Wall clock time and date at job start Tue Mar 31 2020 23:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53008 * 109.47232 * 2 1 4 4 C 1.53000 * 109.47740 * 119.99717 * 2 1 3 5 5 C 1.53006 * 109.46685 * 64.99610 * 4 2 1 6 6 O 1.42898 * 109.46808 * 180.02562 * 5 4 2 7 7 C 1.42904 * 114.00008 * 180.02562 * 6 5 4 8 8 H 1.09006 * 109.46693 * 329.99607 * 7 6 5 9 9 C 1.52994 * 109.47083 * 90.00071 * 7 6 5 10 10 C 1.50701 * 109.46863 * 210.00056 * 7 6 5 11 11 O 1.21281 * 120.00551 * 354.99951 * 10 7 6 12 12 N 1.34783 * 119.99609 * 174.99795 * 10 7 6 13 13 C 1.46501 * 119.99884 * 180.02562 * 12 10 7 14 14 C 1.52999 * 109.46926 * 179.97438 * 13 12 10 15 15 C 1.50702 * 109.47031 * 179.97438 * 14 13 12 16 16 C 1.29448 * 117.69487 * 95.00283 * 15 14 13 17 17 C 1.50322 * 123.65184 * 180.85851 * 16 15 14 18 18 N 1.47005 * 109.16458 * 349.02426 * 17 16 15 19 19 C 1.36946 * 121.37235 * 222.96838 * 18 17 16 20 20 H 1.07998 * 119.99910 * 155.97437 * 19 18 17 21 21 C 1.38811 * 119.99879 * 335.97052 * 19 18 17 22 22 N 1.31617 * 120.00003 * 344.51568 * 21 19 18 23 23 Si 1.86797 * 119.99733 * 164.51910 * 21 19 18 24 24 H 1.48505 * 109.47131 * 89.99881 * 23 21 19 25 25 H 1.48500 * 109.47141 * 209.99792 * 23 21 19 26 26 H 1.48501 * 109.47227 * 329.99893 * 23 21 19 27 27 C 1.47339 * 117.25394 * 42.94873 * 18 17 16 28 28 C 1.49970 * 117.69085 * 274.74166 * 15 14 13 29 29 H 1.09000 * 109.46993 * 60.00442 * 1 2 3 30 30 H 1.08999 * 109.46900 * 180.02562 * 1 2 3 31 31 H 1.09007 * 109.46805 * 300.00212 * 1 2 3 32 32 H 1.09002 * 109.47491 * 239.99806 * 2 1 3 33 33 H 1.08997 * 109.46998 * 180.02562 * 3 2 1 34 34 H 1.09008 * 109.46686 * 299.99944 * 3 2 1 35 35 H 1.08993 * 109.47321 * 59.99578 * 3 2 1 36 36 H 1.08999 * 109.46620 * 305.00627 * 4 2 1 37 37 H 1.08994 * 109.47530 * 184.99883 * 4 2 1 38 38 H 1.08999 * 109.46762 * 60.01103 * 5 4 2 39 39 H 1.08994 * 109.47359 * 300.00377 * 5 4 2 40 40 H 1.09001 * 109.46821 * 180.02562 * 9 7 6 41 41 H 1.08996 * 109.47194 * 60.00242 * 9 7 6 42 42 H 1.09003 * 109.46990 * 300.00020 * 9 7 6 43 43 H 0.97000 * 119.99947 * 359.97438 * 12 10 7 44 44 H 1.08995 * 109.47138 * 300.00258 * 13 12 10 45 45 H 1.09000 * 109.46986 * 59.99726 * 13 12 10 46 46 H 1.08995 * 109.47683 * 300.00243 * 14 13 12 47 47 H 1.09003 * 109.46532 * 60.00126 * 14 13 12 48 48 H 1.07995 * 118.17343 * 0.88076 * 16 15 14 49 49 H 1.08997 * 109.52358 * 108.92886 * 17 16 15 50 50 H 1.08998 * 109.52211 * 229.11972 * 17 16 15 51 51 H 0.97008 * 119.99754 * 179.97438 * 22 21 19 52 52 H 1.09001 * 109.78073 * 57.80686 * 27 18 17 53 53 H 1.08992 * 109.77982 * 178.61905 * 27 18 17 54 54 H 1.08999 * 109.32055 * 281.28946 * 28 15 14 55 55 H 1.09006 * 109.31908 * 40.72339 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6353 -2.1954 1.1880 6 8 2.1112 -2.8689 2.3550 7 6 1.7853 -4.2596 2.3971 8 1 0.8482 -4.4293 1.8667 9 6 2.9019 -5.0655 1.7307 10 6 1.6370 -4.6975 3.8315 11 8 1.8832 -3.9220 4.7309 12 7 1.2307 -5.9510 4.1148 13 6 1.0860 -6.3766 5.5091 14 6 0.6153 -7.8318 5.5519 15 6 0.4670 -8.2698 6.9862 16 6 -0.7077 -8.1839 7.5232 17 6 -1.0028 -8.5654 8.9469 18 7 0.1571 -9.2741 9.5069 19 6 0.0035 -10.3979 10.2742 20 1 0.8098 -11.1122 10.3532 21 6 -1.1883 -10.6190 10.9506 22 7 -2.0465 -9.6340 11.1109 23 14 -1.5741 -12.3144 11.6334 24 1 -1.0554 -12.4189 13.0210 25 1 -3.0443 -12.5236 11.6374 26 1 -0.9292 -13.3483 10.7847 27 6 1.4916 -8.7257 9.2081 28 6 1.6896 -8.7801 7.6890 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8900 33 1 3.1300 1.4425 -0.0005 34 1 1.6766 1.9564 -0.8901 35 1 1.6767 1.9564 0.8899 36 1 1.6054 -0.2616 2.1369 37 1 3.1264 -0.6442 1.2951 38 1 2.0700 -2.6549 0.3003 39 1 0.5490 -2.2723 1.1421 40 1 2.6530 -6.1263 1.7624 41 1 3.8388 -4.8958 2.2611 42 1 3.0092 -4.7487 0.6932 43 1 1.0335 -6.5711 3.3954 44 1 2.0466 -6.2900 6.0170 45 1 0.3528 -5.7430 6.0081 46 1 -0.3453 -7.9180 5.0441 47 1 1.3483 -8.4655 5.0527 48 1 -1.5211 -7.8180 6.9143 49 1 -1.1977 -7.6667 9.5320 50 1 -1.8763 -9.2167 8.9759 51 1 -2.8796 -9.7886 11.5832 52 1 1.5526 -7.6942 9.5551 53 1 2.2560 -9.3270 9.7001 54 1 1.8784 -9.8091 7.3830 55 1 2.5460 -8.1631 7.4167 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161982453.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:49:15 Heat of formation + Delta-G solvation = -91.893608 kcal Electronic energy + Delta-G solvation = -28854.142639 eV Core-core repulsion = 24890.340148 eV Total energy + Delta-G solvation = -3963.802491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 338.236 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.07422 -39.55710 -39.01372 -37.14932 -36.68316 -35.16692 -33.39740 -32.54777 -31.46566 -30.25104 -29.78525 -28.02989 -27.22595 -25.53840 -24.57482 -24.06722 -23.61728 -22.47611 -21.53017 -20.83238 -19.46036 -18.34083 -18.08330 -17.56630 -17.02439 -17.01625 -16.59646 -16.41963 -15.82182 -15.69132 -15.58713 -15.31720 -15.10184 -14.85479 -14.70149 -14.58053 -14.31708 -13.99449 -13.80890 -13.44222 -13.38799 -13.25677 -13.19468 -13.02323 -12.93338 -12.84028 -12.78446 -12.57162 -12.43139 -12.37443 -12.19094 -12.15022 -11.88827 -11.73783 -11.67315 -11.54222 -11.51162 -11.24092 -10.95471 -10.68210 -10.46372 -10.14704 -9.48592 -8.75170 -7.88144 -5.30390 1.39915 1.46793 1.47800 1.55052 1.57949 1.89575 2.51210 2.87445 3.28779 3.62488 3.69275 3.89066 3.90701 3.96695 3.98319 4.04324 4.09401 4.12607 4.14922 4.29987 4.30947 4.43918 4.53751 4.55402 4.58555 4.68634 4.68744 4.77106 4.80065 4.82996 4.86598 4.91177 4.94079 4.97675 5.01356 5.07996 5.08998 5.11162 5.17840 5.21672 5.23739 5.30870 5.38131 5.41992 5.43697 5.49722 5.50298 5.60685 5.88108 6.12690 6.28826 6.33449 6.56429 7.13017 7.22633 7.83112 8.38173 9.20509 Molecular weight = 338.24amu Principal moments of inertia in cm(-1) A = 0.029165 B = 0.001523 C = 0.001493 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.822760 B =18377.224943 C =18745.941663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.088 4.088 3 C -0.148 4.148 4 C -0.114 4.114 5 C 0.055 3.945 6 O -0.393 6.393 7 C 0.073 3.927 8 H 0.117 0.883 9 C -0.164 4.164 10 C 0.504 3.496 11 O -0.579 6.579 12 N -0.709 5.709 13 C 0.132 3.868 14 C -0.077 4.077 15 C -0.121 4.121 16 C -0.174 4.174 17 C 0.206 3.794 18 N -0.615 5.615 19 C -0.259 4.259 20 H 0.071 0.929 21 C -0.056 4.056 22 N -0.942 5.942 23 Si 0.972 3.028 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.269 1.269 27 C 0.134 3.866 28 C -0.087 4.087 29 H 0.064 0.936 30 H 0.059 0.941 31 H 0.047 0.953 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.049 0.951 36 H 0.053 0.947 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.060 0.940 40 H 0.096 0.904 41 H 0.051 0.949 42 H 0.088 0.912 43 H 0.419 0.581 44 H 0.057 0.943 45 H 0.046 0.954 46 H 0.086 0.914 47 H 0.096 0.904 48 H 0.114 0.886 49 H 0.000 1.000 50 H 0.056 0.944 51 H 0.249 0.751 52 H 0.016 0.984 53 H 0.059 0.941 54 H 0.071 0.929 55 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.591 13.236 -30.537 34.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.107 4.107 3 C -0.206 4.206 4 C -0.152 4.152 5 C -0.021 4.021 6 O -0.312 6.312 7 C 0.013 3.987 8 H 0.134 0.866 9 C -0.222 4.222 10 C 0.291 3.709 11 O -0.458 6.458 12 N -0.363 5.363 13 C 0.009 3.991 14 C -0.114 4.114 15 C -0.122 4.122 16 C -0.194 4.194 17 C 0.081 3.919 18 N -0.339 5.339 19 C -0.389 4.389 20 H 0.089 0.911 21 C -0.251 4.251 22 N -0.589 5.589 23 Si 0.799 3.201 24 H -0.212 1.212 25 H -0.219 1.219 26 H -0.194 1.194 27 C 0.009 3.991 28 C -0.125 4.125 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.102 0.898 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.072 0.928 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.070 0.930 42 H 0.107 0.893 43 H 0.257 0.743 44 H 0.075 0.925 45 H 0.065 0.935 46 H 0.105 0.895 47 H 0.115 0.885 48 H 0.132 0.868 49 H 0.018 0.982 50 H 0.074 0.926 51 H 0.058 0.942 52 H 0.034 0.966 53 H 0.077 0.923 54 H 0.089 0.911 55 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 7.736 13.867 -29.668 33.650 hybrid contribution -0.817 -0.862 0.880 1.478 sum 6.920 13.004 -28.788 32.338 Atomic orbital electron populations 1.21948 0.94917 1.02163 1.02012 1.21028 0.96116 0.96411 0.97138 1.21842 1.01168 0.95509 1.02057 1.21583 1.01542 0.93250 0.98791 1.22878 0.98734 0.93101 0.87364 1.88022 1.78477 1.20568 1.44161 1.22028 1.01644 0.83517 0.91560 0.86572 1.22235 0.97356 1.00856 1.01749 1.21163 0.76021 0.81881 0.91848 1.90722 1.50858 1.54239 1.49952 1.45800 1.68295 1.13067 1.09180 1.21172 1.00743 0.95117 0.82114 1.20799 1.03422 0.93796 0.93396 1.20597 0.94858 1.00690 0.96090 1.22822 0.97931 1.01150 0.97451 1.19352 0.90488 0.93720 0.88333 1.44422 1.01408 1.29866 1.58181 1.19552 1.00758 0.97344 1.21270 0.91079 1.25801 0.98902 1.01098 0.99281 1.70206 1.11194 1.31500 1.45976 0.85210 0.76689 0.79993 0.78162 1.21180 1.21864 1.19358 1.21197 0.87235 0.95942 0.94754 1.20747 0.95764 1.00876 0.95151 0.91692 0.92151 0.93377 0.89846 0.92483 0.91609 0.93224 0.92812 0.91618 0.91005 0.92201 0.88515 0.92975 0.89270 0.74268 0.92507 0.93534 0.89537 0.88546 0.86839 0.98184 0.92620 0.94158 0.96613 0.92254 0.91106 0.89727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.95 71.98 0.64 -0.77 16 2 C -0.09 -0.85 2.92 -10.79 -0.03 -0.88 16 3 C -0.15 -1.40 9.19 71.98 0.66 -0.73 16 4 C -0.11 -1.60 5.05 30.60 0.15 -1.44 16 5 C 0.05 0.74 5.50 71.98 0.40 1.14 16 6 O -0.39 -8.44 9.53 -129.99 -1.24 -9.68 16 7 C 0.07 1.16 3.13 29.85 0.09 1.25 16 8 H 0.12 1.06 7.79 -2.38 -0.02 1.04 16 9 C -0.16 -1.66 9.48 71.98 0.68 -0.98 16 10 C 0.50 12.03 7.18 87.66 0.63 12.66 16 11 O -0.58 -20.90 16.51 15.96 0.26 -20.64 16 12 N -0.71 -12.75 5.52 -463.06 -2.55 -15.31 16 13 C 0.13 3.15 5.66 86.38 0.49 3.63 16 14 C -0.08 -1.65 5.32 29.85 0.16 -1.49 16 15 C -0.12 -3.93 5.11 -15.13 -0.08 -4.00 16 16 C -0.17 -6.72 9.47 27.11 0.26 -6.47 16 17 C 0.21 10.47 5.23 85.42 0.45 10.92 16 18 N -0.61 -32.13 3.01 -703.02 -2.11 -34.24 16 19 C -0.26 -14.64 9.71 84.03 0.82 -13.83 16 20 H 0.07 3.86 7.88 -2.91 -0.02 3.84 16 21 C -0.06 -3.21 5.01 84.86 0.43 -2.79 16 22 N -0.94 -57.16 11.08 21.65 0.24 -56.92 16 23 Si 0.97 45.54 29.58 68.60 2.03 47.57 16 24 H -0.29 -13.15 7.11 99.48 0.71 -12.45 16 25 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 26 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 27 C 0.13 5.73 6.59 86.32 0.57 6.30 16 28 C -0.09 -2.88 5.95 29.72 0.18 -2.71 16 29 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.50 6.56 -2.39 -0.02 0.49 16 31 H 0.05 0.54 8.14 -2.38 -0.02 0.52 16 32 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 34 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 35 H 0.05 0.53 8.14 -2.39 -0.02 0.52 16 36 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.07 0.63 7.87 -2.39 -0.02 0.61 16 39 H 0.06 0.70 6.51 -2.39 -0.02 0.68 16 40 H 0.10 0.50 7.93 -2.39 -0.02 0.48 16 41 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.09 0.57 7.87 -2.39 -0.02 0.55 16 43 H 0.42 3.96 8.26 -92.71 -0.77 3.20 16 44 H 0.06 1.53 8.11 -2.39 -0.02 1.51 16 45 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.09 1.62 7.78 -2.39 -0.02 1.60 16 47 H 0.10 1.63 8.11 -2.39 -0.02 1.61 16 48 H 0.11 3.80 7.73 -2.91 -0.02 3.78 16 49 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 50 H 0.06 3.15 6.41 -2.39 -0.02 3.14 16 51 H 0.25 14.62 8.31 -92.70 -0.77 13.85 16 52 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 53 H 0.06 2.44 7.96 -2.39 -0.02 2.42 16 54 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 55 H 0.08 2.32 8.10 -2.38 -0.02 2.31 16 Total: -1.00 -78.20 435.00 3.19 -75.01 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: 0.07 Total: 14.39 kcal Atomic # 6 Polarization: -6.68 SS G_CDS: 6.49 Total: -0.19 kcal Atomic # 7 Polarization: -102.04 SS G_CDS: -4.43 Total: -106.47 kcal Atomic # 8 Polarization: -29.34 SS G_CDS: -0.97 Total: -30.32 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -78.20 3.19 -75.01 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161982453.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.883 kcal (2) G-P(sol) polarization free energy of solvation -78.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds