Wall clock time and date at job start Tue Mar 31 2020 22:00:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42906 * 113.99998 * 2 1 4 4 C 1.53004 * 109.47259 * 179.97438 * 3 2 1 5 5 C 1.53001 * 109.47167 * 184.39243 * 4 3 2 6 6 N 1.46496 * 109.45746 * 303.05627 * 5 4 3 7 7 C 1.34777 * 120.00232 * 303.00827 * 6 5 4 8 8 O 1.21281 * 120.00132 * 355.03377 * 7 6 5 9 9 C 1.50704 * 119.99989 * 175.03307 * 7 6 5 10 10 C 1.53000 * 109.47049 * 180.02562 * 9 7 6 11 11 H 1.09005 * 109.46927 * 304.99980 * 10 9 7 12 12 C 1.52999 * 109.47296 * 64.99819 * 10 9 7 13 13 C 1.53000 * 109.47061 * 184.99937 * 10 9 7 14 14 C 1.53000 * 117.49797 * 179.97438 * 13 10 9 15 15 C 1.52994 * 60.00015 * 252.51204 * 14 13 10 16 16 C 1.53042 * 109.44522 * 63.02170 * 5 4 3 17 17 C 1.53198 * 109.30802 * 181.37640 * 16 5 4 18 18 N 1.46918 * 108.77806 * 305.36849 * 17 16 5 19 19 C 1.36936 * 120.63157 * 233.62951 * 18 17 16 20 20 H 1.08005 * 119.99921 * 31.76512 * 19 18 17 21 21 C 1.38807 * 120.00199 * 211.76114 * 19 18 17 22 22 N 1.31619 * 120.00009 * 10.84552 * 21 19 18 23 23 Si 1.86803 * 119.99992 * 190.84401 * 21 19 18 24 24 H 1.48498 * 109.47311 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46866 * 120.00222 * 23 21 19 26 26 H 1.48499 * 109.47407 * 240.00241 * 23 21 19 27 27 C 1.46933 * 118.74212 * 53.60500 * 18 17 16 28 28 C 1.53035 * 109.45860 * 183.08536 * 5 4 3 29 29 H 1.08999 * 109.47326 * 300.00269 * 1 2 3 30 30 H 1.09002 * 109.46748 * 60.00118 * 1 2 3 31 31 H 1.09000 * 109.47001 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.46789 * 59.99890 * 3 2 1 33 33 H 1.09003 * 109.47263 * 299.99882 * 3 2 1 34 34 H 1.09005 * 109.46894 * 64.39036 * 4 3 2 35 35 H 1.08998 * 109.47053 * 304.39414 * 4 3 2 36 36 H 0.97002 * 120.00008 * 123.01019 * 6 5 4 37 37 H 1.09001 * 109.47255 * 60.00000 * 9 7 6 38 38 H 1.09002 * 109.47068 * 300.00381 * 9 7 6 39 39 H 1.09005 * 109.47001 * 60.00207 * 12 10 9 40 40 H 1.09002 * 109.46934 * 180.02562 * 12 10 9 41 41 H 1.09001 * 109.46976 * 299.99945 * 12 10 9 42 42 H 1.08996 * 115.55969 * 325.68947 * 13 10 9 43 43 H 1.09002 * 117.49341 * 145.02121 * 14 13 10 44 44 H 1.08993 * 117.50044 * 0.02562 * 14 13 10 45 45 H 1.08995 * 117.49985 * 107.49654 * 15 14 13 46 46 H 1.09006 * 117.49839 * 252.51019 * 15 14 13 47 47 H 1.08990 * 109.49773 * 301.32994 * 16 5 4 48 48 H 1.08997 * 109.49655 * 61.43140 * 16 5 4 49 49 H 1.08999 * 109.58556 * 185.57584 * 17 16 5 50 50 H 1.09003 * 109.58230 * 65.15206 * 17 16 5 51 51 H 0.97000 * 119.99879 * 179.97438 * 22 21 19 52 52 H 1.08998 * 109.58622 * 186.60215 * 27 18 17 53 53 H 1.09008 * 109.69951 * 66.24843 * 27 18 17 54 54 H 1.09000 * 109.50033 * 298.57982 * 28 5 4 55 55 H 1.08996 * 109.50170 * 58.67619 * 28 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 6 4.1574 2.5783 0.1111 6 7 3.6749 3.4166 -0.9891 7 6 3.8577 3.0245 -2.2655 8 8 4.4998 2.0242 -2.5065 9 6 3.2643 3.8289 -3.3933 10 6 3.6169 3.1715 -4.7291 11 1 4.6981 3.0531 -4.8016 12 6 2.9467 1.7988 -4.8147 13 6 3.1222 4.0531 -5.8776 14 6 3.3812 3.5655 -7.3045 15 6 4.1778 4.7446 -6.7426 16 6 3.7581 3.2100 1.4467 17 6 4.3539 4.6183 1.5391 18 7 5.8044 4.5334 1.3215 19 6 6.6787 5.0677 2.2299 20 1 6.4228 5.0867 3.2790 21 6 7.8938 5.5849 1.8024 22 7 8.1195 5.7590 0.5174 23 14 9.2089 6.0339 3.0509 24 1 8.7115 5.7442 4.4197 25 1 10.4327 5.2342 2.7899 26 1 9.5282 7.4795 2.9354 27 6 6.2992 3.8637 0.1108 28 6 5.6815 2.4639 0.0344 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6886 1.8464 0.8899 33 1 1.6886 1.8465 -0.8900 34 1 3.8630 0.7131 -0.9259 35 1 3.8515 0.5775 0.8489 36 1 3.2237 4.2540 -0.7989 37 1 3.6672 4.8414 -3.3686 38 1 2.1806 3.8663 -3.2819 39 1 1.8655 1.9172 -4.7422 40 1 3.1983 1.3303 -5.7662 41 1 3.2992 1.1708 -3.9965 42 1 2.1934 4.5919 -5.6904 43 1 2.6225 3.7833 -8.0562 44 1 3.9036 2.6165 -7.4251 45 1 5.2248 4.5716 -6.4936 46 1 3.9433 5.7382 -7.1247 47 1 2.6717 3.2697 1.5104 48 1 4.1382 2.5997 2.2659 49 1 4.1563 5.0345 2.5270 50 1 3.9066 5.2551 0.7759 51 1 8.9685 6.1208 0.2188 52 1 7.3851 3.7820 0.1564 53 1 6.0125 4.4382 -0.7701 54 1 6.0435 1.8606 0.8669 55 1 5.9641 1.9926 -0.9069 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151412747.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:00:45 Heat of formation + Delta-G solvation = -67.249853 kcal Electronic energy + Delta-G solvation = -31965.894281 eV Core-core repulsion = 28003.160422 eV Total energy + Delta-G solvation = -3962.733858 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -41.65868 -39.57634 -38.63976 -38.33091 -36.19918 -34.08940 -33.59967 -32.83715 -31.76105 -30.41019 -28.62061 -27.58278 -26.38755 -24.80552 -24.57341 -23.64001 -23.08804 -22.15675 -21.57458 -20.58112 -20.05232 -18.79236 -17.98574 -17.44468 -16.99826 -16.82965 -16.68637 -16.13142 -16.09601 -15.77432 -15.62439 -15.38031 -15.18627 -14.92101 -14.55150 -14.49355 -14.13793 -13.98935 -13.94384 -13.72760 -13.17749 -13.03859 -12.98069 -12.73036 -12.70448 -12.62540 -12.41526 -12.28285 -12.19960 -12.10632 -12.05183 -11.98956 -11.91443 -11.78855 -11.66862 -11.29214 -11.22675 -11.09880 -10.76363 -10.56349 -10.54562 -10.23432 -9.83019 -8.58769 -7.85105 -5.36133 1.44764 1.47164 1.56730 1.85573 2.35367 2.50887 2.84150 2.96097 3.31231 3.65920 3.73085 3.77927 3.87758 3.99929 4.06575 4.13524 4.15961 4.21141 4.29964 4.39559 4.42429 4.47515 4.54873 4.56279 4.56700 4.61283 4.68019 4.71875 4.76280 4.78726 4.82686 4.85752 4.92496 4.95855 5.02403 5.06730 5.08302 5.09675 5.15128 5.20763 5.28697 5.30769 5.31762 5.37436 5.50885 5.52345 5.54090 5.65540 5.74202 5.83593 6.28670 6.42647 6.78486 7.17603 7.49255 7.88478 8.40733 9.19929 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.008746 B = 0.003944 C = 0.002885 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.630890 B = 7097.809982 C = 9704.399801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.420 6.420 3 C 0.075 3.925 4 C -0.119 4.119 5 C 0.204 3.796 6 N -0.710 5.710 7 C 0.510 3.490 8 O -0.566 6.566 9 C -0.129 4.129 10 C -0.040 4.040 11 H 0.047 0.953 12 C -0.141 4.141 13 C -0.146 4.146 14 C -0.174 4.174 15 C -0.190 4.190 16 C -0.127 4.127 17 C 0.142 3.858 18 N -0.607 5.607 19 C -0.260 4.260 20 H 0.067 0.933 21 C -0.049 4.049 22 N -0.935 5.935 23 Si 0.964 3.036 24 H -0.264 1.264 25 H -0.296 1.296 26 H -0.291 1.291 27 C 0.198 3.802 28 C -0.138 4.138 29 H 0.052 0.948 30 H 0.047 0.953 31 H 0.094 0.906 32 H 0.065 0.935 33 H 0.050 0.950 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.407 0.593 37 H 0.097 0.903 38 H 0.119 0.881 39 H 0.062 0.938 40 H 0.052 0.948 41 H 0.049 0.951 42 H 0.121 0.879 43 H 0.108 0.892 44 H 0.086 0.914 45 H 0.079 0.921 46 H 0.104 0.896 47 H 0.097 0.903 48 H 0.069 0.931 49 H 0.059 0.941 50 H 0.027 0.973 51 H 0.247 0.753 52 H 0.038 0.962 53 H -0.003 1.003 54 H 0.048 0.952 55 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.991 -5.005 -8.684 21.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.340 6.340 3 C -0.001 4.001 4 C -0.158 4.158 5 C 0.117 3.883 6 N -0.363 5.363 7 C 0.298 3.702 8 O -0.446 6.446 9 C -0.168 4.168 10 C -0.059 4.059 11 H 0.066 0.934 12 C -0.198 4.198 13 C -0.164 4.164 14 C -0.211 4.211 15 C -0.227 4.227 16 C -0.166 4.166 17 C 0.017 3.983 18 N -0.331 5.331 19 C -0.391 4.391 20 H 0.085 0.915 21 C -0.244 4.244 22 N -0.581 5.581 23 Si 0.792 3.208 24 H -0.188 1.188 25 H -0.223 1.223 26 H -0.218 1.218 27 C 0.072 3.928 28 C -0.178 4.178 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.113 0.887 32 H 0.083 0.917 33 H 0.068 0.932 34 H 0.084 0.916 35 H 0.087 0.913 36 H 0.244 0.756 37 H 0.115 0.885 38 H 0.137 0.863 39 H 0.081 0.919 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.139 0.861 43 H 0.127 0.873 44 H 0.105 0.895 45 H 0.097 0.903 46 H 0.123 0.877 47 H 0.115 0.885 48 H 0.087 0.913 49 H 0.077 0.923 50 H 0.045 0.955 51 H 0.056 0.944 52 H 0.056 0.944 53 H 0.015 0.985 54 H 0.067 0.933 55 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.317 -5.814 -8.889 21.173 hybrid contribution 1.237 0.914 0.534 1.628 sum -17.080 -4.900 -8.355 19.635 Atomic orbital electron populations 1.22910 0.79545 1.03681 1.00850 1.87844 1.21520 1.29013 1.95588 1.22464 0.92735 0.84161 1.00722 1.21775 0.94366 0.96522 1.03120 1.19915 0.92230 0.89315 0.86808 1.46080 1.60028 1.25023 1.05132 1.21111 0.79415 0.85343 0.84335 1.90599 1.41091 1.28493 1.84381 1.21736 1.03490 0.99797 0.91804 1.20349 0.99147 0.94682 0.91756 0.93446 1.21813 1.00290 0.96072 1.01610 1.22331 1.00641 1.02279 0.91154 1.22971 1.03479 0.98281 0.96332 1.23067 0.96831 0.97899 1.04896 1.22281 1.01338 0.97836 0.95148 1.21067 0.83670 0.94385 0.99170 1.44233 1.01133 1.64610 1.23135 1.19538 0.98592 1.31672 0.89253 0.91524 1.25881 1.02006 0.99190 0.97333 1.70159 1.23980 1.49332 1.14610 0.85255 0.79109 0.76989 0.79398 1.18838 1.22273 1.21785 1.20271 0.96820 0.88638 0.87094 1.22366 0.95937 0.98906 1.00543 0.92904 0.93394 0.88712 0.91675 0.93196 0.91567 0.91292 0.75636 0.88459 0.86256 0.91913 0.92897 0.93160 0.86072 0.87327 0.89503 0.90265 0.87735 0.88478 0.91254 0.92256 0.95525 0.94402 0.94380 0.98485 0.93281 0.92411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.42 -10.79 10.70 -148.98 -1.59 -12.38 16 3 C 0.08 1.81 5.50 71.98 0.40 2.21 16 4 C -0.12 -3.56 4.32 30.60 0.13 -3.43 16 5 C 0.20 6.44 0.35 3.63 0.00 6.44 16 6 N -0.71 -19.91 3.36 -422.81 -1.42 -21.33 16 7 C 0.51 15.01 6.72 87.66 0.59 15.60 16 8 O -0.57 -20.75 10.24 -3.03 -0.03 -20.78 16 9 C -0.13 -2.79 5.16 29.85 0.15 -2.63 16 10 C -0.04 -0.92 2.19 -10.79 -0.02 -0.94 16 11 H 0.05 1.38 7.71 -2.38 -0.02 1.36 16 12 C -0.14 -3.20 8.77 71.98 0.63 -2.57 16 13 C -0.15 -2.62 5.15 -10.79 -0.06 -2.68 16 14 C -0.17 -2.92 9.74 30.59 0.30 -2.62 16 15 C -0.19 -3.54 10.18 30.59 0.31 -3.23 16 16 C -0.13 -3.72 4.72 30.67 0.14 -3.58 16 17 C 0.14 5.24 6.24 86.37 0.54 5.78 16 18 N -0.61 -29.51 2.98 -699.08 -2.09 -31.60 16 19 C -0.26 -14.10 9.57 84.03 0.80 -13.29 16 20 H 0.07 3.50 7.85 -2.91 -0.02 3.48 16 21 C -0.05 -2.73 5.04 84.86 0.43 -2.30 16 22 N -0.93 -55.91 11.09 21.65 0.24 -55.67 16 23 Si 0.96 45.17 29.57 68.60 2.03 47.19 16 24 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 25 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 26 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 27 C 0.20 9.79 4.99 86.36 0.43 10.22 16 28 C -0.14 -5.68 4.71 30.67 0.14 -5.53 16 29 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.07 1.34 6.27 -2.39 -0.01 1.33 16 33 H 0.05 1.14 7.46 -2.39 -0.02 1.12 16 34 H 0.07 2.33 6.22 -2.38 -0.01 2.32 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.41 9.72 7.18 -92.71 -0.67 9.06 16 37 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 38 H 0.12 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.05 1.14 7.29 -2.39 -0.02 1.12 16 41 H 0.05 1.44 5.95 -2.39 -0.01 1.43 16 42 H 0.12 1.74 8.11 -2.39 -0.02 1.72 16 43 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.09 1.57 7.61 -2.39 -0.02 1.56 16 45 H 0.08 1.72 8.05 -2.39 -0.02 1.70 16 46 H 0.10 1.66 8.14 -2.38 -0.02 1.64 16 47 H 0.10 2.12 6.35 -2.39 -0.02 2.10 16 48 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 49 H 0.06 2.14 7.93 -2.39 -0.02 2.12 16 50 H 0.03 0.93 6.88 -2.39 -0.02 0.91 16 51 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 52 H 0.04 2.22 6.14 -2.39 -0.01 2.20 16 53 H 0.00 -0.15 7.74 -2.38 -0.02 -0.17 16 54 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 55 H 0.06 2.55 6.26 -2.39 -0.01 2.53 16 Total: -1.00 -69.50 412.50 3.51 -66.00 By element: Atomic # 1 Polarization: 29.25 SS G_CDS: 0.19 Total: 29.45 kcal Atomic # 6 Polarization: -7.05 SS G_CDS: 6.17 Total: -0.88 kcal Atomic # 7 Polarization: -105.34 SS G_CDS: -3.26 Total: -108.60 kcal Atomic # 8 Polarization: -31.53 SS G_CDS: -1.63 Total: -33.16 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.19 kcal Total: -69.50 3.51 -66.00 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151412747.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.254 kcal (2) G-P(sol) polarization free energy of solvation -69.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds