Wall clock time and date at job start Tue Mar 31 2020 23:43:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47368 * 2 1 4 4 C 1.52997 * 109.47404 * 120.00470 * 2 1 3 5 5 O 1.42898 * 109.47319 * 174.99993 * 4 2 1 6 6 C 1.42902 * 114.00186 * 180.02562 * 5 4 2 7 7 H 1.08997 * 109.46855 * 330.00024 * 6 5 4 8 8 C 1.52996 * 109.46960 * 89.99675 * 6 5 4 9 9 C 1.50698 * 109.47139 * 209.99847 * 6 5 4 10 10 O 1.21278 * 120.00119 * 359.97438 * 9 6 5 11 11 N 1.34775 * 120.00202 * 180.02562 * 9 6 5 12 12 C 1.46501 * 120.00316 * 180.02562 * 11 9 6 13 13 C 1.53000 * 109.46899 * 179.97438 * 12 11 9 14 14 C 1.53354 * 111.23053 * 297.62689 * 13 12 11 15 15 C 1.55537 * 105.83583 * 241.97425 * 14 13 12 16 16 C 1.54676 * 104.35081 * 334.35811 * 15 14 13 17 17 C 1.54577 * 111.31405 * 177.45356 * 13 12 11 18 18 H 1.08996 * 111.92729 * 18.70939 * 17 13 12 19 19 N 1.46897 * 107.36341 * 255.62062 * 17 13 12 20 20 C 1.36943 * 125.25028 * 181.63507 * 19 17 13 21 21 H 1.07999 * 119.99451 * 0.02562 * 20 19 17 22 22 C 1.38809 * 120.00359 * 180.02562 * 20 19 17 23 23 N 1.31615 * 119.99893 * 359.97438 * 22 20 19 24 24 Si 1.86794 * 119.99966 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47441 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47394 * 119.99820 * 24 22 20 27 27 H 1.48500 * 109.46955 * 239.99914 * 24 22 20 28 28 C 1.46739 * 109.50137 * 1.65750 * 19 17 13 29 29 C 1.53865 * 111.25674 * 61.01554 * 13 12 11 30 30 H 1.09008 * 109.46970 * 299.99579 * 1 2 3 31 31 H 1.08996 * 109.47654 * 59.99341 * 1 2 3 32 32 H 1.09000 * 109.47476 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.46970 * 240.00421 * 2 1 3 34 34 H 1.08998 * 109.47430 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47271 * 300.00893 * 3 2 1 36 36 H 1.09008 * 109.46731 * 60.00275 * 3 2 1 37 37 H 1.09002 * 109.47153 * 54.99686 * 4 2 1 38 38 H 1.09001 * 109.46832 * 294.99876 * 4 2 1 39 39 H 1.09006 * 109.47596 * 60.00249 * 8 6 5 40 40 H 1.09000 * 109.47046 * 180.02562 * 8 6 5 41 41 H 1.09005 * 109.47615 * 300.00241 * 8 6 5 42 42 H 0.97000 * 119.99786 * 359.97438 * 11 9 6 43 43 H 1.08995 * 109.46515 * 299.99633 * 12 11 9 44 44 H 1.08998 * 109.47119 * 59.99676 * 12 11 9 45 45 H 1.08996 * 110.05579 * 1.98081 * 14 13 12 46 46 H 1.09000 * 110.05272 * 123.47304 * 14 13 12 47 47 H 1.09007 * 110.53803 * 215.54333 * 15 14 13 48 48 H 1.08996 * 110.34701 * 93.08051 * 15 14 13 49 49 H 1.09005 * 110.61380 * 278.64652 * 16 15 14 50 50 H 1.09000 * 110.61470 * 155.67112 * 16 15 14 51 51 H 0.97000 * 120.00643 * 180.02562 * 23 22 20 52 52 H 1.09003 * 110.04074 * 221.96611 * 28 19 17 53 53 H 1.09000 * 110.03980 * 100.50955 * 28 19 17 54 54 H 1.09002 * 110.57243 * 212.51168 * 29 13 12 55 55 H 1.08999 * 110.57738 * 335.23903 * 29 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 8 3.4641 -0.8239 1.1919 6 6 4.0450 -1.4858 2.3173 7 1 3.4250 -1.3171 3.1978 8 6 4.1337 -2.9870 2.0361 9 6 5.4272 -0.9383 2.5637 10 8 5.8714 -0.0675 1.8460 11 7 6.1702 -1.4172 3.5811 12 6 7.5137 -0.8846 3.8211 13 6 8.1356 -1.5934 5.0259 14 6 7.3253 -1.3342 6.3019 15 6 8.2868 -0.5892 7.2712 16 6 9.7002 -1.0281 6.8217 17 6 9.5812 -1.1079 5.2790 18 1 9.7809 -0.1532 4.7925 19 7 10.4871 -2.1627 4.8051 20 6 11.8538 -2.1248 4.8835 21 1 12.3459 -1.2693 5.3222 22 6 12.6065 -3.1858 4.3993 23 7 12.0068 -4.2285 3.8652 24 14 14.4707 -3.1343 4.5070 25 1 14.8947 -1.8624 5.1455 26 1 14.9515 -4.2807 5.3192 27 1 15.0479 -3.2185 3.1414 28 6 9.7018 -3.2630 4.2342 29 6 8.2681 -3.1059 4.7761 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8901 37 1 1.6054 -1.7199 1.2950 38 1 1.7517 -0.1584 2.1369 39 1 4.7536 -3.1559 1.1555 40 1 4.5763 -3.4920 2.8947 41 1 3.1339 -3.3831 1.8578 42 1 5.8151 -2.1140 4.1549 43 1 8.1337 -1.0526 2.9404 44 1 7.4501 0.1848 4.0220 45 1 6.4519 -0.7238 6.0724 46 1 7.0148 -2.2799 6.7461 47 1 8.1022 -0.8933 8.3016 48 1 8.1704 0.4894 7.1659 49 1 9.9497 -2.0040 7.2384 50 1 10.4431 -0.2849 7.1114 51 1 12.5327 -4.9701 3.5272 52 1 10.1172 -4.2206 4.5483 53 1 9.6996 -3.1950 3.1464 54 1 8.1477 -3.6599 5.7071 55 1 7.5386 -3.4375 4.0373 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001107310714.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:43:33 Heat of formation + Delta-G solvation = -97.994801 kcal Electronic energy + Delta-G solvation = -30904.949056 eV Core-core repulsion = 26940.881997 eV Total energy + Delta-G solvation = -3964.067059 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.48145 -40.50863 -38.96258 -36.34088 -36.05824 -35.42460 -33.49519 -32.63653 -31.61455 -29.17627 -28.33514 -28.00826 -27.16807 -26.11932 -25.69149 -24.46764 -22.13933 -21.55435 -21.28509 -20.98038 -19.71946 -18.94479 -18.25850 -17.97554 -16.90455 -16.81009 -16.69046 -16.27254 -16.17291 -15.80202 -15.44162 -15.13485 -14.94850 -14.60049 -14.55186 -14.40265 -14.24524 -14.00882 -13.46177 -13.43215 -13.35869 -13.21335 -13.04481 -12.90861 -12.88914 -12.84757 -12.63674 -12.46727 -12.42213 -11.98150 -11.96386 -11.86554 -11.79083 -11.62262 -11.54673 -11.47145 -11.40987 -11.32689 -11.03658 -10.93932 -10.68917 -10.43346 -10.10513 -8.82951 -7.77483 -5.17528 1.43952 1.45067 1.54831 1.56659 1.86911 2.49462 2.90808 3.33242 3.49392 3.64957 3.71145 3.72920 3.90477 3.91449 3.98339 4.04267 4.11884 4.22581 4.28507 4.38598 4.45074 4.48613 4.54174 4.59942 4.64452 4.66796 4.71381 4.72569 4.76315 4.82147 4.84843 4.87722 4.95054 5.00313 5.05667 5.06611 5.16816 5.19354 5.21899 5.24837 5.30394 5.37095 5.40866 5.42359 5.44265 5.47336 5.54116 5.62706 5.72471 5.87751 6.16472 6.31706 6.57914 7.15121 7.24013 7.85021 8.45902 9.26411 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.018488 B = 0.002358 C = 0.002247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1514.157831 B =11872.825644 C =12458.066961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.097 4.097 3 C -0.144 4.144 4 C 0.058 3.942 5 O -0.388 6.388 6 C 0.077 3.923 7 H 0.122 0.878 8 C -0.168 4.168 9 C 0.505 3.495 10 O -0.579 6.579 11 N -0.703 5.703 12 C 0.153 3.847 13 C -0.066 4.066 14 C -0.101 4.101 15 C -0.112 4.112 16 C -0.124 4.124 17 C 0.155 3.845 18 H 0.033 0.967 19 N -0.615 5.615 20 C -0.225 4.225 21 H 0.077 0.923 22 C -0.071 4.071 23 N -0.950 5.950 24 Si 0.973 3.027 25 H -0.268 1.268 26 H -0.290 1.290 27 H -0.297 1.297 28 C 0.167 3.833 29 C -0.116 4.116 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.034 0.966 35 H 0.061 0.939 36 H 0.058 0.942 37 H 0.071 0.929 38 H 0.060 0.940 39 H 0.046 0.954 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.417 0.583 43 H 0.029 0.971 44 H 0.065 0.935 45 H 0.086 0.914 46 H 0.085 0.915 47 H 0.080 0.920 48 H 0.070 0.930 49 H 0.050 0.950 50 H 0.048 0.952 51 H 0.244 0.756 52 H 0.058 0.942 53 H -0.030 1.030 54 H 0.078 0.922 55 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.707 4.462 2.517 27.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.116 4.116 3 C -0.201 4.201 4 C -0.018 4.018 5 O -0.307 6.307 6 C 0.016 3.984 7 H 0.139 0.861 8 C -0.225 4.225 9 C 0.292 3.708 10 O -0.457 6.457 11 N -0.358 5.358 12 C 0.029 3.971 13 C -0.067 4.067 14 C -0.139 4.139 15 C -0.150 4.150 16 C -0.164 4.164 17 C 0.048 3.952 18 H 0.050 0.950 19 N -0.339 5.339 20 C -0.355 4.355 21 H 0.095 0.905 22 C -0.263 4.263 23 N -0.600 5.600 24 Si 0.803 3.197 25 H -0.192 1.192 26 H -0.217 1.217 27 H -0.225 1.225 28 C 0.042 3.958 29 C -0.155 4.155 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.079 0.921 39 H 0.066 0.934 40 H 0.111 0.889 41 H 0.111 0.889 42 H 0.255 0.745 43 H 0.048 0.952 44 H 0.083 0.917 45 H 0.104 0.896 46 H 0.103 0.897 47 H 0.098 0.902 48 H 0.089 0.911 49 H 0.069 0.931 50 H 0.067 0.933 51 H 0.054 0.946 52 H 0.076 0.924 53 H -0.012 1.012 54 H 0.096 0.904 55 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -26.115 5.045 1.794 26.658 hybrid contribution 1.757 -0.472 -0.274 1.840 sum -24.358 4.573 1.520 24.830 Atomic orbital electron populations 1.21740 0.92222 1.02816 1.02847 1.21129 0.96938 0.96107 0.97400 1.21769 1.00331 0.96062 1.01982 1.22913 0.79444 1.00539 0.98857 1.88032 1.21751 1.78904 1.42027 1.21970 0.90892 0.93523 0.92030 0.86061 1.22263 1.04531 0.92293 1.03431 1.21171 0.88127 0.81729 0.79757 1.90704 1.73784 1.33164 1.48080 1.45771 1.15921 1.41838 1.32250 1.21019 0.82251 0.97438 0.96415 1.21744 0.94419 0.95409 0.95155 1.22369 0.97305 1.01811 0.92380 1.22477 0.92955 1.00192 0.99369 1.22809 0.97546 1.00106 0.95953 1.21830 0.88657 0.90841 0.93824 0.94966 1.44618 1.01481 1.17503 1.70252 1.19397 0.81948 1.02089 1.32050 0.90479 1.25570 1.02178 0.96956 1.01579 1.70137 1.33980 1.08715 1.47176 0.85067 0.80450 0.77541 0.76672 1.19205 1.21733 1.22475 1.21188 0.88960 0.93046 0.92578 1.22646 0.96865 0.94499 1.01457 0.91739 0.91617 0.91455 0.91520 0.94660 0.92030 0.92328 0.91087 0.92130 0.93446 0.88942 0.88926 0.74536 0.95210 0.91652 0.89573 0.89657 0.90176 0.91108 0.93124 0.93327 0.94640 0.92425 1.01230 0.90359 0.90273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.19 71.98 0.66 -0.67 16 2 C -0.10 -1.49 3.16 -10.80 -0.03 -1.53 16 3 C -0.14 -2.61 9.09 71.98 0.65 -1.96 16 4 C 0.06 0.89 5.13 71.98 0.37 1.26 16 5 O -0.39 -9.24 9.06 -129.94 -1.18 -10.41 16 6 C 0.08 1.47 3.14 29.85 0.09 1.57 16 7 H 0.12 1.41 7.79 -2.39 -0.02 1.39 16 8 C -0.17 -2.52 9.42 71.98 0.68 -1.85 16 9 C 0.51 14.18 7.23 87.66 0.63 14.82 16 10 O -0.58 -22.97 16.50 16.01 0.26 -22.71 16 11 N -0.70 -16.89 4.54 -463.07 -2.10 -18.99 16 12 C 0.15 4.80 4.43 86.38 0.38 5.19 16 13 C -0.07 -2.03 0.53 -51.23 -0.03 -2.05 16 14 C -0.10 -2.20 5.75 31.59 0.18 -2.02 16 15 C -0.11 -2.67 6.88 32.04 0.22 -2.45 16 16 C -0.12 -4.28 6.23 31.83 0.20 -4.08 16 17 C 0.16 6.20 3.60 46.12 0.17 6.37 16 18 H 0.03 1.38 7.92 -2.39 -0.02 1.36 16 19 N -0.61 -31.33 2.99 -667.80 -1.99 -33.32 16 20 C -0.23 -12.73 9.96 84.03 0.84 -11.89 16 21 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 22 C -0.07 -4.08 5.48 84.86 0.47 -3.62 16 23 N -0.95 -57.72 10.14 21.65 0.22 -57.50 16 24 Si 0.97 46.89 29.55 68.60 2.03 48.91 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 26 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 27 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 28 C 0.17 8.25 5.65 86.70 0.49 8.74 16 29 C -0.12 -3.93 5.77 31.25 0.18 -3.75 16 30 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 32 H 0.07 0.51 8.14 -2.39 -0.02 0.49 16 33 H 0.07 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.03 0.86 7.82 -2.39 -0.02 0.85 16 35 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 0.95 8.14 -2.38 -0.02 0.93 16 37 H 0.07 0.77 7.87 -2.39 -0.02 0.75 16 38 H 0.06 0.78 8.09 -2.39 -0.02 0.76 16 39 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 40 H 0.09 1.03 7.56 -2.39 -0.02 1.01 16 41 H 0.09 0.96 7.87 -2.38 -0.02 0.94 16 42 H 0.42 6.92 6.97 -92.71 -0.65 6.28 16 43 H 0.03 1.19 8.14 -2.39 -0.02 1.18 16 44 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.09 1.51 7.51 -2.39 -0.02 1.49 16 46 H 0.08 1.59 7.28 -2.39 -0.02 1.57 16 47 H 0.08 1.61 8.14 -2.38 -0.02 1.59 16 48 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 49 H 0.05 1.96 8.06 -2.38 -0.02 1.94 16 50 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 51 H 0.24 14.45 8.31 -92.71 -0.77 13.68 16 52 H 0.06 3.24 6.16 -2.39 -0.01 3.22 16 53 H -0.03 -1.71 8.14 -2.39 -0.02 -1.73 16 54 H 0.08 2.42 7.42 -2.39 -0.02 2.41 16 55 H 0.08 2.31 7.03 -2.39 -0.02 2.29 16 Total: -1.00 -77.93 422.07 3.58 -74.35 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.19 Total: 17.58 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: 6.15 Total: 2.08 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -3.88 Total: -109.80 kcal Atomic # 8 Polarization: -32.21 SS G_CDS: -0.91 Total: -33.12 kcal Atomic # 14 Polarization: 46.89 SS G_CDS: 2.03 Total: 48.91 kcal Total: -77.93 3.58 -74.35 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001107310714.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.643 kcal (2) G-P(sol) polarization free energy of solvation -77.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds