repulsion = 27527.994590 eV Total energy + Delta-G solvation = -3962.955268 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.07265 -40.09642 -38.82940 -36.58427 -35.98573 -34.97726 -33.88187 -32.39033 -31.71991 -29.95555 -28.80220 -28.00026 -27.29521 -25.84721 -24.52161 -23.88728 -23.55466 -21.70712 -21.21671 -20.61431 -19.44559 -18.61644 -18.00674 -17.69765 -17.18425 -16.99654 -16.51936 -16.10228 -15.78328 -15.63585 -15.44912 -15.24772 -15.00034 -14.74980 -14.63499 -14.44900 -14.31057 -13.93744 -13.73012 -13.58396 -13.36741 -13.13109 -12.97817 -12.82165 -12.80197 -12.72044 -12.54012 -12.48002 -12.44262 -12.20984 -12.09531 -12.02543 -11.96557 -11.82689 -11.59443 -11.23578 -11.01315 -10.90034 -10.86690 -10.47487 -10.41988 -10.26342 -9.84636 -8.44487 -7.77543 -5.27868 1.33434 1.39541 1.48142 1.53148 1.66050 2.03215 2.50932 2.97447 3.37315 3.61660 3.74996 3.91813 3.98058 4.02027 4.02541 4.06625 4.15254 4.22544 4.26987 4.35945 4.43096 4.44879 4.45670 4.54868 4.62361 4.67855 4.72385 4.78445 4.88972 4.89429 4.95678 4.97656 5.02441 5.07795 5.09602 5.12223 5.15020 5.15894 5.18698 5.28047 5.42766 5.50670 5.56235 5.61765 5.67554 5.72018 5.76944 5.84814 5.85561 5.92990 6.11560 6.51864 6.73226 7.26098 7.34175 7.93733 8.48664 9.25636 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.015115 B = 0.003054 C = 0.002694 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1852.018693 B = 9167.380612 C =10390.964845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.160 4.160 3 C -0.091 4.091 4 C 0.057 3.943 5 O -0.385 6.385 6 C 0.082 3.918 7 H 0.111 0.889 8 C -0.166 4.166 9 C 0.504 3.496 10 O -0.584 6.584 11 N -0.690 5.690 12 C 0.141 3.859 13 C 0.162 3.838 14 H 0.033 0.967 15 C -0.125 4.125 16 C -0.090 4.090 17 C -0.093 4.093 18 C -0.128 4.128 19 C -0.117 4.117 20 C 0.197 3.803 21 N -0.595 5.595 22 C -0.228 4.228 23 H 0.055 0.945 24 C -0.021 4.021 25 N -0.921 5.921 26 Si 0.923 3.077 27 H -0.302 1.302 28 H -0.288 1.288 29 H -0.274 1.274 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.124 0.876 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.414 0.586 41 H 0.042 0.958 42 H 0.070 0.930 43 H 0.058 0.942 44 H 0.078 0.922 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.040 0.960 48 H 0.067 0.933 49 H 0.051 0.949 50 H 0.045 0.955 51 H 0.058 0.942 52 H 0.028 0.972 53 H -0.004 1.004 54 H 0.048 0.952 55 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.553 -2.544 0.820 10.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.178 4.178 3 C -0.128 4.128 4 C -0.019 4.019 5 O -0.304 6.304 6 C 0.021 3.979 7 H 0.129 0.871 8 C -0.224 4.224 9 C 0.290 3.710 10 O -0.465 6.465 11 N -0.342 5.342 12 C 0.017 3.983 13 C 0.056 3.944 14 H 0.051 0.949 15 C -0.164 4.164 16 C -0.128 4.128 17 C -0.095 4.095 18 C -0.186 4.186 19 C -0.174 4.174 20 C 0.072 3.928 21 N -0.319 5.319 22 C -0.359 4.359 23 H 0.073 0.927 24 C -0.217 4.217 25 N -0.567 5.567 26 Si 0.753 3.247 27 H -0.230 1.230 28 H -0.214 1.214 29 H -0.199 1.199 30 H 0.134 0.866 31 H 0.114 0.886 32 H 0.142 0.858 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.063 0.937 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.251 0.749 41 H 0.060 0.940 42 H 0.088 0.912 43 H 0.077 0.923 44 H 0.096 0.904 45 H 0.073 0.927 46 H 0.090 0.910 47 H 0.060 0.940 48 H 0.086 0.914 49 H 0.070 0.930 50 H 0.064 0.936 51 H 0.077 0.923 52 H 0.047 0.953 53 H 0.014 0.986 54 H 0.067 0.933 55 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -10.890 -1.944 0.243 11.065 hybrid contribution 1.262 -0.946 -0.719 1.733 sum -9.628 -2.889 -0.476 10.064 Atomic orbital electron populations 1.24084 0.95784 1.02787 0.99633 1.22823 0.96255 0.97562 1.01186 1.20619 0.97632 0.96611 0.97968 1.22757 0.94199 0.85674 0.99263 1.87992 1.54649 1.39169 1.48579 1.21816 0.91354 0.92685 0.92051 0.87098 1.22218 0.95246 1.02428 1.02483 1.20831 0.78598 0.91271 0.80286 1.90620 1.49766 1.53294 1.52778 1.45964 1.46552 1.10997 1.30640 1.21242 0.98770 0.82081 0.96193 1.20860 0.85349 0.94795 0.93386 0.94940 1.21956 0.99845 0.96096 0.98548 1.21374 0.93596 1.00973 0.96819 1.21169 0.95662 0.97300 0.95359 1.21701 0.98286 1.01598 0.96986 1.21613 0.99505 0.98182 0.98087 1.20575 0.92983 0.90347 0.88897 1.44147 1.03438 1.70933 1.13347 1.19084 1.19666 1.11411 0.85755 0.92714 1.25420 1.01802 0.97227 0.97301 1.70069 1.32410 1.28117 1.26125 0.85966 0.78334 0.77459 0.82901 1.22970 1.21446 1.19920 0.86623 0.88611 0.85794 0.91618 0.90604 0.91430 0.92226 0.93704 0.90894 0.88954 0.74865 0.94005 0.91160 0.92283 0.90386 0.92679 0.90987 0.94037 0.91445 0.93014 0.93578 0.92336 0.95295 0.98616 0.93313 0.94308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.68 14.32 67.78 0.97 -1.71 16 2 C -0.16 -2.58 9.52 25.64 0.24 -2.33 16 3 C -0.09 -1.89 6.03 29.85 0.18 -1.71 16 4 C 0.06 1.30 5.73 71.98 0.41 1.72 16 5 O -0.38 -12.44 9.53 -130.00 -1.24 -13.68 16 6 C 0.08 2.59 3.13 29.85 0.09 2.68 16 7 H 0.11 2.80 7.79 -2.38 -0.02 2.78 16 8 C -0.17 -5.22 9.49 71.98 0.68 -4.54 16 9 C 0.50 19.64 7.17 87.65 0.63 20.27 16 10 O -0.58 -27.07 16.52 15.94 0.26 -26.81 16 11 N -0.69 -26.01 4.04 -463.07 -1.87 -27.88 16 12 C 0.14 5.23 4.43 86.38 0.38 5.61 16 13 C 0.16 5.87 3.01 44.97 0.14 6.01 16 14 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 15 C -0.13 -3.78 5.03 30.67 0.15 -3.62 16 16 C -0.09 -2.60 4.71 30.62 0.14 -2.45 16 17 C -0.09 -3.13 0.77 -52.11 -0.04 -3.17 16 18 C -0.13 -3.71 8.48 71.98 0.61 -3.10 16 19 C -0.12 -3.96 7.99 71.98 0.58 -3.38 16 20 C 0.20 8.52 3.91 86.36 0.34 8.86 16 21 N -0.59 -25.74 2.40 -675.23 -1.62 -27.37 16 22 C -0.23 -11.00 6.87 84.03 0.58 -10.42 16 23 H 0.06 2.80 6.00 -2.91 -0.02 2.78 16 24 C -0.02 -1.04 5.07 84.86 0.43 -0.61 16 25 N -0.92 -48.89 11.15 21.65 0.24 -48.64 16 26 Si 0.92 42.53 29.56 68.60 2.03 44.56 16 27 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 28 H -0.29 -13.14 7.11 99.48 0.71 -12.43 16 29 H -0.27 -12.54 7.11 99.48 0.71 -11.84 16 30 H 0.12 1.25 8.06 -2.91 -0.02 1.23 16 31 H 0.10 1.40 7.84 -2.91 -0.02 1.38 16 32 H 0.12 1.63 8.06 -2.91 -0.02 1.61 16 33 H 0.07 1.48 7.79 -2.39 -0.02 1.46 16 34 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 35 H 0.07 1.30 7.78 -2.39 -0.02 1.28 16 36 H 0.06 1.23 8.09 -2.39 -0.02 1.21 16 37 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 38 H 0.07 2.44 7.95 -2.39 -0.02 2.43 16 39 H 0.09 2.32 7.78 -2.39 -0.02 2.30 16 40 H 0.41 15.92 7.14 -92.71 -0.66 15.26 16 41 H 0.04 1.75 7.32 -2.39 -0.02 1.73 16 42 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 43 H 0.06 1.89 6.34 -2.39 -0.02 1.87 16 44 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 45 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 46 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 48 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 49 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 50 H 0.05 1.73 5.97 -2.39 -0.01 1.72 16 51 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 52 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 53 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 54 H 0.05 2.47 6.25 -2.38 -0.01 2.45 16 55 H 0.25 13.05 8.31 -92.71 -0.77 12.28 16 Total: -1.00 -61.74 424.48 4.49 -57.24 By element: Atomic # 1 Polarization: 34.31 SS G_CDS: 0.17 Total: 34.49 kcal Atomic # 6 Polarization: 1.57 SS G_CDS: 6.52 Total: 8.09 kcal Atomic # 7 Polarization: -100.64 SS G_CDS: -3.25 Total: -103.89 kcal Atomic # 8 Polarization: -39.51 SS G_CDS: -0.98 Total: -40.48 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 2.03 Total: 44.56 kcal Total: -61.74 4.49 -57.24 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001098960897.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.112 kcal (2) G-P(sol) polarization free energy of solvation -61.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.244 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds