Wall clock time and date at job start Tue Mar 31 2020 23:29:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42902 * 114.00254 * 2 1 4 4 C 1.52995 * 109.47304 * 180.02562 * 3 2 1 5 5 H 1.09002 * 109.47261 * 54.99886 * 4 3 2 6 6 C 1.53000 * 109.46953 * 294.99963 * 4 3 2 7 7 C 1.50694 * 109.47371 * 175.00101 * 4 3 2 8 8 O 1.21283 * 120.00159 * 18.74489 * 7 4 3 9 9 N 1.34780 * 120.00293 * 198.74962 * 7 4 3 10 10 C 1.46928 * 120.63000 * 5.83136 * 9 7 4 11 11 C 1.53195 * 108.77430 * 126.37235 * 10 9 7 12 12 C 1.53034 * 109.30982 * 54.63526 * 11 10 9 13 13 C 1.53036 * 109.54356 * 298.63273 * 12 11 10 14 14 C 1.46922 * 120.63094 * 185.55654 * 9 7 4 15 15 H 1.09001 * 109.58863 * 113.84076 * 14 9 7 16 16 C 1.53001 * 109.58979 * 353.41606 * 14 9 7 17 17 C 1.52999 * 112.84733 * 296.74254 * 16 14 9 18 18 N 1.46494 * 109.46953 * 290.74383 * 17 16 14 19 19 C 1.36942 * 120.00063 * 176.57400 * 18 17 16 20 20 H 1.07999 * 119.99924 * 359.97438 * 19 18 17 21 21 C 1.38806 * 119.99907 * 180.02562 * 19 18 17 22 22 N 1.31626 * 119.99869 * 180.02562 * 21 19 18 23 23 Si 1.86802 * 120.00532 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.47182 * 89.99826 * 23 21 19 25 25 H 1.48497 * 109.47117 * 210.00373 * 23 21 19 26 26 H 1.48504 * 109.46493 * 330.00001 * 23 21 19 27 27 C 1.53778 * 113.61749 * 165.42954 * 16 14 9 28 28 C 1.53773 * 87.08375 * 220.02171 * 27 16 14 29 29 C 1.53780 * 87.08362 * 25.43390 * 28 27 16 30 30 H 1.09007 * 109.47099 * 300.00197 * 1 2 3 31 31 H 1.09009 * 109.47454 * 59.99848 * 1 2 3 32 32 H 1.08996 * 109.47280 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.47010 * 60.00179 * 3 2 1 34 34 H 1.09005 * 109.46734 * 300.00041 * 3 2 1 35 35 H 1.09007 * 109.47160 * 175.07939 * 6 4 3 36 36 H 1.08996 * 109.47269 * 295.07978 * 6 4 3 37 37 H 1.09000 * 109.47350 * 55.08324 * 6 4 3 38 38 H 1.08996 * 109.58573 * 246.16327 * 10 9 7 39 39 H 1.08995 * 109.58199 * 6.58703 * 10 9 7 40 40 H 1.08998 * 109.49387 * 174.59152 * 11 10 9 41 41 H 1.09001 * 109.49191 * 294.65433 * 11 10 9 42 42 H 1.08996 * 109.46234 * 58.65857 * 12 11 10 43 43 H 1.09010 * 109.46022 * 178.61543 * 12 11 10 44 44 H 1.08995 * 109.50456 * 181.31983 * 13 12 11 45 45 H 1.09001 * 109.50071 * 301.41932 * 13 12 11 46 46 H 1.08992 * 109.47264 * 50.74711 * 17 16 14 47 47 H 1.09003 * 109.46924 * 170.74943 * 17 16 14 48 48 H 0.97003 * 120.00192 * 356.56989 * 18 17 16 49 49 H 0.97003 * 120.00010 * 180.02562 * 22 21 19 50 50 H 1.08999 * 113.61603 * 334.57183 * 27 16 14 51 51 H 1.09007 * 113.60891 * 105.47119 * 27 16 14 52 52 H 1.09003 * 113.61323 * 270.88477 * 28 27 16 53 53 H 1.08995 * 113.61700 * 139.98501 * 28 27 16 54 54 H 1.08995 * 113.61611 * 220.01967 * 29 28 27 55 55 H 1.08998 * 113.69221 * 89.12541 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8507 0.5685 -0.8427 6 6 3.9962 0.5364 1.3064 7 6 4.1479 2.5559 -0.1244 8 8 3.4882 3.5403 0.1335 9 7 5.4289 2.6884 -0.5220 10 6 6.2017 1.5181 -0.9600 11 6 6.7846 1.8034 -2.3477 12 6 7.5875 3.1053 -2.3014 13 6 6.6633 4.2634 -1.9184 14 6 6.0772 4.0068 -0.5312 15 1 6.8768 4.0261 0.2094 16 6 5.0454 5.0882 -0.2045 17 6 3.9332 5.1836 -1.2508 18 7 4.4826 5.7158 -2.5002 19 6 3.6844 5.8249 -3.6076 20 1 2.6499 5.5183 -3.5599 21 6 4.2051 6.3287 -4.7916 22 7 3.4378 6.4340 -5.8558 23 14 5.9945 6.8584 -4.8743 24 1 6.8338 5.7047 -5.2862 25 1 6.1407 7.9555 -5.8644 26 1 6.4315 7.3363 -3.5379 27 6 5.6697 6.4457 0.1594 28 6 4.5864 6.5644 1.2443 29 6 4.5267 5.0278 1.2421 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 1.6886 1.8464 0.8900 34 1 1.6886 1.8463 -0.8900 35 1 5.0729 0.3704 1.2699 36 1 3.7582 1.1945 2.1420 37 1 3.4858 -0.4176 1.4385 38 1 7.0115 1.3302 -0.2550 39 1 5.5486 0.6469 -1.0100 40 1 7.4385 0.9829 -2.6432 41 1 5.9739 1.9008 -3.0697 42 1 8.3828 3.0154 -1.5615 43 1 8.0239 3.2979 -3.2816 44 1 7.2308 5.1939 -1.9085 45 1 5.8537 4.3382 -2.6444 46 1 3.5169 4.1924 -1.4300 47 1 3.1484 5.8471 -0.8874 48 1 5.4118 5.9909 -2.5431 49 1 3.8018 6.7857 -6.6833 50 1 6.6809 6.3682 0.5587 51 1 5.5811 7.1925 -0.6297 52 1 3.6686 7.0375 0.8950 53 1 4.9509 6.9859 2.1810 54 1 3.5156 4.6300 1.3271 55 1 5.2249 4.5614 1.9371 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001105517445.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:29:51 Heat of formation + Delta-G solvation = -0.571973 kcal Electronic energy + Delta-G solvation = -33687.596852 eV Core-core repulsion = 29727.754364 eV Total energy + Delta-G solvation = -3959.842488 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.59879 -39.75578 -38.65261 -38.27273 -36.26852 -34.86049 -33.47101 -33.33952 -31.93224 -28.68144 -28.27814 -27.08630 -26.56266 -26.37783 -25.20005 -24.05097 -23.75221 -22.65620 -21.48641 -20.01862 -19.91183 -18.77186 -18.17956 -17.37210 -17.22633 -16.85112 -16.67228 -16.63637 -15.93876 -15.83795 -15.72490 -15.40584 -15.11552 -15.03206 -14.65821 -14.40106 -14.32848 -14.15742 -13.82994 -13.60384 -13.43015 -13.29741 -13.12836 -12.94365 -12.91112 -12.76109 -12.47206 -12.38697 -12.27565 -12.19901 -12.02319 -11.90203 -11.88158 -11.79083 -11.48138 -11.29618 -11.06336 -10.98916 -10.74676 -10.66972 -10.60003 -9.92273 -9.29243 -8.96031 -8.04037 -5.32519 1.28920 1.33213 1.40237 1.72970 2.03457 2.44046 2.87363 3.26915 3.56770 3.61439 3.75554 3.85277 3.87765 3.91816 4.03938 4.07626 4.10616 4.15978 4.20959 4.30322 4.37064 4.41595 4.48835 4.50512 4.52077 4.62204 4.67381 4.72088 4.76161 4.83339 4.85205 4.86602 4.88770 4.96325 4.97778 4.98968 5.04796 5.09917 5.11526 5.22173 5.26433 5.32793 5.35352 5.40256 5.45297 5.58163 5.67663 5.69133 5.81792 5.87614 6.14549 6.21760 6.61787 7.09049 7.45130 7.89968 8.10426 9.18851 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.010427 B = 0.004754 C = 0.004510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.806312 B = 5888.077772 C = 6207.622215 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.401 6.401 3 C 0.085 3.915 4 C -0.102 4.102 5 H 0.104 0.896 6 C -0.125 4.125 7 C 0.485 3.515 8 O -0.519 6.519 9 N -0.598 5.598 10 C 0.107 3.893 11 C -0.135 4.135 12 C -0.114 4.114 13 C -0.171 4.171 14 C 0.176 3.824 15 H 0.092 0.908 16 C -0.064 4.064 17 C 0.198 3.802 18 N -0.753 5.753 19 C -0.225 4.225 20 H 0.044 0.956 21 C -0.061 4.061 22 N -0.986 5.986 23 Si 0.944 3.056 24 H -0.269 1.269 25 H -0.296 1.296 26 H -0.257 1.257 27 C -0.142 4.142 28 C -0.142 4.142 29 C -0.099 4.099 30 H 0.049 0.951 31 H 0.036 0.964 32 H 0.107 0.893 33 H 0.057 0.943 34 H 0.028 0.972 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.076 0.924 38 H 0.098 0.902 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.037 0.963 42 H 0.085 0.915 43 H 0.051 0.949 44 H 0.058 0.942 45 H 0.077 0.923 46 H 0.048 0.952 47 H -0.013 1.013 48 H 0.368 0.632 49 H 0.256 0.744 50 H 0.099 0.901 51 H 0.039 0.961 52 H 0.053 0.947 53 H 0.080 0.920 54 H 0.096 0.904 55 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.089 -15.399 18.624 25.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C 0.007 3.993 4 C -0.123 4.123 5 H 0.122 0.878 6 C -0.183 4.183 7 C 0.276 3.724 8 O -0.398 6.398 9 N -0.331 5.331 10 C -0.015 4.015 11 C -0.173 4.173 12 C -0.151 4.151 13 C -0.210 4.210 14 C 0.073 3.927 15 H 0.109 0.891 16 C -0.065 4.065 17 C 0.073 3.927 18 N -0.401 5.401 19 C -0.356 4.356 20 H 0.062 0.938 21 C -0.252 4.252 22 N -0.638 5.638 23 Si 0.771 3.229 24 H -0.194 1.194 25 H -0.223 1.223 26 H -0.182 1.182 27 C -0.180 4.180 28 C -0.180 4.180 29 C -0.136 4.136 30 H 0.068 0.932 31 H 0.054 0.946 32 H 0.125 0.875 33 H 0.075 0.925 34 H 0.047 0.953 35 H 0.097 0.903 36 H 0.073 0.927 37 H 0.095 0.905 38 H 0.116 0.884 39 H 0.118 0.882 40 H 0.119 0.881 41 H 0.056 0.944 42 H 0.104 0.896 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.095 0.905 46 H 0.066 0.934 47 H 0.005 0.995 48 H 0.204 0.796 49 H 0.065 0.935 50 H 0.117 0.883 51 H 0.058 0.942 52 H 0.072 0.928 53 H 0.099 0.901 54 H 0.114 0.886 55 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 7.662 -15.085 18.673 25.198 hybrid contribution 0.094 1.308 -1.250 1.812 sum 7.756 -13.777 17.423 23.527 Atomic orbital electron populations 1.22912 0.79642 1.04001 1.00396 1.87746 1.21171 1.27588 1.95540 1.22129 0.92734 0.84164 1.00229 1.21157 0.93974 0.94302 1.02881 0.87843 1.21617 1.02350 1.00875 0.93429 1.20602 0.82437 0.91028 0.78341 1.90836 1.62420 1.38467 1.48080 1.47886 1.11757 1.08492 1.64955 1.22023 0.96620 0.87387 0.95461 1.21919 0.99774 0.98409 0.97184 1.21479 0.97818 0.94183 1.01643 1.22543 1.00775 0.98772 0.98918 1.21013 0.93716 0.81572 0.96396 0.89063 1.21981 0.94433 0.93942 0.96135 1.21008 0.92935 0.95675 0.83068 1.43410 1.10603 1.77138 1.08986 1.19006 0.93760 1.33458 0.89392 0.93804 1.25400 1.02040 1.02478 0.95325 1.69891 1.37236 1.54366 1.02289 0.85585 0.81290 0.78217 0.77790 1.19446 1.22275 1.18223 1.23090 0.99354 0.96945 0.98589 1.22815 0.98039 0.98466 0.98656 1.23351 1.02919 0.93925 0.93364 0.93240 0.94551 0.87512 0.92497 0.95333 0.90312 0.92714 0.90505 0.88386 0.88216 0.88127 0.94375 0.89595 0.92985 0.92353 0.90495 0.93434 0.99469 0.79583 0.93467 0.88254 0.94228 0.92792 0.90148 0.88634 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.49 11.01 113.37 1.25 1.74 16 2 O -0.40 -9.47 10.16 -148.98 -1.51 -10.98 16 3 C 0.08 2.17 4.68 71.98 0.34 2.50 16 4 C -0.10 -2.25 2.12 -11.54 -0.02 -2.28 16 5 H 0.10 2.15 6.36 -2.39 -0.02 2.14 16 6 C -0.13 -2.01 9.01 71.98 0.65 -1.37 16 7 C 0.49 13.31 5.58 87.65 0.49 13.80 16 8 O -0.52 -17.31 6.38 -3.04 -0.02 -17.33 16 9 N -0.60 -14.74 2.96 -795.83 -2.36 -17.10 16 10 C 0.11 1.86 5.71 86.36 0.49 2.35 16 11 C -0.13 -2.84 6.08 30.67 0.19 -2.66 16 12 C -0.11 -2.73 5.88 30.62 0.18 -2.55 16 13 C -0.17 -5.42 3.85 30.53 0.12 -5.30 16 14 C 0.18 4.85 2.33 44.83 0.10 4.96 16 15 H 0.09 2.05 8.11 -2.39 -0.02 2.03 16 16 C -0.06 -2.10 0.08 -51.65 0.00 -2.11 16 17 C 0.20 8.74 4.11 86.38 0.36 9.09 16 18 N -0.75 -37.97 3.17 -343.47 -1.09 -39.06 16 19 C -0.22 -13.76 10.47 84.03 0.88 -12.88 16 20 H 0.04 3.00 8.06 -2.91 -0.02 2.97 16 21 C -0.06 -3.80 5.50 84.86 0.47 -3.33 16 22 N -0.99 -65.88 13.97 21.65 0.30 -65.57 16 23 Si 0.94 47.39 27.74 68.60 1.90 49.30 16 24 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 25 H -0.30 -14.98 7.11 99.48 0.71 -14.27 16 26 H -0.26 -11.91 6.52 99.48 0.65 -11.26 16 27 C -0.14 -4.40 6.80 31.12 0.21 -4.19 16 28 C -0.14 -4.15 7.73 31.12 0.24 -3.91 16 29 C -0.10 -2.83 5.62 31.12 0.17 -2.65 16 30 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.04 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 33 H 0.06 1.46 8.06 -2.39 -0.02 1.44 16 34 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 35 H 0.08 0.96 7.45 -2.38 -0.02 0.94 16 36 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.08 1.19 7.70 -2.39 -0.02 1.17 16 38 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.10 1.45 5.34 -2.39 -0.01 1.44 16 40 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.05 1.35 8.14 -2.38 -0.02 1.33 16 44 H 0.06 1.86 7.83 -2.39 -0.02 1.84 16 45 H 0.08 3.21 5.09 -2.39 -0.01 3.20 16 46 H 0.05 2.27 4.95 -16.33 -0.08 2.19 16 47 H -0.01 -0.63 7.33 -2.39 -0.02 -0.65 16 48 H 0.37 17.52 2.63 -92.71 -0.24 17.27 16 49 H 0.26 16.27 8.31 -92.71 -0.77 15.50 16 50 H 0.10 2.48 8.08 -2.39 -0.02 2.46 16 51 H 0.04 1.46 7.54 -2.38 -0.02 1.44 16 52 H 0.05 1.82 7.64 -2.39 -0.02 1.80 16 53 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 54 H 0.10 3.13 5.44 -48.34 -0.26 2.87 16 55 H 0.08 1.96 8.10 -2.39 -0.02 1.94 16 Total: -1.00 -75.57 395.25 3.57 -71.99 By element: Atomic # 1 Polarization: 37.28 SS G_CDS: 0.24 Total: 37.53 kcal Atomic # 6 Polarization: -14.87 SS G_CDS: 6.10 Total: -8.77 kcal Atomic # 7 Polarization: -118.59 SS G_CDS: -3.14 Total: -121.74 kcal Atomic # 8 Polarization: -26.78 SS G_CDS: -1.53 Total: -28.31 kcal Atomic # 14 Polarization: 47.39 SS G_CDS: 1.90 Total: 49.30 kcal Total: -75.57 3.57 -71.99 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001105517445.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.423 kcal (2) G-P(sol) polarization free energy of solvation -75.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds